ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
2dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
3dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 4e-50
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
5dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
6dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
7gb|AY108395.1| Zea mays PCO142081 mRNA sequence 105 1e-19
8gb|AY103604.1| Zea mays PCO142082 mRNA sequence 105 1e-19
9gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence 98 3e-17
10emb|BX324153.4| Zebrafish DNA sequence from clone CH211-160M3 in... 46 0.085
11ref|XM_678316.1| PREDICTED: Danio rerio similar to gonadotropin-... 46 0.085
12gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete... 42 1.3
13gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete... 42 1.3
14gb|AC183598.2| Pan troglodytes BAC clone CH251-455P14 from chrom... 42 1.3
15gb|AC004905.2| Homo sapiens PAC clone RP5-845I21 from 7, complet... 42 1.3
16ref|NM_136267.3| Drosophila melanogaster CG3305-RA (CG3305), mRNA 42 1.3
17gb|AC096748.1| Homo sapiens BAC clone RP11-400D2 from 4, complet... 42 1.3
18gb|AY070618.1| Drosophila melanogaster RE72002 full length cDNA 42 1.3
19emb|AL116512.1|CNS01D8O Botrytis cinerea strain T4 cDNA library 42 1.3
20gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80... 42 1.3
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
22ref|XM_960967.1| Plasmodium falciparum 3D7 translation initiatio... 40 5.2
23gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 5.2
24gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
25emb|CR382398.1| Plasmodium falciparum chromosome 6, complete seq... 40 5.2
26gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, comple... 40 5.2
27gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14... 40 5.2
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
29gb|BC094141.1| Xenopus laevis hypothetical protein LOC443724, mR... 40 5.2
30dbj|AK174836.1| Ciona intestinalis cDNA, clone:cinc002k05, full ... 40 5.2
31dbj|AK174291.1| Ciona intestinalis cDNA, clone:cicl026f15, full ... 40 5.2
32dbj|AB088624.1| Sedum sarmentosum 18S ribosomal RNA, internal tr... 40 5.2
33dbj|AB088623.1| Sedum lineare 18S ribosomal RNA, internal transc... 40 5.2
34gb|BC110710.1| Xenopus laevis cDNA clone MGC:130707 IMAGE:739336... 40 5.2 
>dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E09, full
           insert sequence
          Length = 726

 Score =  214 bits (108), Expect = 2e-52
 Identities = 163/180 (90%), Gaps = 1/180 (0%)
 Strand = Plus / Minus

                                                                       
Query: 184 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
           |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 493 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 434

                                                                       
Query: 244 tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
           ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 433 tcttcatccttgttgcatgcgaa-gaagacctccaaaacgagctcacggttgaaccccat 375

                                                                       
Query: 304 tgactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
           || ||| |||||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 374 tgcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 315
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>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full
            insert sequence
          Length = 1567

 Score =  214 bits (108), Expect = 2e-52
 Identities = 163/180 (90%), Gaps = 1/180 (0%)
 Strand = Plus / Minus

                                                                        
Query: 184  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 1361 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1302

                                                                        
Query: 244  tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
            ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 1301 tcttcatccttgttgcatgcgaa-gaagacctccaaaacgagctcacggttgaaccccat 1243

                                                                        
Query: 304  tgactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
            || ||| |||||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 1242 tgcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 1183
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>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full
            insert sequence
          Length = 1629

 Score =  206 bits (104), Expect = 4e-50
 Identities = 163/180 (90%), Gaps = 2/180 (1%)
 Strand = Plus / Minus

                                                                        
Query: 184  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 1395 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1336

                                                                        
Query: 244  tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
            ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 1335 tcttcatccttgttgcatgcgaa-gaagacctccaa-acgagctcacggttgaaccccat 1278

                                                                        
Query: 304  tgactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
            || ||| |||||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 1277 tgcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 1218
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  155 bits (78), Expect = 1e-34
 Identities = 112/122 (91%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                           
Query: 184     aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
               |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 8737228 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 8737169

                                                                           
Query: 244     tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
               ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 8737168 tcttcatccttgttgcatgcgaa-gaagacctccaaaacgagctcacggttgaaccccat 8737110

                 
Query: 304     tg 305
               ||
Sbjct: 8737109 tg 8737108



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                  
Query: 313     ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
               |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 8736733 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 8736683
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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1001_B06
          Length = 134810

 Score =  155 bits (78), Expect = 1e-34
 Identities = 112/122 (91%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                        
Query: 184  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 7549 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 7490

                                                                        
Query: 244  tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
            ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 7489 tcttcatccttgttgcatgcgaa-gaagacctccaaaacgagctcacggttgaaccccat 7431

              
Query: 304  tg 305
            ||
Sbjct: 7430 tg 7429



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 313  ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
            |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 7054 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 7004
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score =  155 bits (78), Expect = 1e-34
 Identities = 112/122 (91%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                          
Query: 184    aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 243
              |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 152210 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 152151

                                                                          
Query: 244    tcttcatccctgttgcatgcaaaggaagacctccaacacaagctcacgattgaaccccat 303
              ||||||||| |||||||||| || |||||||||||| || |||||||| |||||||||||
Sbjct: 152150 tcttcatccttgttgcatgcgaa-gaagacctccaaaacgagctcacggttgaaccccat 152092

                
Query: 304    tg 305
              ||
Sbjct: 152091 tg 152090



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 313    ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 363
              |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 151715 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 151665
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>gb|AY108395.1| Zea mays PCO142081 mRNA sequence
          Length = 1776

 Score =  105 bits (53), Expect = 1e-19
 Identities = 123/145 (84%), Gaps = 1/145 (0%)
 Strand = Plus / Minus

                                                                        
Query: 202  tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 261
            |||||||||||||||||||| |  || |||||||| || || ||||| ||| ||||||||
Sbjct: 1349 tcaaactcgtggccatgatcaaggaggtagttggctgcaagctcttcgtccttgttgcat 1290

                                                                        
Query: 262  gcaaaggaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggat 321
            |||||| || || || | |||||||||| | ||||| ||||||  |||||||||||||||
Sbjct: 1289 gcaaagaaa-acttctagcacaagctcatggttgaagcccattccctcaagccgctggat 1231

                                     
Query: 322  ggcctcccgttcttctggagtaact 346
            |||||| ||||| ||||| ||||||
Sbjct: 1230 ggcctctcgttcctctggggtaact 1206
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>gb|AY103604.1| Zea mays PCO142082 mRNA sequence
          Length = 1672

 Score =  105 bits (53), Expect = 1e-19
 Identities = 123/145 (84%), Gaps = 1/145 (0%)
 Strand = Plus / Minus

                                                                        
Query: 202  tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 261
            |||||||| |||||||||||||  || |||||||| |  || ||||| ||| ||||||||
Sbjct: 1331 tcaaactcatggccatgatccaggaggtagttggctgtaagctcttcgtccttgttgcat 1272

                                                                        
Query: 262  gcaaaggaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggat 321
            |||||| || || || | |||||||||||| ||||||||||||  ||| |||||||||||
Sbjct: 1271 gcaaagaaa-acttctagcacaagctcacggttgaaccccattccctcgagccgctggat 1213

                                     
Query: 322  ggcctcccgttcttctggagtaact 346
             ||||||||||| ||||| ||||||
Sbjct: 1212 agcctcccgttcctctggggtaact 1188
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>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence
          Length = 819

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 122/145 (84%), Gaps = 1/145 (0%)
 Strand = Plus / Plus

                                                                       
Query: 202 tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 261
           |||||||| ||||| |||||||||||  ||||||| |  || ||||| ||| ||||||||
Sbjct: 213 tcaaactcatggccgtgatccaaaagggagttggctgtaagctcttcgtccttgttgcat 272

                                                                       
Query: 262 gcaaaggaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggat 321
           |||||| || || || | ||||||||||||  |||||||||||  ||| |||||||||||
Sbjct: 273 gcaaagaaa-acttctagcacaagctcacgggtgaaccccattccctcgagccgctggat 331

                                    
Query: 322 ggcctcccgttcttctggagtaact 346
            ||||||||||| ||||| ||||||
Sbjct: 332 agcctcccgttcctctggggtaact 356
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>emb|BX324153.4| Zebrafish DNA sequence from clone CH211-160M3 in linkage group 7,
             complete sequence
          Length = 95870

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 196   tgttcctcaaactcgtggccatg 218
             |||||||||||||||||||||||
Sbjct: 18296 tgttcctcaaactcgtggccatg 18318
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>ref|XM_678316.1| PREDICTED: Danio rerio similar to gonadotropin-releasing hormone
           receptor (LOC555723), mRNA
          Length = 1281

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 196 tgttcctcaaactcgtggccatg 218
           |||||||||||||||||||||||
Sbjct: 362 tgttcctcaaactcgtggccatg 384
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>gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete sequence
          Length = 171888

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     cacacagatatgatattaata 27
             |||||||||||||||||||||
Sbjct: 80985 cacacagatatgatattaata 81005
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>gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete sequence
          Length = 174573

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     cacacagatatgatattaata 27
             |||||||||||||||||||||
Sbjct: 12679 cacacagatatgatattaata 12659
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>gb|AC183598.2| Pan troglodytes BAC clone CH251-455P14 from chromosome 7, complete
              sequence
          Length = 216847

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 46     ccagcatacaagaaattgaaagtca 70
              |||||||||| ||||||||||||||
Sbjct: 186039 ccagcatacatgaaattgaaagtca 186063
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>gb|AC004905.2| Homo sapiens PAC clone RP5-845I21 from 7, complete sequence
          Length = 134350

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 46    ccagcatacaagaaattgaaagtca 70
             |||||||||| ||||||||||||||
Sbjct: 43571 ccagcatacatgaaattgaaagtca 43595
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>ref|NM_136267.3| Drosophila melanogaster CG3305-RA (CG3305), mRNA
          Length = 1605

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 7    cacacagatatgatattaata 27
            |||||||||||||||||||||
Sbjct: 1033 cacacagatatgatattaata 1013
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>gb|AC096748.1| Homo sapiens BAC clone RP11-400D2 from 4, complete sequence
          Length = 176749

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    atattaatatgtacttaaaaa 39
             |||||||||||||||||||||
Sbjct: 16943 atattaatatgtacttaaaaa 16963
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>gb|AY070618.1| Drosophila melanogaster RE72002 full length cDNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 7    cacacagatatgatattaata 27
            |||||||||||||||||||||
Sbjct: 1021 cacacagatatgatattaata 1001
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>emb|AL116512.1|CNS01D8O Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 230 agttggcagccagttcttcatccctgttgcatgcaaa 266
           |||||||||||| |||||||| | ||| |||||||||
Sbjct: 352 agttggcagccaattcttcattcttgtcgcatgcaaa 316
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>gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80 of 83 of the complete
             sequence
          Length = 323775

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     cacacagatatgatattaata 27
             |||||||||||||||||||||
Sbjct: 33619 cacacagatatgatattaata 33599
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 101      atattcagcagcaagatataagaa 124
                |||||||| |||||||||||||||
Sbjct: 10441366 atattcagaagcaagatataagaa 10441389
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>ref|XM_960967.1| Plasmodium falciparum 3D7 translation initiation factor IF-2
            (PFF0345w) partial mRNA
          Length = 2934

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  taacatctattgttgttcct 202
            ||||||||||||||||||||
Sbjct: 1906 taacatctattgttgttcct 1887
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 223    aaaagatagttggcagccagttcttcat 250
              ||||||||||| ||||||| ||||||||
Sbjct: 200273 aaaagatagtttgcagccatttcttcat 200246
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 101   atattcagcagcaagatataagaa 124
             |||||||| |||||||||||||||
Sbjct: 97919 atattcagaagcaagatataagaa 97942
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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    taacatctattgttgttcct 202
              ||||||||||||||||||||
Sbjct: 295765 taacatctattgttgttcct 295746
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>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence
          Length = 165929

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   tccctgttgcatgcaaagga 269
             ||||||||||||||||||||
Sbjct: 34148 tccctgttgcatgcaaagga 34129
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>gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14q24.3, complete sequence
          Length = 107731

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    taatatgtacttaaaaagga 42
             ||||||||||||||||||||
Sbjct: 10061 taatatgtacttaaaaagga 10080
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 101      atattcagcagcaagatataagaa 124
                |||||||| |||||||||||||||
Sbjct: 10439467 atattcagaagcaagatataagaa 10439490
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>gb|BC094141.1| Xenopus laevis hypothetical protein LOC443724, mRNA (cDNA clone
            MGC:114746 IMAGE:7010023), complete cds
          Length = 3983

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  tggcagccagttcttcatcc 252
            ||||||||||||||||||||
Sbjct: 3830 tggcagccagttcttcatcc 3849
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>dbj|AK174836.1| Ciona intestinalis cDNA, clone:cinc002k05, full insert sequence
          Length = 1713

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  gttcttctggagtaacttgaactg 353
            ||||||| ||||||||||||||||
Sbjct: 1071 gttcttcaggagtaacttgaactg 1048
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>dbj|AK174291.1| Ciona intestinalis cDNA, clone:cicl026f15, full insert sequence
          Length = 2985

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  gttcttctggagtaacttgaactg 353
            ||||||| ||||||||||||||||
Sbjct: 2528 gttcttcaggagtaacttgaactg 2505
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>dbj|AB088624.1| Sedum sarmentosum 18S ribosomal RNA, internal transcribed spacer 1,
           5.8S ribosomal RNA, internal transcribed spacer 2, 28S
           ribosomal RNA, partial and complete sequence
          Length = 677

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  tggcaagtagtagtgatatt 105
           ||||||||||||||||||||
Sbjct: 121 tggcaagtagtagtgatatt 140
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>dbj|AB088623.1| Sedum lineare 18S ribosomal RNA, internal transcribed spacer 1,
           5.8S ribosomal RNA, internal transcribed spacer 2, 28S
           ribosomal RNA, partial and complete sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  tggcaagtagtagtgatatt 105
           ||||||||||||||||||||
Sbjct: 121 tggcaagtagtagtgatatt 140
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>gb|BC110710.1| Xenopus laevis cDNA clone MGC:130707 IMAGE:7393366, complete cds
          Length = 3982

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  tggcagccagttcttcatcc 252
            ||||||||||||||||||||
Sbjct: 3831 tggcagccagttcttcatcc 3850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,851,272
Number of Sequences: 3902068
Number of extensions: 3851272
Number of successful extensions: 82179
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82056
Number of HSP's gapped (non-prelim): 114
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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