>gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence
          Length = 101016

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 443   gttgtcttcatcttccgagtctg 465
             |||||||||||||||||||||||
Sbjct: 92810 gttgtcttcatcttccgagtctg 92832

>gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like sequence
          Length = 101158

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 443   gttgtcttcatcttccgagtctg 465
             |||||||||||||||||||||||
Sbjct: 92892 gttgtcttcatcttccgagtctg 92914

>gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like sequence
          Length = 101095

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 443   gttgtcttcatcttccgagtctg 465
             |||||||||||||||||||||||
Sbjct: 92889 gttgtcttcatcttccgagtctg 92911

>gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like sequence
          Length = 101002

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 443   gttgtcttcatcttccgagtctg 465
             |||||||||||||||||||||||
Sbjct: 92796 gttgtcttcatcttccgagtctg 92818

>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 443    gttgtcttcatcttccgagtctg 465
              |||||||||||||||||||||||
Sbjct: 138997 gttgtcttcatcttccgagtctg 139019

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 543    gatccatccccgccctcttca 563
              |||||||||||||||||||||
Sbjct: 482097 gatccatccccgccctcttca 482117

>dbj|AP004543.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102b,
            complete sequence
          Length = 38490

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  ttcatcctcttcctctttatc 487
            |||||||||||||||||||||
Sbjct: 8741 ttcatcctcttcctctttatc 8721

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 564     tcgtagtcctccatgcccaa 583
               ||||||||||||||||||||
Sbjct: 1493688 tcgtagtcctccatgcccaa 1493707

>gb|BC055663.1| Danio rerio hypothetical protein LOC402830, mRNA (cDNA clone
            IMAGE:2600357), partial cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 460  agtctgattcatcctcttcctctt 483
            |||||||||||||| |||||||||
Sbjct: 1190 agtctgattcatccccttcctctt 1167

>ref|XM_993198.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 3 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357

>ref|XM_993170.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 2 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744

>ref|XM_922321.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 6 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357

>ref|XM_912306.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 4 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744

>ref|XM_898660.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 3 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357

>ref|XM_283153.6| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 1 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744

>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence
          Length = 219825

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 134   cagacttgcagcagcctattgatg 157
             |||||||||||||| |||||||||
Sbjct: 90822 cagacttgcagcagactattgatg 90799

>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence
          Length = 261151

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   accaagagaaggacatgacc 250
             ||||||||||||||||||||
Sbjct: 70780 accaagagaaggacatgacc 70761

>emb|Z50113.1|SPAC31A2 S.pombe chromosome I cosmid c31A2
          Length = 37273

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   tcttcactttctgaatctga 544
             ||||||||||||||||||||
Sbjct: 19643 tcttcactttctgaatctga 19624

>emb|X16880.1|GGLAMB2 Chicken mRNA for lamin B2
          Length = 2157

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 460  agtctgattcatcctcttcctctt 483
            |||||| |||||||||||||||||
Sbjct: 1771 agtctgcttcatcctcttcctctt 1748

>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
          Length = 348264

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 564    tcgtagtcctccatgcccaa 583
              ||||||||||||||||||||
Sbjct: 109431 tcgtagtcctccatgcccaa 109450

>emb|BX248586.1| Blochmannia floridanus complete genome; segment 3/3
          Length = 188557

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   actttctgaatctgatccat 549
             ||||||||||||||||||||
Sbjct: 79081 actttctgaatctgatccat 79100

>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14
          Length = 299450

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 564    tcgtagtcctccatgcccaa 583
              ||||||||||||||||||||
Sbjct: 175909 tcgtagtcctccatgcccaa 175928

>gb|BC043139.1| Mus musculus UTP11-like, U3 small nucleolar ribonucleoprotein,
            (yeast), mRNA (cDNA clone IMAGE:6822266), with apparent
            retained intron
          Length = 4034

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 134  cagacttgcagcagcctattgatg 157
            |||||||||||||| |||||||||
Sbjct: 2685 cagacttgcagcagactattgatg 2662

>gb|DQ388013.1| Fenneropenaeus merguiensis clone TAA30 microsatellite sequence
          Length = 221

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 466 attcatcctcttcctcttta 485
           ||||||||||||||||||||
Sbjct: 127 attcatcctcttcctcttta 146

>gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complete sequence
          Length = 197498

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    accaagagaaggacatgacc 250
              ||||||||||||||||||||
Sbjct: 104747 accaagagaaggacatgacc 104728

>ref|XM_692330.1| PREDICTED: Danio rerio hypothetical protein LOC402830 (LOC402830),
           partial mRNA
          Length = 3617

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 460 agtctgattcatcctcttcctctt 483
           |||||||||||||| |||||||||
Sbjct: 790 agtctgattcatccccttcctctt 767

>gb|AC090119.1|AC090119 Takifugu rubripes clone 242D16, complete sequence
          Length = 107344

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   atgaaaccacgcaccataaa 327
             ||||||||||||||||||||
Sbjct: 90406 atgaaaccacgcaccataaa 90387

>dbj|AK009876.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310047G20 product:similar to RNA
           POLYMERASE III SUBUNIT [Homo sapiens], full insert
           sequence
          Length = 3008

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 717 cctcttcatcgtagtcctcc 698

>ref|NM_001018323.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC31A2.10),
            partial mRNA
          Length = 1383

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 525  tcttcactttctgaatctga 544
            ||||||||||||||||||||
Sbjct: 1094 tcttcactttctgaatctga 1075

>dbj|AK049789.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530050A08 product: polymerase
           (RNA) III (DNA directed) polypeptide G, full insert
           sequence
          Length = 2631

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 377 cctcttcatcgtagtcctcc 358

>dbj|AK009045.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2300008H03 product:similar to RNA
           POLYMERASE III SUBUNIT [Homo sapiens], full insert
           sequence
          Length = 1670

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 715 cctcttcatcgtagtcctcc 696

>ref|NM_205285.1| Gallus gallus lamin B2 (LMNB2), mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 460  agtctgattcatcctcttcctctt 483
            |||||| |||||||||||||||||
Sbjct: 1771 agtctgcttcatcctcttcctctt 1748

>gb|AC154771.2| Mus musculus BAC clone RP24-448F8 from 13, complete sequence
          Length = 165376

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    cctcttcatcgtagtcctcc 575
              ||||||||||||||||||||
Sbjct: 120815 cctcttcatcgtagtcctcc 120834

>gb|BC066818.1| Mus musculus polymerase (RNA) III (DNA directed) polypeptide G,
           transcript variant 1, mRNA (cDNA clone MGC:76564
           IMAGE:30464021), complete cds
          Length = 3002

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 556 cctcttcatcgtagtcctcc 575
           ||||||||||||||||||||
Sbjct: 693 cctcttcatcgtagtcctcc 674

>gb|AD000018.1|MSGY151 Mycobacterium tuberculosis sequence from clone y151
          Length = 37036

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   tcgtagtcctccatgcccaa 583
             ||||||||||||||||||||
Sbjct: 22884 tcgtagtcctccatgcccaa 22865

>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    ttgtcttcatcttccgagtc 463
              ||||||||||||||||||||
Sbjct: 146898 ttgtcttcatcttccgagtc 146917

>gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosome 9, complete sequence
          Length = 134313

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 514   ctgctgtatcgtcttcactttctg 537
             ||||||| ||||||||||||||||
Sbjct: 10809 ctgctgtctcgtcttcactttctg 10832

>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete
             sequence
          Length = 208265

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 134   cagacttgcagcagcctattgatg 157
             |||||||||||||| |||||||||
Sbjct: 79264 cagacttgcagcagactattgatg 79241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,751,591
Number of Sequences: 3902068
Number of extensions: 4751591
Number of successful extensions: 93972
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93887
Number of HSP's gapped (non-prelim): 85
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)