ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30f02 |
|---|---|
| Clone Library Name | barley_pub |
>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)| Length = 1324 Score = 37.0 bits (84), Expect = 0.059 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -1 Query: 705 YEGAVKSFDASSKKHKVVYDDGDVERLQLKNERWEF-IDEEQDENPNEASDIGSRGRRGK 529 Y+G+V +D KH V Y+DG+ E L L E+ E+ + E+ + N S R+ Sbjct: 140 YDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWVVGEKSGDRFNRLKRGASALRKVV 199 Query: 528 QDSTGD 511 DS D Sbjct: 200 TDSDDD 205
>ASHH3_ARATH (Q945S8) Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43)| (ASH1-homolog protein 3) (Protein SET DOMAIN GROUP 7) Length = 363 Score = 37.0 bits (84), Expect = 0.059 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 699 GAVKSFDASSKKHKVVYDDGDVERLQLKNERWEFI 595 G V+ FD S+KH V+++DG E + + E WE + Sbjct: 329 GLVRHFDEYSRKHSVMFEDGVTEFVDMSREDWEIV 363
>ATX2_ARATH (Q9MA43) Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43)| (Trithorax-homolog protein 2) (TRX-homolog protein 2) (Protein SET DOMAIN GROUP 30) Length = 1193 Score = 35.8 bits (81), Expect = 0.13 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 705 YEGAVKSFDASSKKHKVVYDDGDVERLQLKNERWEFIDEEQD 580 Y G++ ++ +K H V Y DGD E L L+ E+ +F+ D Sbjct: 233 YPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISRDD 274
>ORC1_YEAST (P54784) Origin recognition complex subunit 1 (Origin recognition| complex protein 120 kDa subunit) Length = 914 Score = 35.0 bits (79), Expect = 0.22 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%) Frame = -1 Query: 648 DDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSN-------PPKKR 490 D G++ +L+ E E +E++DE EA S +RG++ G + PPKKR Sbjct: 273 DSGEISADELEEEEDE--EEDEDEEEKEARHTNSPRKRGRKIKLGKDDIDASVQPPPKKR 330 Query: 489 GR 484 GR Sbjct: 331 GR 332
>EAF7_CANAL (Q5A6Q7) Chromatin modification-related protein EAF7| Length = 445 Score = 34.7 bits (78), Expect = 0.29 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 582 DENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVV 472 D+ P E SD GSR RR S +PPK R R + V Sbjct: 353 DDKPAEPSDTGSRKRRAPPGSVSPPHPPKTRRRTRSV 389
>SFRP4_MOUSE (Q9Z1N6) Secreted frizzled-related sequence protein 4 precursor| (sFRP-4) (Frizzled-related protein 4) (FRP-4) Length = 351 Score = 33.9 bits (76), Expect = 0.50 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -1 Query: 633 ERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 ++L ++ +WE +EQ + I SR R T SNPPK +GRP SP Sbjct: 278 DQLSRRSIQWEERLQEQQRTIQDKKQIASRTSR-----TSRSNPPKSKGRPPAPKPASP 331
>MMD4_DROME (Q86B87) Modifier of mdg4| Length = 610 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Frame = -1 Query: 591 EEQDENPNEASDIGSRGRRGKQDSTGDSN------PPKKRGRPKVVGED 463 ++Q +N +E+S + + G +G ++ ++ PP+KRGRPK ED Sbjct: 378 KQQSQNYSESSFVDTSGDQGNTEAQAATSASATKIPPRKRGRPKTKVED 426
>AN32B_HUMAN (Q92688) Acidic leucine-rich nuclear phosphoprotein 32 family| member B (PHAPI2 protein) (Silver-stainable protein SSP29) (Acidic protein rich in leucines) Length = 251 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/61 (22%), Positives = 33/61 (54%) Frame = -1 Query: 702 EGAVKSFDASSKKHKVVYDDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQD 523 +G + FD + + V D D + + + E + +E++DE+ +E + G +G + K++ Sbjct: 184 DGEEEEFDEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDEEEEEGGKGEKRKRE 243 Query: 522 S 520 + Sbjct: 244 T 244
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSPV 454 ++ P + +GSRG G G+ P K GRP GE PV Sbjct: 110 ENGEPGQTGPVGSRGPSGAPGKAGEDGHPGKSGRP---GERGPV 150
>OTX1_RAT (Q63410) Homeobox protein OTX1| Length = 355 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Frame = +3 Query: 450 KSLDYPHPQPSDALFSWEDCCRQCCPACLSYHETRYQMLHWDSRLAPHQ*TPIFHS*VAD 629 +S +P PS + F DC P +H PHQ +P+ S +A Sbjct: 229 RSYGQGYPAPSSSYFGGVDCSSYLAPMHSHHH--------------PHQLSPMAPSSMAG 274 Query: 630 VQHHHRHT-QPCAFLKKHQMT*QHPH 704 HHH H P + H H H Sbjct: 275 HHHHHPHAHHPLSQSSGHHHHHHHHH 300
>OTX1_MOUSE (P80205) Homeobox protein OTX1| Length = 355 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Frame = +3 Query: 468 HPQPSDALFSWEDCCRQCCPACLSYHETRYQMLHWDSRLAPHQ*TPIFHS*VADVQHHHR 647 +P PS + F DC P +H PHQ +P+ S +A HHH Sbjct: 235 YPAPSSSYFGGVDCSSYLAPMHSHHH--------------PHQLSPMAPSSMAGHHHHHP 280 Query: 648 HT-QPCAFLKKHQMT*QHPH 704 H P + H H H Sbjct: 281 HAHHPLSQSSGHHHHHHHHH 300
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 32.0 bits (71), Expect = 1.9 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ G + PP +RG P Sbjct: 297 PGPAGEEGKRGARGEPGGAGPAGPPGERGAP 327 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVG 469 P E GSRG G+ G PP +RG P VG Sbjct: 321 PGERGAPGSRGFPGQDGIAGPKGPPGERGSPGAVG 355
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Frame = +3 Query: 468 HPQPSDALFSWEDCCRQCCPACLSYHETRYQMLHWDSRLAPHQ*TPIFHS*VADVQHHHR 647 +P PS + F DC P +H PHQ +P+ S +A HHH Sbjct: 235 YPTPSSSYFGGVDCSSYLAPMHSHHH--------------PHQLSPMAPSSMAGHHHHHP 280 Query: 648 HT-QPCAFLKKHQMT*QHPH 704 H P + H H H Sbjct: 281 HAHHPLSQSSGHHHHHHHHH 300
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 32.0 bits (71), Expect = 1.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -1 Query: 576 NPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 NP G G+ G + + GDS PP + G P + G P Sbjct: 844 NPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ G PP +RG P Sbjct: 413 PGPAGEEGKRGARGEPGGVGPIGPPGERGAP 443
>HMOX1_PIG (P32394) Heme oxygenase 1 (EC 1.14.99.3) (HO-1)| Length = 288 Score = 31.6 bits (70), Expect = 2.5 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -1 Query: 627 LQLKNERWEFIDEE-QDENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKV 475 +QL E E + ++ +D+ P++ASDI R QDST + P RG+P++ Sbjct: 211 IQLFEEVQELLTQDTKDQRPSQASDIRKRAGSRVQDSTPVTTP---RGKPQL 259
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGD---SNPPKKRGRPKVVGED 463 QD P + D G G+ G TG+ S PP KRG P G + Sbjct: 1360 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE 1403
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGD---SNPPKKRGRPKVVGED 463 QD P + D G G+ G TG+ S PP KRG P G + Sbjct: 1360 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE 1403
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGD---SNPPKKRGRPKVVGED 463 QD P + D G G+ G TG+ S PP KRG P G + Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE 1401
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGD---SNPPKKRGRPKVVGED 463 QD P + D G G+ G TG+ S PP KRG P G + Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE 1401
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 31.6 bits (70), Expect = 2.5 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = -1 Query: 582 DENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGE 466 D P EA GS G RG Q + GDS P +RG P G+ Sbjct: 364 DGYPGEA---GSPGERGDQGAKGDSGRPGRRGPPGDPGD 399
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump| 9) Length = 954 Score = 31.2 bits (69), Expect = 3.2 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = +1 Query: 490 SFLGRIAVASAVLLASPTTRP-DIRCFIGILVLLLINELPSFI 615 S++ +A A+ LA+ RP D + F+GI VLL+IN SFI Sbjct: 75 SWVMELAAIMAIALANGGGRPPDWQDFVGITVLLIINSTISFI 117
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 31.2 bits (69), Expect = 3.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ TG PP +RG P Sbjct: 456 PGPAGEEGKRGARGEPGPTGLPGPPGERGGP 486
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump| 8) Length = 948 Score = 31.2 bits (69), Expect = 3.2 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = +1 Query: 508 AVASAVLLASPTTRPDIRCFIGILVLLLINELPSFI 615 A+ + VL PD + FIGI+VLL+IN SFI Sbjct: 80 AIMAIVLANGGGKAPDWQDFIGIMVLLIINSTISFI 115
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump| 5) Length = 948 Score = 31.2 bits (69), Expect = 3.2 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = +1 Query: 490 SFLGRIAVASAVLLASPTTRP-DIRCFIGILVLLLINELPSFI 615 S++ +A A+ LA+ RP D + F+GI+ LLLIN SFI Sbjct: 69 SWVMEVAALMAIALANGGGRPPDWQDFVGIVCLLLINSTISFI 111
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 31.2 bits (69), Expect = 3.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ TG PP +RG P Sbjct: 460 PGPAGEEGKRGARGEPGPTGLPGPPGERGGP 490
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 30.8 bits (68), Expect = 4.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSPV 454 P E D G++GR G+ G+S P + G P G+ PV Sbjct: 1217 PGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPV 1256
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ G PP +RG P Sbjct: 454 PGPAGEEGKRGARGEPGGAGPIGPPGERGAP 484 Score = 30.4 bits (67), Expect = 5.5 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 576 NPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVG 469 NP A G G+ G + GDS PP + G P + G Sbjct: 885 NPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPGLEG 920
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGE 466 P +G RGR G+ GD PP G P GE Sbjct: 1621 PGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGE 1656 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -1 Query: 576 NPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSPV 454 +P + IG GR G GDS PP ++G P G PV Sbjct: 1590 DPGDRGPIGLTGRAGPP---GDSGPPGEKGDPGRPGPPGPV 1627
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ G PP +RG P Sbjct: 414 PGPAGEEGKRGARGEPGGAGPIGPPGERGAP 444
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 30.4 bits (67), Expect = 5.5 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = +1 Query: 490 SFLGRIAVASAVLLASPTTRP-DIRCFIGILVLLLINELPSFI 615 S++ +A A+ LA+ +P D + F+GI+VLL+IN SFI Sbjct: 70 SWVMEMAAIMAIALANGGGKPPDWQDFVGIIVLLVINSTISFI 112
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 5.5 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP---KVVGEDSP 457 P + + G RG G+ S G S PP RG P + G D P Sbjct: 372 PGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGP 413
>ZN524_HUMAN (Q96C55) Zinc finger protein 524| Length = 264 Score = 30.4 bits (67), Expect = 5.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Frame = -1 Query: 585 QDENPNEASDIGSRGRRGKQDSTGDSNP-------PKKRGRPKVVGEDSPV 454 ++E P S RGRRG++ S+ P+KRGRP G++ P+ Sbjct: 16 EEEKPLALSPPVPRGRRGRRPGGATSSNRTLKASLPRKRGRPPKSGQEPPL 66
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 30.4 bits (67), Expect = 5.5 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 32/95 (33%) Frame = -1 Query: 648 DDGDVERLQLKNER-WE-FIDEEQ------DENPNEASDI----------------GSRG 541 D+ D+E +N + WE I EEQ +E E +I GS G Sbjct: 1026 DEDDIELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEG 1085 Query: 540 RRGKQ--------DSTGDSNPPKKRGRPKVVGEDS 460 RR + DS + PKKRGRP+ + ++ Sbjct: 1086 RRSRSRRYSGSDSDSISERKRPKKRGRPRTIPREN 1120
>SET_RAT (Q63945) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) Length = 289 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -1 Query: 681 DASSKKHKVVYDDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGD 511 D ++ + DD D E + E E IDEE DE+ E D G G++D D Sbjct: 236 DMDDEEGEAEDDDDDDE----EEEGLEDIDEEGDEDEGEEDDDEDEGEEGEEDEGED 288
>SET_MOUSE (Q9EQU5) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) Length = 289 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -1 Query: 681 DASSKKHKVVYDDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGD 511 D ++ + DD D E + E E IDEE DE+ E D G G++D D Sbjct: 236 DMDDEEGEAEDDDDDDE----EEEGLEDIDEEGDEDEGEEDDDEDEGEEGEEDEGED 288
>RPGR_MOUSE (Q9R0X5) X-linked retinitis pigmentosa GTPase regulator (mRpgr)| Length = 1001 Score = 30.0 bits (66), Expect = 7.2 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +3 Query: 300 SWIHQKLSQGLRLLESCRQTHPCCFPC----QQIEATSPHLQHPFLQSSPPIWLKSLDYP 467 S +++ LS LR E R+ PC +E TS F SSPP L +YP Sbjct: 399 SSLNRSLSARLRRRE--RERPPCSASMVGTLPPLEGTSASTSAYFYPSSPPFHLSVNNYP 456 Query: 468 HPQPSDAL 491 PS+++ Sbjct: 457 EKSPSESM 464
>SFRP4_RAT (Q9JLS4) Secreted frizzled-related protein 4 precursor (sFRP-4)| (Frizzled-related protein) (FRP) (DDC-4 protein) Length = 348 Score = 30.0 bits (66), Expect = 7.2 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = -1 Query: 633 ERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 ++L ++ +WE +EQ + I SR T SNPPK +GR SP Sbjct: 278 DQLSRRSTQWEERLQEQQRTTQDKKQIASR--------TSRSNPPKPKGRSPASKPASP 328
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 30.0 bits (66), Expect = 7.2 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 P G++G RG++ TG S PP RG G P Sbjct: 2756 PGPPGGPGAKGPRGERGLTGSSGPPGPRGETGPPGPQGP 2794
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump| 2) Length = 947 Score = 30.0 bits (66), Expect = 7.2 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = +1 Query: 490 SFLGRIAVASAVLLASPTTRP-DIRCFIGILVLLLINELPSFI 615 S++ +A A+ LA+ RP D + F+GI+ LL+IN SFI Sbjct: 69 SWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFI 111
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump| 1) Length = 948 Score = 30.0 bits (66), Expect = 7.2 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = +1 Query: 490 SFLGRIAVASAVLLASPTTRP-DIRCFIGILVLLLINELPSFI 615 S++ A A+ LA+ RP D + F+GI+ LL+IN SFI Sbjct: 69 SWVMEAAALMAIALANGDNRPPDWQDFVGIICLLVINSTISFI 111
>PRP5_YEAST (P21372) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 849 Score = 30.0 bits (66), Expect = 7.2 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 627 LQLKNERWEFIDEEQDENPNEASDI 553 +QL +ER EF DE Q EN ++SD+ Sbjct: 497 VQLIHERSEFFDEVQSENDGQSSDV 521
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 30.0 bits (66), Expect = 7.2 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 32/95 (33%) Frame = -1 Query: 648 DDGDVERLQLKNER-WEFI---DE----EQDENPNEASDI----------------GSRG 541 D+ D+E +N + WE I D+ E++E E +I GS G Sbjct: 1028 DEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEG 1087 Query: 540 RRGKQ--------DSTGDSNPPKKRGRPKVVGEDS 460 RR + DS + PKKRGRP+ + ++ Sbjct: 1088 RRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPREN 1122
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 30.0 bits (66), Expect = 7.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 P + D G G +G Q G S PP + G+P GE P Sbjct: 625 PGDKGDAGPPGPQGLQGIPGTSGPPGENGKP---GEPGP 660
>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor| Length = 688 Score = 30.0 bits (66), Expect = 7.2 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 P G +G G+Q G S PP K G P GE P Sbjct: 341 PGTKGGPGDKGEPGQQGLPGVSGPPGKEGEPGPRGEIGP 379
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -1 Query: 648 DDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSNPPK-KRGRPKVV 472 D+G++ + K E D P E D G+ G +G++ G PP RG P Sbjct: 961 DEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGELGRYGPPGFHRGEPGEK 1020 Query: 471 GEDSP 457 G+ P Sbjct: 1021 GQPGP 1025
>HMGA2_HUMAN (P52926) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 109 Score = 30.0 bits (66), Expect = 7.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 546 RGRRGKQDSTGDSNPPKKRGRPKVVGEDSP 457 R R+ +Q+ TG+ +P + RGRPK SP Sbjct: 31 RPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
>BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain 1A| (ATP-utilizing chromatin assembly and remodely factor 1) (xACF1) (Fragment) Length = 627 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = -1 Query: 666 KHKVVYDDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSNPPKKRG 487 +H+ D + E +L + E +EEQ+E S ++D + P KRG Sbjct: 281 RHRYSMDSDEEEEEELDQKEEEEEEEEQEEL--------SESENEQEDEMSEEESPPKRG 332 Query: 486 RPKV 475 R KV Sbjct: 333 RAKV 336
>AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment)| Length = 448 Score = 29.6 bits (65), Expect = 9.4 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 16/63 (25%) Frame = -1 Query: 597 IDEEQDENPNEASDIGSRGRRGKQDSTGDSN----------------PPKKRGRPKVVGE 466 +DEE + P GS +RG+ D N PKKRGRP Sbjct: 191 MDEEGNPQPKPVPQPGSNKKRGRPKKPKDENESDYNNTSFSDSNTDGTPKKRGRPPKAKG 250 Query: 465 DSP 457 +SP Sbjct: 251 ESP 253
>NPT2B_PONPY (Q5REV9) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 689 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 9/41 (21%) Frame = +3 Query: 438 PIWLKSLDYPHPQPSDALFSWED---------CCRQCCPAC 533 P+W++SL +P DA+FS CCR CC AC Sbjct: 593 PLWMRSL-----KPWDAVFSKFTGCFQMRCCCCCRVCCRAC 628
>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)| (MyT1-L) Length = 1186 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -1 Query: 648 DDGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGDSN 505 DD D E ++ + E E +EE++E NE + R QD+ D N Sbjct: 142 DDEDGEDVEDEEEEEEEEEEEEEEEENEDHQMNCHNTRIMQDTEKDDN 189
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ +G PP +RG P Sbjct: 449 PGPAGEEGKRGARGEPGPSGLPGPPGERGGP 479
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 573 PNEASDIGSRGRRGKQDSTGDSNPPKKRGRP 481 P A + G RG RG+ +G PP +RG P Sbjct: 449 PGPAGEEGKRGARGEPGPSGLPGPPGERGGP 479
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 579 ENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSPV 454 + PN S G +GR+G + G+ P + G P + G P+ Sbjct: 2799 QGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPM 2840
>SPT51_ARATH (Q9STN3) Putative transcription elongation factor SPT5 homolog 1| Length = 1054 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = -1 Query: 645 DGDVERLQLKNERWEFIDEEQDENPNEASDIGSRGRRGKQDSTGD 511 DGD E L L+ E E DEE++E GSR +RG+ + D Sbjct: 12 DGDYEALDLEEEEEE--DEEEEEERGRGGG-GSRRKRGRSNFIDD 53
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 579 ENPNEASDIGSRGRRGKQDSTGDSNPPKKRGRPKVVGEDSPV 454 + PN S G +GR+G + G+ P + G P + G P+ Sbjct: 2794 QGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPM 2835 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,202,816 Number of Sequences: 219361 Number of extensions: 1484454 Number of successful extensions: 6684 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 5268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6610 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
