| Clone Name | rbags30g04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I02, full insert sequence Length = 2023 Score = 188 bits (95), Expect = 1e-44 Identities = 197/231 (85%) Strand = Plus / Minus Query: 377 tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436 ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| || Sbjct: 1631 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 1572 Query: 437 tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496 ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct: 1571 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 1512 Query: 497 cacaactttcttgtcatcacttgttacatggatggtctcatcaacggctgttatattctt 556 || || ||| |||||||||||||||||||||| | |||||||| |||||||||||||| Sbjct: 1511 cataagttttttgtcatcacttgttacatggaaattttcatcaacagctgttatattctt 1452 Query: 557 tagtagatcatagctaacatcagcagctgcgtatgaccttggatgccattt 607 || ||||| ||| | ||||| |||||| |||||||| ||||||||||| Sbjct: 1451 taagagatcgtaggtgacatctgcagctctatatgacctcggatgccattt 1401
>gb|AY106981.1| Zea mays PCO102385 mRNA sequence Length = 923 Score = 151 bits (76), Expect = 3e-33 Identities = 191/229 (83%), Gaps = 4/229 (1%) Strand = Plus / Minus Query: 379 aaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaatt 438 ||||||| ||||||||||| ||| |||||||| | |||| |||| ||| || | ||| | Sbjct: 582 aaacagatgtgtaactggtaaattgcttcagtaggttgtcaagtgcttcaggattaaact 523 Query: 439 tcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgtca 498 ||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||| ||| Sbjct: 522 tcctagcgaaaagatagcacggtctctttgatccattccacaaacacggcttctgcatca 463 Query: 499 caactttcttgtcatcacttgttacatggatggtctcatcaacggctgttatattcttta 558 ||| |||||||||||||||||||||||||| | ||||||||| ||| || ||||| | Sbjct: 462 caagtttcttgtcatcacttgttacatggaagttctcatcaa----tgtaatgttcttca 407 Query: 559 gtagatcatagctaacatcagcagctgcgtatgaccttggatgccattt 607 ||||||||| | |||||| |||| |||||||||||||||||||| Sbjct: 406 agagatcataggtgacatcatcagcgctatatgaccttggatgccattt 358
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 117 bits (59), Expect = 4e-23 Identities = 113/131 (86%) Strand = Plus / Plus Query: 377 tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436 ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| || Sbjct: 26896690 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 26896749 Query: 437 tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496 ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct: 26896750 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 26896809 Query: 497 cacaactttct 507 || || ||||| Sbjct: 26896810 cataagtttct 26896820 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Plus Query: 544 ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603 ||||||||||||||| ||||| ||| | ||||| |||||| |||||||| ||||||| Sbjct: 26897177 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 26897236 Query: 604 attt 607 |||| Sbjct: 26897237 attt 26897240 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 ttgtcatcacttgttacatgga 528 |||||||||||||||||||||| Sbjct: 26897052 ttgtcatcacttgttacatgga 26897073
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 117 bits (59), Expect = 4e-23 Identities = 113/131 (86%) Strand = Plus / Plus Query: 377 tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436 ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| || Sbjct: 20451 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 20510 Query: 437 tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496 ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct: 20511 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 20570 Query: 497 cacaactttct 507 || || ||||| Sbjct: 20571 cataagtttct 20581 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Plus Query: 544 ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603 ||||||||||||||| ||||| ||| | ||||| |||||| |||||||| ||||||| Sbjct: 20938 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 20997 Query: 604 attt 607 |||| Sbjct: 20998 attt 21001 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 ttgtcatcacttgttacatgga 528 |||||||||||||||||||||| Sbjct: 20813 ttgtcatcacttgttacatgga 20834
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 117 bits (59), Expect = 4e-23 Identities = 113/131 (86%) Strand = Plus / Plus Query: 377 tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436 ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| || Sbjct: 151316 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 151375 Query: 437 tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496 ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct: 151376 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 151435 Query: 497 cacaactttct 507 || || ||||| Sbjct: 151436 cataagtttct 151446 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Plus Query: 544 ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603 ||||||||||||||| ||||| ||| | ||||| |||||| |||||||| ||||||| Sbjct: 151803 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 151862 Query: 604 attt 607 |||| Sbjct: 151863 attt 151866 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 ttgtcatcacttgttacatgga 528 |||||||||||||||||||||| Sbjct: 151678 ttgtcatcacttgttacatgga 151699
>gb|BT018993.1| Zea mays clone Contig481.F mRNA sequence Length = 1538 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 360 aaagaatcatgttgaagtcaaacagacgtgtaactggtgaatatcttcagtaagctgtcg 419 |||||||||||| ||| |||| | || |||||||||| ||||| |||||| | | ||| Sbjct: 1397 aaagaatcatgtagaactcaagccgatgtgtaactggagaatagcttcagcaggttgttc 1338 Query: 420 agtgtttcggggtaaaatttcctagcaaaaagatagcatggactctttgatccgttccac 479 | | ||| |||||||| || ||||||||||||||||| || || |||| ||| |||||| Sbjct: 1337 aaagattctgggtaaaactttctagcaaaaagatagcagggtctttttgttccattccac 1278 Query: 480 aaacatggcttctgtgtcacaactttcttgtcatcacttgt 520 | |||||| |||||||||||||||| || ||||||||||| Sbjct: 1277 atacatggggtctgtgtcacaacttttttatcatcacttgt 1237 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 571 taacatcagcagctgcgtatgaccttggatgccattt 607 ||||||| |||||| |||||||||||||||||||| Sbjct: 1186 taacatctgcagctctatatgaccttggatgccattt 1150
>dbj|AK067170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098C06, full insert sequence Length = 1968 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Minus Query: 404 cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463 |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| || Sbjct: 1510 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 1451 Query: 464 ctttgatccgttccacaaacatggcttctgtgtcacaactttcttgtcatcacttgt 520 ||||| ||||||||||| ||| || || ||||||||||||||| ||||||||||| Sbjct: 1450 ctttgttccgttccacatacagggtgtcattgtcacaactttcttatcatcacttgt 1394 Score = 42.1 bits (21), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaagaatggatnatataataacag 43 ||||||||||| |||||||||||| Sbjct: 1899 aaagaatggatcatataataacag 1876
>gb|AY104491.1| Zea mays PCO061820 mRNA sequence Length = 891 Score = 89.7 bits (45), Expect = 1e-14 Identities = 177/221 (80%) Strand = Plus / Minus Query: 387 gtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaatttcctagca 446 |||||||||| |||| |||||| ||| ||| || | ||| ||||| || || |||||| Sbjct: 771 gtgtaactggaaaatagcttcagcaagttgttcagagattctgggtagaactttctagca 712 Query: 447 aaaagatagcatggactctttgatccgttccacaaacatggcttctgtgtcacaactttc 506 ||||| |||||||| || |||| ||| ||||||| |||||| || |||||||||||||| Sbjct: 711 aaaaggtagcatggtctttttgttccattccacatacatgggatccgtgtcacaactttc 652 Query: 507 ttgtcatcacttgttacatggatggtctcatcaacggctgttatattctttagtagatca 566 || ||||||||||| | ||| |||||| || | ||||| ||||||| || ||| Sbjct: 651 ttatcatcacttgtaatgcggaaattctcattgacagacgttatgttctttaagagttca 592 Query: 567 tagctaacatcagcagctgcgtatgaccttggatgccattt 607 ||| ||||||| |||||| |||||||||||||||||||| Sbjct: 591 taggtaacatctgcagctctatatgaccttggatgccattt 551
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 404 cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463 |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| || Sbjct: 4133356 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 4133297 Query: 464 ctttgatccgttccacaaacatggcttctgtgtcacaactttct 507 ||||| ||||||||||| ||| || || |||||||||||||| Sbjct: 4133296 ctttgttccgttccacatacagggtgtcattgtcacaactttct 4133253 Score = 42.1 bits (21), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaagaatggatnatataataacag 43 ||||||||||| |||||||||||| Sbjct: 4133745 aaagaatggatcatataataacag 4133722
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 404 cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463 |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| || Sbjct: 43370 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 43311 Query: 464 ctttgatccgttccacaaacatggcttctgtgtcacaactttct 507 ||||| ||||||||||| ||| || || |||||||||||||| Sbjct: 43310 ctttgttccgttccacatacagggtgtcattgtcacaactttct 43267 Score = 42.1 bits (21), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaagaatggatnatataataacag 43 ||||||||||| |||||||||||| Sbjct: 43759 aaagaatggatcatataataacag 43736
>gb|AC117827.6| Mus musculus chromosome 1, clone RP24-88L2, complete sequence Length = 213655 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 aaacatacaaaaagcacaata 161 ||||||||||||||||||||| Sbjct: 79904 aaacatacaaaaagcacaata 79924
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 caaaaatatgatctccaactccaag 76 ||||| ||||||||||||||||||| Sbjct: 30515064 caaaactatgatctccaactccaag 30515040
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 caaaaatatgatctccaactccaag 76 ||||| ||||||||||||||||||| Sbjct: 46637 caaaactatgatctccaactccaag 46613
>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence Length = 188858 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 548 tatattctttagtagatcatagctaacat 576 |||||||||||||||||||| | |||||| Sbjct: 41243 tatattctttagtagatcattgttaacat 41215
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 caaaaatatgatctccaactccaag 76 ||||| ||||||||||||||||||| Sbjct: 30606486 caaaactatgatctccaactccaag 30606462
>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence Length = 115597 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 cacaatttttacacgaagaaaagag 324 ||||||||||| ||||||||||||| Sbjct: 19511 cacaatttttaaacgaagaaaagag 19487
>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence Length = 164190 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aggaaacatacaaaaagcac 157 |||||||||||||||||||| Sbjct: 157144 aggaaacatacaaaaagcac 157163
>emb|AL445663.10| Human DNA sequence from clone RP11-442A13 on chromosome 9 Contains a tumor protein, translationally-controlled 1 (TPT1) pseudogene, complete sequence Length = 192226 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaggacttaaaggaaacata 147 |||||||||||||||||||| Sbjct: 124678 aaggacttaaaggaaacata 124697
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gaatatcttcagtaagctgt 417 |||||||||||||||||||| Sbjct: 2686886 gaatatcttcagtaagctgt 2686867
>ref|NM_001017545.1| Danio rerio zgc:113339 (zgc:113339), mRNA Length = 3515 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cttctgtgtcacaactttct 507 |||||||||||||||||||| Sbjct: 94 cttctgtgtcacaactttct 75
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aacccgttgctcgaggccca 278 |||||||||||||||||||| Sbjct: 2462230 aacccgttgctcgaggccca 2462249
>gb|BC092160.1| Danio rerio zgc:113339, mRNA (cDNA clone MGC:113339 IMAGE:7141239), complete cds Length = 3515 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cttctgtgtcacaactttct 507 |||||||||||||||||||| Sbjct: 94 cttctgtgtcacaactttct 75
>emb|AL138479.4|CNS01DWS Human chromosome 14 DNA sequence BAC R-242G5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165228 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 tatattctttagtagatcat 567 |||||||||||||||||||| Sbjct: 4253 tatattctttagtagatcat 4272
>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174273 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 tatattctttagtagatcat 567 |||||||||||||||||||| Sbjct: 165016 tatattctttagtagatcat 165035
>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence Length = 225654 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 cttaaaggaaacatacaaaaagca 156 |||||||||||||| ||||||||| Sbjct: 44657 cttaaaggaaacattcaaaaagca 44680
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aacccgttgctcgaggccca 278 |||||||||||||||||||| Sbjct: 1854821 aacccgttgctcgaggccca 1854802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,360,072 Number of Sequences: 3902068 Number of extensions: 5360072 Number of successful extensions: 98804 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98581 Number of HSP's gapped (non-prelim): 223 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)