ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
2gb|AY106981.1| Zea mays PCO102385 mRNA sequence 151 3e-33
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
4dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
5dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
6gb|BT018993.1| Zea mays clone Contig481.F mRNA sequence 98 4e-17
7dbj|AK067170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
8gb|AY104491.1| Zea mays PCO061820 mRNA sequence 90 1e-14
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
11gb|AC117827.6| Mus musculus chromosome 1, clone RP24-88L2, compl... 42 2.1
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.1
13gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 42 2.1
14gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, c... 42 2.1
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple... 42 2.1
17gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, compl... 40 8.3
18emb|AL445663.10| Human DNA sequence from clone RP11-442A13 on ch... 40 8.3
19gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 8.3
20ref|NM_001017545.1| Danio rerio zgc:113339 (zgc:113339), mRNA 40 8.3
21dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 8.3
22gb|BC092160.1| Danio rerio zgc:113339, mRNA (cDNA clone MGC:1133... 40 8.3
23emb|AL138479.4|CNS01DWS Human chromosome 14 DNA sequence BAC R-2... 40 8.3
24emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-7... 40 8.3
25emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, co... 40 8.3
26gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 8.3

>dbj|AK065329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I02, full
            insert sequence
          Length = 2023

 Score =  188 bits (95), Expect = 1e-44
 Identities = 197/231 (85%)
 Strand = Plus / Minus

                                                                        
Query: 377  tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436
            ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| ||
Sbjct: 1631 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 1572

                                                                        
Query: 437  tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496
             ||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 1571 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 1512

                                                                        
Query: 497  cacaactttcttgtcatcacttgttacatggatggtctcatcaacggctgttatattctt 556
            || || ||| ||||||||||||||||||||||   | |||||||| ||||||||||||||
Sbjct: 1511 cataagttttttgtcatcacttgttacatggaaattttcatcaacagctgttatattctt 1452

                                                               
Query: 557  tagtagatcatagctaacatcagcagctgcgtatgaccttggatgccattt 607
            ||  ||||| ||| | ||||| ||||||   |||||||| |||||||||||
Sbjct: 1451 taagagatcgtaggtgacatctgcagctctatatgacctcggatgccattt 1401



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>gb|AY106981.1| Zea mays PCO102385 mRNA sequence
          Length = 923

 Score =  151 bits (76), Expect = 3e-33
 Identities = 191/229 (83%), Gaps = 4/229 (1%)
 Strand = Plus / Minus

                                                                       
Query: 379 aaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaatt 438
           ||||||| ||||||||||| |||  |||||||| | |||| |||| ||| || | ||| |
Sbjct: 582 aaacagatgtgtaactggtaaattgcttcagtaggttgtcaagtgcttcaggattaaact 523

                                                                       
Query: 439 tcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgtca 498
           ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||  |||
Sbjct: 522 tcctagcgaaaagatagcacggtctctttgatccattccacaaacacggcttctgcatca 463

                                                                       
Query: 499 caactttcttgtcatcacttgttacatggatggtctcatcaacggctgttatattcttta 558
           ||| |||||||||||||||||||||||||| | |||||||||    ||| || ||||| |
Sbjct: 462 caagtttcttgtcatcacttgttacatggaagttctcatcaa----tgtaatgttcttca 407

                                                            
Query: 559 gtagatcatagctaacatcagcagctgcgtatgaccttggatgccattt 607
             ||||||||| | |||||| ||||    ||||||||||||||||||||
Sbjct: 406 agagatcataggtgacatcatcagcgctatatgaccttggatgccattt 358



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                            
Query: 377      tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436
                ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| ||
Sbjct: 26896690 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 26896749

                                                                            
Query: 437      tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496
                 ||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 26896750 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 26896809

                           
Query: 497      cacaactttct 507
                || || |||||
Sbjct: 26896810 cataagtttct 26896820



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                            
Query: 544      ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603
                |||||||||||||||  ||||| ||| | ||||| ||||||   |||||||| |||||||
Sbjct: 26897177 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 26897236

                    
Query: 604      attt 607
                ||||
Sbjct: 26897237 attt 26897240



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 507      ttgtcatcacttgttacatgga 528
                ||||||||||||||||||||||
Sbjct: 26897052 ttgtcatcacttgttacatgga 26897073



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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0065C04
          Length = 165270

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                         
Query: 377   tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436
             ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| ||
Sbjct: 20451 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 20510

                                                                         
Query: 437   tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496
              ||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 20511 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 20570

                        
Query: 497   cacaactttct 507
             || || |||||
Sbjct: 20571 cataagtttct 20581



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 544   ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603
             |||||||||||||||  ||||| ||| | ||||| ||||||   |||||||| |||||||
Sbjct: 20938 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 20997

                 
Query: 604   attt 607
             ||||
Sbjct: 20998 attt 21001



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 507   ttgtcatcacttgttacatgga 528
             ||||||||||||||||||||||
Sbjct: 20813 ttgtcatcacttgttacatgga 20834



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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0051O02
          Length = 169532

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                          
Query: 377    tcaaacagacgtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaa 436
              ||||||||| || || |||||||||| |||||||| | |||| || ||||| ||||| ||
Sbjct: 151316 tcaaacagatgtatagctggtgaatagcttcagtaggttgtcaagagtttcagggtagaa 151375

                                                                          
Query: 437    tttcctagcaaaaagatagcatggactctttgatccgttccacaaacatggcttctgtgt 496
               ||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 151376 cttcctagcaaaaagatagcatggtctcttcgatccattccataagcatggcttctgtgt 151435

                         
Query: 497    cacaactttct 507
              || || |||||
Sbjct: 151436 cataagtttct 151446



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                          
Query: 544    ctgttatattctttagtagatcatagctaacatcagcagctgcgtatgaccttggatgcc 603
              |||||||||||||||  ||||| ||| | ||||| ||||||   |||||||| |||||||
Sbjct: 151803 ctgttatattctttaagagatcgtaggtgacatctgcagctctatatgacctcggatgcc 151862

                  
Query: 604    attt 607
              ||||
Sbjct: 151863 attt 151866



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 507    ttgtcatcacttgttacatgga 528
              ||||||||||||||||||||||
Sbjct: 151678 ttgtcatcacttgttacatgga 151699



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>gb|BT018993.1| Zea mays clone Contig481.F mRNA sequence
          Length = 1538

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 133/161 (82%)
 Strand = Plus / Minus

                                                                        
Query: 360  aaagaatcatgttgaagtcaaacagacgtgtaactggtgaatatcttcagtaagctgtcg 419
            |||||||||||| ||| |||| | || |||||||||| ||||| |||||| | | |||  
Sbjct: 1397 aaagaatcatgtagaactcaagccgatgtgtaactggagaatagcttcagcaggttgttc 1338

                                                                        
Query: 420  agtgtttcggggtaaaatttcctagcaaaaagatagcatggactctttgatccgttccac 479
            |  | ||| |||||||| || ||||||||||||||||| || || |||| ||| ||||||
Sbjct: 1337 aaagattctgggtaaaactttctagcaaaaagatagcagggtctttttgttccattccac 1278

                                                     
Query: 480  aaacatggcttctgtgtcacaactttcttgtcatcacttgt 520
            | ||||||  |||||||||||||||| || |||||||||||
Sbjct: 1277 atacatggggtctgtgtcacaacttttttatcatcacttgt 1237



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 571  taacatcagcagctgcgtatgaccttggatgccattt 607
            ||||||| ||||||   ||||||||||||||||||||
Sbjct: 1186 taacatctgcagctctatatgaccttggatgccattt 1150



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>dbj|AK067170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098C06, full
            insert sequence
          Length = 1968

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 404  cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463
            |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| ||
Sbjct: 1510 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 1451

                                                                     
Query: 464  ctttgatccgttccacaaacatggcttctgtgtcacaactttcttgtcatcacttgt 520
            ||||| ||||||||||| ||| ||  ||  ||||||||||||||| |||||||||||
Sbjct: 1450 ctttgttccgttccacatacagggtgtcattgtcacaactttcttatcatcacttgt 1394



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 20   aaagaatggatnatataataacag 43
            ||||||||||| ||||||||||||
Sbjct: 1899 aaagaatggatcatataataacag 1876



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>gb|AY104491.1| Zea mays PCO061820 mRNA sequence
          Length = 891

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 177/221 (80%)
 Strand = Plus / Minus

                                                                       
Query: 387 gtgtaactggtgaatatcttcagtaagctgtcgagtgtttcggggtaaaatttcctagca 446
           ||||||||||  |||| |||||| ||| |||  || | ||| ||||| || || ||||||
Sbjct: 771 gtgtaactggaaaatagcttcagcaagttgttcagagattctgggtagaactttctagca 712

                                                                       
Query: 447 aaaagatagcatggactctttgatccgttccacaaacatggcttctgtgtcacaactttc 506
           ||||| |||||||| || |||| ||| ||||||| ||||||  || ||||||||||||||
Sbjct: 711 aaaaggtagcatggtctttttgttccattccacatacatgggatccgtgtcacaactttc 652

                                                                       
Query: 507 ttgtcatcacttgttacatggatggtctcatcaacggctgttatattctttagtagatca 566
           || ||||||||||| |   |||   ||||||  || |  ||||| |||||||  || |||
Sbjct: 651 ttatcatcacttgtaatgcggaaattctcattgacagacgttatgttctttaagagttca 592

                                                    
Query: 567 tagctaacatcagcagctgcgtatgaccttggatgccattt 607
           ||| ||||||| ||||||   ||||||||||||||||||||
Sbjct: 591 taggtaacatctgcagctctatatgaccttggatgccattt 551



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                           
Query: 404     cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463
               |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| ||
Sbjct: 4133356 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 4133297

                                                           
Query: 464     ctttgatccgttccacaaacatggcttctgtgtcacaactttct 507
               ||||| ||||||||||| ||| ||  ||  ||||||||||||||
Sbjct: 4133296 ctttgttccgttccacatacagggtgtcattgtcacaactttct 4133253



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 20      aaagaatggatnatataataacag 43
               ||||||||||| ||||||||||||
Sbjct: 4133745 aaagaatggatcatataataacag 4133722



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                         
Query: 404   cttcagtaagctgtcgagtgtttcggggtaaaatttcctagcaaaaagatagcatggact 463
             |||||||| | ||| ||| | ||| |||||||| || ||||||||||| |||||||| ||
Sbjct: 43370 cttcagtaggttgttgagagcttctgggtaaaactttctagcaaaaaggtagcatggtct 43311

                                                         
Query: 464   ctttgatccgttccacaaacatggcttctgtgtcacaactttct 507
             ||||| ||||||||||| ||| ||  ||  ||||||||||||||
Sbjct: 43310 ctttgttccgttccacatacagggtgtcattgtcacaactttct 43267



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    aaagaatggatnatataataacag 43
             ||||||||||| ||||||||||||
Sbjct: 43759 aaagaatggatcatataataacag 43736



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>gb|AC117827.6| Mus musculus chromosome 1, clone RP24-88L2, complete sequence
          Length = 213655

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   aaacatacaaaaagcacaata 161
             |||||||||||||||||||||
Sbjct: 79904 aaacatacaaaaagcacaata 79924



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 52       caaaaatatgatctccaactccaag 76
                ||||| |||||||||||||||||||
Sbjct: 30515064 caaaactatgatctccaactccaag 30515040



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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    caaaaatatgatctccaactccaag 76
             ||||| |||||||||||||||||||
Sbjct: 46637 caaaactatgatctccaactccaag 46613



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>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence
          Length = 188858

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 548   tatattctttagtagatcatagctaacat 576
             |||||||||||||||||||| | ||||||
Sbjct: 41243 tatattctttagtagatcattgttaacat 41215



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 52       caaaaatatgatctccaactccaag 76
                ||||| |||||||||||||||||||
Sbjct: 30606486 caaaactatgatctccaactccaag 30606462



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>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence
          Length = 115597

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 300   cacaatttttacacgaagaaaagag 324
             ||||||||||| |||||||||||||
Sbjct: 19511 cacaatttttaaacgaagaaaagag 19487



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>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence
          Length = 164190

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    aggaaacatacaaaaagcac 157
              ||||||||||||||||||||
Sbjct: 157144 aggaaacatacaaaaagcac 157163



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>emb|AL445663.10| Human DNA sequence from clone RP11-442A13 on chromosome 9 Contains a
              tumor protein, translationally-controlled 1 (TPT1)
              pseudogene, complete sequence
          Length = 192226

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    aaggacttaaaggaaacata 147
              ||||||||||||||||||||
Sbjct: 124678 aaggacttaaaggaaacata 124697



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     gaatatcttcagtaagctgt 417
               ||||||||||||||||||||
Sbjct: 2686886 gaatatcttcagtaagctgt 2686867



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>ref|NM_001017545.1| Danio rerio zgc:113339 (zgc:113339), mRNA
          Length = 3515

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 cttctgtgtcacaactttct 507
           ||||||||||||||||||||
Sbjct: 94  cttctgtgtcacaactttct 75



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 259     aacccgttgctcgaggccca 278
               ||||||||||||||||||||
Sbjct: 2462230 aacccgttgctcgaggccca 2462249



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>gb|BC092160.1| Danio rerio zgc:113339, mRNA (cDNA clone MGC:113339 IMAGE:7141239),
           complete cds
          Length = 3515

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 cttctgtgtcacaactttct 507
           ||||||||||||||||||||
Sbjct: 94  cttctgtgtcacaactttct 75



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>emb|AL138479.4|CNS01DWS Human chromosome 14 DNA sequence BAC R-242G5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165228

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 548  tatattctttagtagatcat 567
            ||||||||||||||||||||
Sbjct: 4253 tatattctttagtagatcat 4272



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>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174273

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    tatattctttagtagatcat 567
              ||||||||||||||||||||
Sbjct: 165016 tatattctttagtagatcat 165035



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>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence
          Length = 225654

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   cttaaaggaaacatacaaaaagca 156
             |||||||||||||| |||||||||
Sbjct: 44657 cttaaaggaaacattcaaaaagca 44680



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     aacccgttgctcgaggccca 278
               ||||||||||||||||||||
Sbjct: 1854821 aacccgttgctcgaggccca 1854802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,360,072
Number of Sequences: 3902068
Number of extensions: 5360072
Number of successful extensions: 98804
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98581
Number of HSP's gapped (non-prelim): 223
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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