ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome... 119 1e-23
2gb|AY090535.1| Deschampsia antarctica unknown cold induced prote... 119 1e-23
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AK067043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
5gb|AY111310.1| Zea mays CL13668_1 mRNA sequence 94 7e-16
6gb|BT019309.1| Zea mays clone Contig982.F mRNA sequence 50 0.010
7ref|NM_191137.1| Oryza sativa (japonica cultivar-group), predic... 44 0.60
8gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, com... 44 0.60
9ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone ma... 44 0.60
10gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.60
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
12dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
13dbj|AK121118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
14emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12 44 0.60
15gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA... 44 0.60
16ref|XM_529681.1| PREDICTED: Pan troglodytes LOC453334 (LOC453334... 42 2.4
17ref|XM_517703.1| PREDICTED: Pan troglodytes similar to KIAA0888 ... 42 2.4
18ref|XM_473655.1| Oryza sativa (japonica cultivar-group), predic... 42 2.4
19gb|BT019268.1| Zea mays clone Contig941.F mRNA sequence 42 2.4
20ref|XM_544374.2| PREDICTED: Canis familiaris similar to CG14692-... 42 2.4
21gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 42 2.4
22emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 42 2.4
23emb|CR936791.1| Homo sapiens mRNA; cDNA DKFZp781C2356 (from clon... 42 2.4
24gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, comp... 42 2.4
25dbj|AK057210.1| Homo sapiens cDNA FLJ32648 fis, clone SYNOV20014... 42 2.4
26gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, com... 42 2.4
27gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complet... 42 2.4
28ref|XM_943531.1| PREDICTED: Homo sapiens KIAA0888 protein, trans... 42 2.4
29ref|XM_032571.7| PREDICTED: Homo sapiens KIAA0888 protein, trans... 42 2.4
30gb|AC016594.7| Homo sapiens chromosome 5 clone CTD-2010O3, compl... 42 2.4
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
32gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 2.4
33emb|BX647536.1|HSM807682 Homo sapiens mRNA; cDNA DKFZp686E0692 (... 42 2.4
34emb|BX640902.1|HSM807037 Homo sapiens mRNA; cDNA DKFZp686O1754 (... 42 2.4
35gb|AC002126.1|AC002126 Homo sapiens DNA from chromosome 19-cosmi... 42 2.4
36dbj|AK073181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
37dbj|AB020695.1| Homo sapiens mRNA for KIAA0888 protein, partial cds 42 2.4
38ref|XM_510007.1| PREDICTED: Pan troglodytes similar to farnesylt... 40 9.4
39gb|AC113720.6| Rattus norvegicus 1 BAC CH230-117B1 (Children's H... 40 9.4
40ref|NM_002028.3| Homo sapiens farnesyltransferase, CAAX box, bet... 40 9.4
41ref|NM_178548.2| Homo sapiens transcription factor AP-2 epsilon ... 40 9.4
42gb|AY225134.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 9.4
43gb|AY326454.1| Homo sapiens transcription factor AP-2 epsilon mR... 40 9.4
44ref|XM_547686.2| PREDICTED: Canis familiaris similar to Nucleopo... 40 9.4
45emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chro... 40 9.4
46emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chr... 40 9.4
47emb|AL157951.5| Human DNA sequence from clone RP5-983H21 on chro... 40 9.4
48emb|BX248269.1|CNSLT1I8S human full-length cDNA clone CS0DC015YK... 40 9.4
49emb|CR618315.1| full-length cDNA clone CS0DE007YE21 of Placenta ... 40 9.4
50dbj|AK093298.1| Homo sapiens cDNA FLJ35979 fis, clone TESTI20135... 40 9.4
51gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 9.4
52emb|BX511237.5| Zebrafish DNA sequence from clone CH211-251M3 in... 40 9.4
53gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chrom... 40 9.4
54gb|AC134527.5| Mus musculus BAC clone RP24-502D8 from chromosome... 40 9.4
55dbj|AK087159.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 9.4
56ref|NM_152982.2| Danio rerio myosin, heavy polypeptide 2, fast m... 40 9.4
57emb|CR338837.1| Gallus gallus finished cDNA, clone ChEST850i12 40 9.4
58gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete ... 40 9.4
59emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on ch... 40 9.4
60gb|BC071279.1| Danio rerio myosin, heavy polypeptide 2, fast mus... 40 9.4
61gb|BC041175.1| Homo sapiens transcription factor AP-2 epsilon (a... 40 9.4
62gb|BC020232.1| Homo sapiens farnesyltransferase, CAAX box, beta,... 40 9.4
63emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-8... 40 9.4
64gb|BC078926.1| Rattus norvegicus similar to 9230105E10Rik protei... 40 9.4
65emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in l... 40 9.4
66ref|NM_001014023.1| Rattus norvegicus similar to 9230105E10Rik p... 40 9.4
67gb|BC013574.1| Homo sapiens cDNA clone IMAGE:3898137, containing... 40 9.4
68gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcript... 40 9.4
69gb|L10414.1|HUMFTB Human farnesyltransferase beta-subunit mRNA, ... 40 9.4
70emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chr... 40 9.4
71gb|L00635.1|HUMFPTB Human farnesyl-protein transferase beta-subu... 40 9.4
72dbj|AB037179.1| Candida tropicalis CtPP1 gene for protein-tyrosi... 40 9.4 
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10,
              complete sequence
          Length = 171101

 Score =  119 bits (60), Expect = 1e-23
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                          
Query: 376    cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
              ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 129064 cttcttgcgcagatcctccaggcacctcacctccgacatgcacgcgaacgactgggactt 129005

                                      
Query: 436    gccgtcgtagtacttggacaaccc 459
               || ||||||||| ||||||||||
Sbjct: 129004 cccctcgtagtacctggacaaccc 128981
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>gb|AY090535.1| Deschampsia antarctica unknown cold induced protein mRNA, complete
           cds; nuclear gene for plastid product
          Length = 774

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                       
Query: 360 tcttgttgtagggtctcttcttgggcaggtcctccaggcacctcacctccgacatgcacg 419
           |||| ||||| || |||||||||||||| || |||||||| || ||||| ||||||||||
Sbjct: 461 tcttcttgtacgggctcttcttgggcagatcttccaggcatctgacctcggacatgcacg 402

                                                   
Query: 420 cgaaggactgggacttgccgtcgtagtacttggacaaccc 459
           ||||||||||||||||||||||||||||  ||||||||||
Sbjct: 401 cgaaggactgggacttgccgtcgtagtatctggacaaccc 362



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 169 gctcttgttgacggggatggcgggaggcctgtagagcatg 208
           ||||||||| || || || |||||||||||||||||||||
Sbjct: 643 gctcttgttcacaggaatcgcgggaggcctgtagagcatg 604
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 1e-23
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                            
Query: 376      cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
                ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 25887532 cttcttgcgcagatcctccaggcacctcacctccgacatgcacgcgaacgactgggactt 25887473

                                        
Query: 436      gccgtcgtagtacttggacaaccc 459
                 || ||||||||| ||||||||||
Sbjct: 25887472 cccctcgtagtacctggacaaccc 25887449
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>dbj|AK067043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B04, full
           insert sequence
          Length = 977

 Score =  119 bits (60), Expect = 1e-23
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                       
Query: 376 cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
           ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 cttcttgcgcagatcctccaggcacctcacctccgacatgcacgcgaacgactgggactt 501

                                   
Query: 436 gccgtcgtagtacttggacaaccc 459
            || ||||||||| ||||||||||
Sbjct: 500 cccctcgtagtacctggacaaccc 477
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>gb|AY111310.1| Zea mays CL13668_1 mRNA sequence
          Length = 528

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                       
Query: 376 cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
           ||||||| ||||||| |||||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 357 cttcttgcgcaggtcgtccaggcagcgcacctccgacatgcacgcgaacgactgggactt 416

                      
Query: 436 gccgtcgtagt 446
           ||| |||||||
Sbjct: 417 gccctcgtagt 427
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>gb|BT019309.1| Zea mays clone Contig982.F mRNA sequence
          Length = 723

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 379 cttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggacttgcc 438
           ||||||||||||||| ||||  | |||| ||| ||   ||||||| ||||| ||||||||
Sbjct: 404 cttgggcaggtcctcgaggccgcccaccgccgccagcgacgcgaacgactgcgacttgcc 463

                            
Query: 439 gtcgtagtacttggaca 455
           |||| || |||||||||
Sbjct: 464 gtcgaagaacttggaca 480
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>ref|NM_191137.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 528

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
           ||||||| | || ||||| ||||| |||||||| ||||| || || || || || |||||
Sbjct: 318 cttcttgcgtagatcctctaggcatctcacctcagacatacatgcaaaagattgagactt 259

                             
Query: 436 gccgtcgtagtacttgga 453
            ||||||||||| |||||
Sbjct: 258 tccgtcgtagtatttgga 241
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>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence
          Length = 197718

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 209   ctggagctgccgctccgcgcca 230
             ||||||||||||||||||||||
Sbjct: 51349 ctggagctgccgctccgcgcca 51370
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>ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone marrow stromal
            cell-derived) (ubl7), mRNA
          Length = 1391

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 186  tggcgggaggcctgtagagcatgctg 211
            |||| |||||||||||||||||||||
Sbjct: 1020 tggctggaggcctgtagagcatgctg 995
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 318    ggtcaccgtcgatctcgacgtg 339
              ||||||||||||||||||||||
Sbjct: 835999 ggtcaccgtcgatctcgacgtg 836020
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 81/100 (81%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                            
Query: 376      cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
                ||||||| | || ||||| ||||| |||||||| ||||| || || || || || |||||
Sbjct: 30879063 cttcttgcgtagatcctctaggcatctcacctcagacatacatgcaaaagattgagactt 30879122

                                                        
Query: 436      gccgtcgtagtacttggacaacccccctttcctgcaaaga 475
                 ||||||||||| ||||| || ||   |||||||||||||
Sbjct: 30879123 tccgtcgtagtatttggataatcc---tttcctgcaaaga 30879159
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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0638D12
          Length = 161277

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 81/100 (81%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                         
Query: 376   cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
             ||||||| | || ||||| ||||| |||||||| ||||| || || || || || |||||
Sbjct: 79430 cttcttgcgtagatcctctaggcatctcacctcagacatacatgcaaaagattgagactt 79489

                                                     
Query: 436   gccgtcgtagtacttggacaacccccctttcctgcaaaga 475
              ||||||||||| ||||| || ||   |||||||||||||
Sbjct: 79490 tccgtcgtagtatttggataatcc---tttcctgcaaaga 79526
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>dbj|AK121118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074B04, full
           insert sequence
          Length = 1070

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 cttcttgggcaggtcctccaggcacctcacctccgacatgcacgcgaaggactgggactt 435
           ||||||| | || ||||| ||||| |||||||| ||||| || || || || || |||||
Sbjct: 436 cttcttgcgtagatcctctaggcatctcacctcagacatacatgcaaaagattgagactt 377

                             
Query: 436 gccgtcgtagtacttgga 453
            ||||||||||| |||||
Sbjct: 376 tccgtcgtagtatttgga 359
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>emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12
          Length = 1391

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 186  tggcgggaggcctgtagagcatgctg 211
            |||| |||||||||||||||||||||
Sbjct: 1020 tggctggaggcctgtagagcatgctg 995
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>gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA clone
            IMAGE:7008166), partial cds
          Length = 1447

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 186  tggcgggaggcctgtagagcatgctg 211
            |||| |||||||||||||||||||||
Sbjct: 1068 tggctggaggcctgtagagcatgctg 1043
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>ref|XM_529681.1| PREDICTED: Pan troglodytes LOC453334 (LOC453334), mRNA
          Length = 1211

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 453 acaacccccctttcctgcaaa 473
           |||||||||||||||||||||
Sbjct: 594 acaacccccctttcctgcaaa 614
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>ref|XM_517703.1| PREDICTED: Pan troglodytes similar to KIAA0888 protein (LOC461805),
           mRNA
          Length = 2055

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 336 tacatttgacaggctaatagg 316
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>ref|XM_473655.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 618

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 417 acgcgaaggactgggacttgccgtcgtagtacttgga 453
           ||||||| ||||| |||||||||||| || |||||||
Sbjct: 259 acgcgaacgactgcgacttgccgtcgaagaacttgga 223
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>gb|BT019268.1| Zea mays clone Contig941.F mRNA sequence
          Length = 904

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 419 gcgaaggactgggacttgccgtcgtagtacttggaca 455
           ||||||||||| |||||||||||| || || ||||||
Sbjct: 476 gcgaaggactgcgacttgccgtcgaagaacctggaca 512
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>ref|XM_544374.2| PREDICTED: Canis familiaris similar to CG14692-PA (LOC487248), mRNA
          Length = 2013

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 156 tacatttgacaggctaatagg 136
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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 503   ttccattttgctactctgttg 523
             |||||||||||||||||||||
Sbjct: 88293 ttccattttgctactctgttg 88313
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>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 417    acgcgaaggactgggacttgccgtcgtagtacttgga 453
              ||||||| ||||| |||||||||||| || |||||||
Sbjct: 112688 acgcgaacgactgcgacttgccgtcgaagaacttgga 112724
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>emb|CR936791.1| Homo sapiens mRNA; cDNA DKFZp781C2356 (from clone DKFZp781C2356)
          Length = 6005

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 429 tacatttgacaggctaatagg 409
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>gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, complete sequence
          Length = 61738

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 36   tacatttgacaggctaatagg 56
            |||||||||||||||||||||
Sbjct: 8214 tacatttgacaggctaatagg 8234
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>dbj|AK057210.1| Homo sapiens cDNA FLJ32648 fis, clone SYNOV2001451, highly similar to
            MYOCYTE-SPECIFIC ENHANCER FACTOR 2B
          Length = 1683

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 423  aggactgggacttgccgtcgt 443
            |||||||||||||||||||||
Sbjct: 1013 aggactgggacttgccgtcgt 993
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>gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, complete sequence
          Length = 114875

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   gacagacactctgagtctcaa 136
             |||||||||||||||||||||
Sbjct: 37875 gacagacactctgagtctcaa 37895
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>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence
          Length = 174347

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    gacagacactctgagtctcaa 136
              |||||||||||||||||||||
Sbjct: 144212 gacagacactctgagtctcaa 144192
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>ref|XM_943531.1| PREDICTED: Homo sapiens KIAA0888 protein, transcript variant 3
           (KIAA0888), mRNA
          Length = 6666

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 156 tacatttgacaggctaatagg 136
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>ref|XM_032571.7| PREDICTED: Homo sapiens KIAA0888 protein, transcript variant 1
           (KIAA0888), mRNA
          Length = 6895

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 377 tacatttgacaggctaatagg 357
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>gb|AC016594.7| Homo sapiens chromosome 5 clone CTD-2010O3, complete sequence
          Length = 146235

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 36     tacatttgacaggctaatagg 56
              |||||||||||||||||||||
Sbjct: 123949 tacatttgacaggctaatagg 123969
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 417      acgcgaaggactgggacttgccgtcgtagtacttgga 453
                ||||||| ||||| |||||||||||| || |||||||
Sbjct: 29439672 acgcgaacgactgcgacttgccgtcgaagaacttgga 29439708
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 621     cgcgccggcggggaggccggc 641
               |||||||||||||||||||||
Sbjct: 2037348 cgcgccggcggggaggccggc 2037328



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 618     cgccgcgccggcggggaggccggc 641
               |||||||||||||| |||||||||
Sbjct: 2414327 cgccgcgccggcggcgaggccggc 2414304
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>emb|BX647536.1|HSM807682 Homo sapiens mRNA; cDNA DKFZp686E0692 (from clone DKFZp686E0692)
          Length = 5973

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 384 tacatttgacaggctaatagg 364
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>emb|BX640902.1|HSM807037 Homo sapiens mRNA; cDNA DKFZp686O1754 (from clone DKFZp686O1754)
          Length = 5782

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 200 tacatttgacaggctaatagg 180
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>gb|AC002126.1|AC002126 Homo sapiens DNA from chromosome 19-cosmids R30102:R29350:R27740
             containing MEF2B, genomic sequence, complete sequence
          Length = 89818

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   aggactgggacttgccgtcgt 443
             |||||||||||||||||||||
Sbjct: 36973 aggactgggacttgccgtcgt 36993
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>dbj|AK073181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001M05, full
           insert sequence
          Length = 964

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 417 acgcgaaggactgggacttgccgtcgtagtacttgga 453
           ||||||| ||||| |||||||||||| || |||||||
Sbjct: 408 acgcgaacgactgcgacttgccgtcgaagaacttgga 372
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>dbj|AB020695.1| Homo sapiens mRNA for KIAA0888 protein, partial cds
          Length = 3882

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tacatttgacaggctaatagg 56
           |||||||||||||||||||||
Sbjct: 199 tacatttgacaggctaatagg 179
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>ref|XM_510007.1| PREDICTED: Pan troglodytes similar to farnesyltransferase, CAAX
           box, beta (LOC452971), mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 813 cacctcacctccgacatgca 794
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>gb|AC113720.6| Rattus norvegicus 1 BAC CH230-117B1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 249629

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     ccatcctcaaggaacaaagaagag 98
              |||||| |||||||||||||||||
Sbjct: 218086 ccatccccaaggaacaaagaagag 218109
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>ref|NM_002028.3| Homo sapiens farnesyltransferase, CAAX box, beta (FNTB), mRNA
          Length = 2836

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 762 cacctcacctccgacatgca 743
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>ref|NM_178548.2| Homo sapiens transcription factor AP-2 epsilon (activating enhancer
            binding protein 2 epsilon) (TFAP2E), mRNA
          Length = 2201

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   tcctcaaggaacaaagaaga 97
            ||||||||||||||||||||
Sbjct: 2063 tcctcaaggaacaaagaaga 2082
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>gb|AY225134.1| Feldmannia irregularis virus a strain FirrV-1 contig B, partial
             sequence
          Length = 48352

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   cgtggctccggcatggcttc 355
             ||||||||||||||||||||
Sbjct: 33578 cgtggctccggcatggcttc 33559
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>gb|AY326454.1| Homo sapiens transcription factor AP-2 epsilon mRNA, complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   tcctcaaggaacaaagaaga 97
            ||||||||||||||||||||
Sbjct: 2063 tcctcaaggaacaaagaaga 2082
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>ref|XM_547686.2| PREDICTED: Canis familiaris similar to Nucleoporin SEH1-like
            (SEC13-like protein), transcript variant 1 (LOC490564),
            mRNA
          Length = 1858

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   tttacatttgacaggctaat 53
            ||||||||||||||||||||
Sbjct: 1786 tttacatttgacaggctaat 1805
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>emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chromosome 1 Contains the
             3' end of the SYT14 gene for synaptotagmin XIV, complete
             sequence
          Length = 125553

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tcctcaaggaacaaagaaga 97
             ||||||||||||||||||||
Sbjct: 15602 tcctcaaggaacaaagaaga 15621
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>emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chromosome Xq21.31-22.1
              Contains a karyopherin (importin) beta 1 (KPNB1)
              pseudogene, complete sequence
          Length = 147080

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ggatgcagaagcctctttac 38
              ||||||||||||||||||||
Sbjct: 103802 ggatgcagaagcctctttac 103783
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>emb|AL157951.5| Human DNA sequence from clone RP5-983H21 on chromosome 1p33-34.3
             Contains the 3' end of a novel protein similar to
             transcription factor AP-2 beta (activating enhancer
             binding protein 2 beta) and the 3' end of the PSMB2 gene
             for proteasome (prosome, macropain) subunit, beta type, 2,
             complete sequence
          Length = 29889

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    tcctcaaggaacaaagaaga 97
             ||||||||||||||||||||
Sbjct: 13938 tcctcaaggaacaaagaaga 13919
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>emb|BX248269.1|CNSLT1I8S human full-length cDNA clone CS0DC015YK16 of Neuroblastoma of Homo
           sapiens (human)
          Length = 2611

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 608 cacctcacctccgacatgca 589
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>emb|CR618315.1| full-length cDNA clone CS0DE007YE21 of Placenta of Homo sapiens
           (human)
          Length = 2710

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 665 cacctcacctccgacatgca 646
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>dbj|AK093298.1| Homo sapiens cDNA FLJ35979 fis, clone TESTI2013545, highly similar
           to PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (EC 2.5.1.-)
          Length = 2575

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 357 cacctcacctccgacatgca 338
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 622     gcgccggcggggaggccggc 641
               ||||||||||||||||||||
Sbjct: 3251605 gcgccggcggggaggccggc 3251586
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>emb|BX511237.5| Zebrafish DNA sequence from clone CH211-251M3 in linkage group 5,
             complete sequence
          Length = 52527

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aagcctctttacatttgaca 46
             ||||||||||||||||||||
Sbjct: 40721 aagcctctttacatttgaca 40740
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>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown, complete
              sequence
          Length = 202104

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    agggtctcttcttgggcagg 388
              ||||||||||||||||||||
Sbjct: 121399 agggtctcttcttgggcagg 121418
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>gb|AC134527.5| Mus musculus BAC clone RP24-502D8 from chromosome 8, complete sequence
          Length = 150065

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   ttccattttgctactctgtt 522
             ||||||||||||||||||||
Sbjct: 57662 ttccattttgctactctgtt 57643
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>dbj|AK087159.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030030I02 product:unclassifiable, full
           insert sequence
          Length = 1839

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 ccagccctggacagacactc 126
           ||||||||||||||||||||
Sbjct: 380 ccagccctggacagacactc 361
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>ref|NM_152982.2| Danio rerio myosin, heavy polypeptide 2, fast muscle specific
            (myhz2), mRNA
          Length = 5991

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aagcctctttacatttgaca 46
            ||||||||||||||||||||
Sbjct: 2636 aagcctctttacatttgaca 2617
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>emb|CR338837.1| Gallus gallus finished cDNA, clone ChEST850i12
          Length = 1327

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  aaagaagagacgcgaagcca 109
           ||||||||||||||||||||
Sbjct: 315 aaagaagagacgcgaagcca 334
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>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aagaagagacgcgaagccag 110
             ||||||||||||||||||||
Sbjct: 34675 aagaagagacgcgaagccag 34656
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>emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on chromosome 2, complete
            sequence
          Length = 114325

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  ccagccctggacagacactc 126
            ||||||||||||||||||||
Sbjct: 9118 ccagccctggacagacactc 9099
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>gb|BC071279.1| Danio rerio myosin, heavy polypeptide 2, fast muscle specific, mRNA
            (cDNA clone MGC:85728 IMAGE:6969669), complete cds
          Length = 5991

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aagcctctttacatttgaca 46
            ||||||||||||||||||||
Sbjct: 2636 aagcctctttacatttgaca 2617
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>gb|BC041175.1| Homo sapiens transcription factor AP-2 epsilon (activating enhancer
            binding protein 2 epsilon), mRNA (cDNA clone MGC:49007
            IMAGE:5786430), complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   tcctcaaggaacaaagaaga 97
            ||||||||||||||||||||
Sbjct: 2063 tcctcaaggaacaaagaaga 2082
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>gb|BC020232.1| Homo sapiens farnesyltransferase, CAAX box, beta, mRNA (cDNA clone
           MGC:31935 IMAGE:4652202), complete cds
          Length = 2686

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 612 cacctcacctccgacatgca 593
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>emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-840I19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190517

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   cacctcacctccgacatgca 417
             ||||||||||||||||||||
Sbjct: 78410 cacctcacctccgacatgca 78429
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>gb|BC078926.1| Rattus norvegicus similar to 9230105E10Rik protein, mRNA (cDNA
           clone MGC:93716 IMAGE:7106563), complete cds
          Length = 2470

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ccatcctcaaggaacaaagaagag 98
           |||||| |||||||||||||||||
Sbjct: 910 ccatccccaaggaacaaagaagag 933
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>emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in linkage group 5, complete
              sequence
          Length = 243510

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aagcctctttacatttgaca 46
              ||||||||||||||||||||
Sbjct: 222467 aagcctctttacatttgaca 222448
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>ref|NM_001014023.1| Rattus norvegicus similar to 9230105E10Rik protein (RGD1304579),
           mRNA
          Length = 2470

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ccatcctcaaggaacaaagaagag 98
           |||||| |||||||||||||||||
Sbjct: 910 ccatccccaaggaacaaagaagag 933
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>gb|BC013574.1| Homo sapiens cDNA clone IMAGE:3898137, containing frame-shift
           errors
          Length = 2707

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 635 cacctcacctccgacatgca 616
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>gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcription factor K (FoxK)
            mRNA, partial cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  gccgctccgcgccatcatca 236
            ||||||||||||||||||||
Sbjct: 1098 gccgctccgcgccatcatca 1117
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>gb|L10414.1|HUMFTB Human farnesyltransferase beta-subunit mRNA, complete cds
          Length = 1248

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 447 cacctcacctccgacatgca 428
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>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete
             sequence
          Length = 188892

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   caggcacctcacctccgaca 413
             ||||||||||||||||||||
Sbjct: 84377 caggcacctcacctccgaca 84358
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>gb|L00635.1|HUMFPTB Human farnesyl-protein transferase beta-subunit mRNA, complete cds
          Length = 1582

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 cacctcacctccgacatgca 417
           ||||||||||||||||||||
Sbjct: 616 cacctcacctccgacatgca 597
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>dbj|AB037179.1| Candida tropicalis CtPP1 gene for protein-tyrosine phosphatase,
            complete cds
          Length = 1773

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  gactaccttgctgctgttgt 290
            ||||||||||||||||||||
Sbjct: 1056 gactaccttgctgctgttgt 1037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,895,470
Number of Sequences: 3902068
Number of extensions: 5895470
Number of successful extensions: 116043
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115409
Number of HSP's gapped (non-prelim): 633
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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