ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL157834.12| Human DNA sequence from clone RP11-310E22 on ch... 44 0.30
2emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chro... 44 0.30
3ref|XM_683222.1| PREDICTED: Danio rerio similar to heart alpha-k... 40 4.7
4emb|BX248399.5| Zebrafish DNA sequence from clone CH211-233A1 in... 40 4.7
5dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 4.7
6emb|CR925730.6| Zebrafish DNA sequence from clone DKEY-277M11 in... 40 4.7

>emb|AL157834.12| Human DNA sequence from clone RP11-310E22 on chromosome 10 Contains two
              novel genes, a pseudogene similar to part of PRKC apoptosis
              WT1 regulator (PAWR), the gene for a novel AMP-binding
              enzyme, the 3' end of the PDLIM1 gene for PDZ and LIM
              domain 1 (elfin) and a CpG island, complete sequence
          Length = 190394

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     gatgaagagaacatccagtaaa 105
              ||||||||||||||||||||||
Sbjct: 146881 gatgaagagaacatccagtaaa 146902



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>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete
              sequence
          Length = 197925

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 149    aagagatgggttttggggagca 170
              ||||||||||||||||||||||
Sbjct: 140805 aagagatgggttttggggagca 140784



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>ref|XM_683222.1| PREDICTED: Danio rerio similar to heart alpha-kinase (LOC559835),
            mRNA
          Length = 7260

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ggatgaagagaacatccagt 102
            ||||||||||||||||||||
Sbjct: 6891 ggatgaagagaacatccagt 6910



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>emb|BX248399.5| Zebrafish DNA sequence from clone CH211-233A1 in linkage group 10,
              complete sequence
          Length = 158884

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ggatgaagagaacatccagt 102
              ||||||||||||||||||||
Sbjct: 157316 ggatgaagagaacatccagt 157335



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     gcttcggcataacccaattg 244
               ||||||||||||||||||||
Sbjct: 2627312 gcttcggcataacccaattg 2627331



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>emb|CR925730.6| Zebrafish DNA sequence from clone DKEY-277M11 in linkage group 10,
             complete sequence
          Length = 34855

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ggatgaagagaacatccagt 102
             ||||||||||||||||||||
Sbjct: 34424 ggatgaagagaacatccagt 34405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,186,245
Number of Sequences: 3902068
Number of extensions: 2186245
Number of successful extensions: 38967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38944
Number of HSP's gapped (non-prelim): 23
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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