Clone Information

BLAST Search Result

Clone Name	rbags30e09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483574.1\| Oryza sativa (japonica cultivar-group), mRNA	250	5e-63
2	dbj\|AK106511.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	250	5e-63
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
4	dbj\|AP003948.2\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
5	ref\|NM_124492.1\| Arabidopsis thaliana S-adenosylmethionine-depen...	56	2e-04
6	gb\|BT010996.1\| Arabidopsis thaliana At5g51130 mRNA, complete cds	56	2e-04
7	gb\|BT010868.1\| Arabidopsis thaliana At5g51130 mRNA, complete cds	56	2e-04
8	ref\|XM_791228.1\| PREDICTED: Strongylocentrotus purpuratus simila...	56	2e-04
9	emb\|BX832242.1\|CNS0A1XC Arabidopsis thaliana Full-length cDNA Co...	56	2e-04
10	dbj\|AB023044.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	54	6e-04
11	emb\|AL596285.4\| Human DNA sequence from clone RP11-330K13 on chr...	48	0.038
12	emb\|CT573096.4\| RP43-083N14, complete sequence	48	0.038
13	gb\|AC005696.1\|AC005696 Homo sapiens chromosome 17, clone hRPK.7...	44	0.59
14	gb\|AF441733.2\| Mus musculus clone RP23-225M6 45S pre-ribosomal R...	42	2.3
15	emb\|AL356111.13\| Human DNA sequence from clone RP11-501G6 on chr...	42	2.3
16	gb\|AC009335.10\| Homo sapiens chromosome 17, clone RP11-20O2, com...	42	2.3
17	gb\|AC109039.10\| Rattus norvegicus 1 BAC CH230-145B9 (Children's ...	42	2.3
18	tpg\|BK000964.1\| TPA: TPA_exp: Mus musculus ribosomal DNA, comple...	42	2.3
19	gb\|BC017157.1\| Mus musculus bin3, bicoid-interacting 3, homolog ...	40	9.3
20	gb\|BC026876.1\| Mus musculus bin3, bicoid-interacting 3, homolog ...	40	9.3
21	ref\|NM_144913.2\| Mus musculus bin3, bicoid-interacting 3, homolo...	40	9.3
22	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.3
23	gb\|AY117121.1\| Rhizopogon vesiculosus microsatellite locus Rve2.67	40	9.3
24	gb\|AC112516.2\| Homo sapiens chromosome 3 clone RP11-350F11, comp...	40	9.3
25	gb\|AC121493.1\| Homo sapiens chromosome 3 clone RP11-88H12, compl...	40	9.3
26	gb\|AC090713.6\| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genom...	40	9.3
27	dbj\|AK139731.1\| Mus musculus 2 cells egg cDNA, RIKEN full-length...	40	9.3
28	gb\|AC074105.3\| Oryza sativa chromosome 10 clone OSJNBa0030B02, c...	40	9.3
29	dbj\|AK154415.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	9.3
30	gb\|AC095013.1\| Drosophila melanogaster, chromosome 3R, region 83...	40	9.3
31	gb\|AE001572.2\| Drosophila melanogaster Antennapedia complex (ANT...	40	9.3
32	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
33	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
34	ref\|XM_222048.3\| PREDICTED: Rattus norvegicus similar to Hypothe...	40	9.3
35	gb\|AC010027.6\| Drosophila melanogaster 3L BAC RP98-22B15 (Roswel...	40	9.3
36	gb\|BC088435.1\| Rattus norvegicus similar to Hypothetical protein...	40	9.3
37	gb\|AE003674.3\| Drosophila melanogaster chromosome 3R, section 10...	40	9.3
38	gb\|AE002656.4\| Drosophila melanogaster chromosome 3L, section 82...	40	9.3
39	dbj\|AP001528.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.3
40	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.3
41	gb\|AC001652.1\|AC001652 Drosophila melanogaster DNA sequence (P1 ...	40	9.3
42	gb\|AC125063.4\| Mus musculus BAC clone RP23-425N17 from 5, comple...	40	9.3
43	gb\|AC154809.2\| Mus musculus BAC clone RP24-528G7 from chromosome...	40	9.3
44	gb\|AY823670.1\| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1...	40	9.3
45	gb\|AC113434.34\| Mus musculus strain C57BL/6J clone rp23-456n12 m...	40	9.3

>ref|XM_483574.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1408

 Score =  250 bits (126), Expect = 5e-63
 Identities = 285/338 (84%)
 Strand = Plus / Minus

                                                                        
Query: 312  tttgtagtaaacttcaattgggcggtcaaaaccagcgacggatccgaccaatccgttggt 371
            ||||| ||||||||| |||||||||||||||||||  || |  ||  ||| |  ||  ||
Sbjct: 1045 tttgtggtaaacttcgattgggcggtcaaaaccagtaacagcgccctccagtttgtccgt 986

                                                                        
Query: 372  aatcacctctactgacctgaatcctaccttgtccagaagtacctcccggaatttctcagg 431
            || ||||||||| ||||||||||| | |||||| ||||||| |||||||||||| || ||
Sbjct: 985  aaccacctctaccgacctgaatccgatcttgtctagaagtatctcccggaatttatctgg 926

                                                                        
Query: 432  gtatatacagatatacttgaagttttctttggcaaactctgacactaatctgtttttcct 491
             | |||   |||    |||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 925  atgtattaggatggtattgaagttctctttggcaacctctgaaaccaatctgtttctcct 866

                                                                        
Query: 492  atacgaggtccaaggttgaggctccatgataaaaatccctcccggtcttagaagactcca 551
            ||| ||||||||||||||||||||||| |||||||  || |||||||||||||| |||||
Sbjct: 865  atatgaggtccaaggttgaggctccataataaaaactccacccggtcttagaagtctcca 806

                                                                        
Query: 552  tatcttcacaaacaaagtgattatgccatcatcaccccagttcaggtggatccattttgt 611
             ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 805  gatcttcacaaataaagtaattatgccatcgtcaccccagttcaggtggatccatttggt 746

                                                  
Query: 612  cacgctcaaacacatgatggtgtcatactgttctgaac 649
            ||| |||||||| |  || || ||||||||||||||||
Sbjct: 745  cacactcaaacaaacaattgtatcatactgttctgaac 708

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>dbj|AK106511.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H09, full
            insert sequence
          Length = 1407

 Score =  250 bits (126), Expect = 5e-63
 Identities = 285/338 (84%)
 Strand = Plus / Minus

                                                                        
Query: 312  tttgtagtaaacttcaattgggcggtcaaaaccagcgacggatccgaccaatccgttggt 371
            ||||| ||||||||| |||||||||||||||||||  || |  ||  ||| |  ||  ||
Sbjct: 1045 tttgtggtaaacttcgattgggcggtcaaaaccagtaacagcgccctccagtttgtccgt 986

                                                                        
Query: 372  aatcacctctactgacctgaatcctaccttgtccagaagtacctcccggaatttctcagg 431
            || ||||||||| ||||||||||| | |||||| ||||||| |||||||||||| || ||
Sbjct: 985  aaccacctctaccgacctgaatccgatcttgtctagaagtatctcccggaatttatctgg 926

                                                                        
Query: 432  gtatatacagatatacttgaagttttctttggcaaactctgacactaatctgtttttcct 491
             | |||   |||    |||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 925  atgtattaggatggtattgaagttctctttggcaacctctgaaaccaatctgtttctcct 866

                                                                        
Query: 492  atacgaggtccaaggttgaggctccatgataaaaatccctcccggtcttagaagactcca 551
            ||| ||||||||||||||||||||||| |||||||  || |||||||||||||| |||||
Sbjct: 865  atatgaggtccaaggttgaggctccataataaaaactccacccggtcttagaagtctcca 806

                                                                        
Query: 552  tatcttcacaaacaaagtgattatgccatcatcaccccagttcaggtggatccattttgt 611
             ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 805  gatcttcacaaataaagtaattatgccatcgtcaccccagttcaggtggatccatttggt 746

                                                  
Query: 612  cacgctcaaacacatgatggtgtcatactgttctgaac 649
            ||| |||||||| |  || || ||||||||||||||||
Sbjct: 745  cacactcaaacaaacaattgtatcatactgttctgaac 708

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 8e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                            
Query: 533      ccggtcttagaagactccatatcttcacaaacaaagtgattatgccatcatcaccccagt 592
                ||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 27059777 ccggtcttagaagtctccagatcttcacaaataaagtaattatgccatcgtcaccccagt 27059718

                                              
Query: 593      tcaggtggatccattttgtcacgctcaaac 622
                |||||||||||||||| ||||| |||||||
Sbjct: 27059717 tcaggtggatccatttggtcacactcaaac 27059688



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 468      ctctgacactaatctgtttttcctatacgaggtccaaggttgaggctccatgataaaaa 526
                |||||| || ||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct: 27059948 ctctgaaaccaatctgtttctcctatatgaggtccaaggttgaggctccataataaaaa 27059890



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 312      tttgtagtaaacttcaattgggcggtcaaaaccag 346
                ||||| ||||||||| |||||||||||||||||||
Sbjct: 27060578 tttgtggtaaacttcgattgggcggtcaaaaccag 27060544



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 396      taccttgtccagaagtacctcccggaattt 425
                ||||||||| ||||||| ||||||||||||
Sbjct: 27060406 taccttgtctagaagtatctcccggaattt 27060377

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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score =  123 bits (62), Expect = 8e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                         
Query: 533   ccggtcttagaagactccatatcttcacaaacaaagtgattatgccatcatcaccccagt 592
             ||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 30864 ccggtcttagaagtctccagatcttcacaaataaagtaattatgccatcgtcaccccagt 30805

                                           
Query: 593   tcaggtggatccattttgtcacgctcaaac 622
             |||||||||||||||| ||||| |||||||
Sbjct: 30804 tcaggtggatccatttggtcacactcaaac 30775



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 468   ctctgacactaatctgtttttcctatacgaggtccaaggttgaggctccatgataaaaa 526
             |||||| || ||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct: 31035 ctctgaaaccaatctgtttctcctatatgaggtccaaggttgaggctccataataaaaa 30977



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 312   tttgtagtaaacttcaattgggcggtcaaaaccag 346
             ||||| ||||||||| |||||||||||||||||||
Sbjct: 31665 tttgtggtaaacttcgattgggcggtcaaaaccag 31631



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 396   taccttgtccagaagtacctcccggaattt 425
             ||||||||| ||||||| ||||||||||||
Sbjct: 31493 taccttgtctagaagtatctcccggaattt 31464

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>ref|NM_124492.1| Arabidopsis thaliana S-adenosylmethionine-dependent
           methyltransferase/ methyltransferase AT5G51130 mRNA,
           complete cds
          Length = 957

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 568 gtgattatgccatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 623
           |||||||  |||||||||||||||||||  || | |||||||||||| ||||||||
Sbjct: 698 gtgattaaaccatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 643

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>gb|BT010996.1| Arabidopsis thaliana At5g51130 mRNA, complete cds
          Length = 957

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 568 gtgattatgccatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 623
           |||||||  |||||||||||||||||||  || | |||||||||||| ||||||||
Sbjct: 698 gtgattaaaccatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 643

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>gb|BT010868.1| Arabidopsis thaliana At5g51130 mRNA, complete cds
          Length = 1207

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 568 gtgattatgccatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 623
           |||||||  |||||||||||||||||||  || | |||||||||||| ||||||||
Sbjct: 778 gtgattaaaccatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 723

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>ref|XM_791228.1| PREDICTED: Strongylocentrotus purpuratus similar to related to
           bicoid interacting protein (2M394) (LOC591676), mRNA
          Length = 1117

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 581 catcaccccagttcaggtggatccattttgtcacgctcaaacacatgatggtgtcatact 640
           |||| ||||||||||| |||||||| || || ||||||| ||||| ||||||||| ||||
Sbjct: 253 catcgccccagttcagatggatccacttggtgacgctcagacacaagatggtgtcgtact 194

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>emb|BX832242.1|CNS0A1XC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH60ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1363

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 568 gtgattatgccatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 623
           |||||||  |||||||||||||||||||  || | |||||||||||| ||||||||
Sbjct: 891 gtgattaaaccatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 836

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>dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22
          Length = 87180

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 568   gtgattatgccatcatcaccccagttcaggtggatccattttgtcacgctcaaac 622
             |||||||  |||||||||||||||||||  || | |||||||||||| |||||||
Sbjct: 17048 gtgattaaaccatcatcaccccagttcaaatgaacccattttgtcacactcaaac 16994

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>emb|AL596285.4| Human DNA sequence from clone RP11-330K13 on chromosome X Contains the
             gene for brain cell membrane protein 1 (BCMP1) and a CpG
             island, complete sequence
          Length = 110820

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 63    tcacaaaatattgaaaactaccta 86
             ||||||||||||||||||||||||
Sbjct: 24601 tcacaaaatattgaaaactaccta 24578

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>emb|CT573096.4| RP43-083N14, complete sequence
          Length = 169666

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 63     tcacaaaatattgaaaactaccta 86
              ||||||||||||||||||||||||
Sbjct: 108788 tcacaaaatattgaaaactaccta 108811

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>gb|AC005696.1|AC005696 Homo sapiens chromosome 17, clone  hRPK.74_E_22, complete sequence
          Length = 177411

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 65    acaaaatattgaaaactaccta 86
             ||||||||||||||||||||||
Sbjct: 19987 acaaaatattgaaaactaccta 19966

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>gb|AF441733.2| Mus musculus clone RP23-225M6 45S pre-ribosomal RNA gene, partial
            sequence; and intergenic spacer, partial sequence
          Length = 31129

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   tatacaaaggctgatagccta 57
            |||||||||||||||||||||
Sbjct: 3513 tatacaaaggctgatagccta 3493

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>emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 150955

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   ccaatccatagcattccttgg 129
             |||||||||||||||||||||
Sbjct: 71030 ccaatccatagcattccttgg 71010

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>gb|AC009335.10| Homo sapiens chromosome 17, clone RP11-20O2, complete sequence
          Length = 159611

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   ctcagggtatatacagatata 446
             |||||||||||||||||||||
Sbjct: 18180 ctcagggtatatacagatata 18160

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>gb|AC109039.10| Rattus norvegicus 1 BAC CH230-145B9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 215780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   tctgggtaagaggcaaccatc 296
             |||||||||||||||||||||
Sbjct: 98897 tctgggtaagaggcaaccatc 98917

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>tpg|BK000964.1| TPA: TPA_exp: Mus musculus ribosomal DNA, complete repeating unit
          Length = 45309

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    tatacaaaggctgatagccta 57
             |||||||||||||||||||||
Sbjct: 15765 tatacaaaggctgatagccta 15745

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>gb|BC017157.1| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila), mRNA
           (cDNA clone IMAGE:4911622), complete cds
          Length = 1473

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 580 tcatcaccccagttcaggtg 599
           ||||||||||||||||||||
Sbjct: 620 tcatcaccccagttcaggtg 601

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>gb|BC026876.1| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila), mRNA
            (cDNA clone MGC:30590 IMAGE:3662118), complete cds
          Length = 2640

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 580  tcatcaccccagttcaggtg 599
            ||||||||||||||||||||
Sbjct: 1820 tcatcaccccagttcaggtg 1801

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>ref|NM_144913.2| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila)
            (Bcdin3), mRNA
          Length = 2640

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 580  tcatcaccccagttcaggtg 599
            ||||||||||||||||||||
Sbjct: 1820 tcatcaccccagttcaggtg 1801

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 441      gatatacttgaagttttctt 460
                ||||||||||||||||||||
Sbjct: 31246220 gatatacttgaagttttctt 31246201

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>gb|AY117121.1| Rhizopogon vesiculosus microsatellite locus Rve2.67
          Length = 317

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  taccaccaccacccaatcca 116
           ||||||||||||||||||||
Sbjct: 181 taccaccaccacccaatcca 200

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>gb|AC112516.2| Homo sapiens chromosome 3 clone RP11-350F11, complete sequence
          Length = 184868

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   gttttctttggcaaactctg 472
             ||||||||||||||||||||
Sbjct: 17070 gttttctttggcaaactctg 17051

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>gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    gttttctttggcaaactctg 472
              ||||||||||||||||||||
Sbjct: 143575 gttttctttggcaaactctg 143556

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>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete
             sequence
          Length = 146022

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   gatatacttgaagttttctt 460
             ||||||||||||||||||||
Sbjct: 53461 gatatacttgaagttttctt 53442

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>dbj|AK139731.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020013O05 product:hypothetical Bicoid-interacting
           3/Generic methyltransferase/SAM (and some other
           nucleotide) binding motif containing protein, full
           insert sequence
          Length = 1397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 580 tcatcaccccagttcaggtg 599
           ||||||||||||||||||||
Sbjct: 583 tcatcaccccagttcaggtg 564

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>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    ggtatatacagatatacttg 450
              ||||||||||||||||||||
Sbjct: 139683 ggtatatacagatatacttg 139702

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>dbj|AK154415.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630030B21
            product:hypothetical Bicoid-interacting 3/Generic
            methyltransferase/SAM (and some other nucleotide) binding
            motif/Glycine-rich region profile containing protein,
            full insert sequence
          Length = 3128

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 580  tcatcaccccagttcaggtg 599
            ||||||||||||||||||||
Sbjct: 2314 tcatcaccccagttcaggtg 2295

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>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone
              BACR19I14, complete sequence
          Length = 175648

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    gtcatatttgtaccaaagaa 210
              ||||||||||||||||||||
Sbjct: 111821 gtcatatttgtaccaaagaa 111802

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>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence
          Length = 429825

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    gtcatatttgtaccaaagaa 210
              ||||||||||||||||||||
Sbjct: 410642 gtcatatttgtaccaaagaa 410661

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 431     ggtatatacagatatacttg 450
               ||||||||||||||||||||
Sbjct: 2812907 ggtatatacagatatacttg 2812926

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 441      gatatacttgaagttttctt 460
                ||||||||||||||||||||
Sbjct: 31336736 gatatacttgaagttttctt 31336717

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>ref|XM_222048.3| PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC28888
            (LOC304361), mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 580  tcatcaccccagttcaggtg 599
            ||||||||||||||||||||
Sbjct: 2101 tcatcaccccagttcaggtg 2082

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>gb|AC010027.6| Drosophila melanogaster 3L BAC RP98-22B15 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 168059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   ccattttgtcacgctcaaac 622
             ||||||||||||||||||||
Sbjct: 40603 ccattttgtcacgctcaaac 40622

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>gb|BC088435.1| Rattus norvegicus similar to Hypothetical protein MGC28888, mRNA
           (cDNA clone IMAGE:7125256), partial cds
          Length = 1537

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 580 tcatcaccccagttcaggtg 599
           ||||||||||||||||||||
Sbjct: 703 tcatcaccccagttcaggtg 684

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>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete
              sequence
          Length = 298020

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    gtcatatttgtaccaaagaa 210
              ||||||||||||||||||||
Sbjct: 165965 gtcatatttgtaccaaagaa 165946

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>gb|AE002656.4| Drosophila melanogaster chromosome 3L, section 82 of 83 of the complete
             sequence
          Length = 203636

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   ccattttgtcacgctcaaac 622
             ||||||||||||||||||||
Sbjct: 75164 ccattttgtcacgctcaaac 75183

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>dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736K20, complete
              sequence
          Length = 155523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aaaatattgaaaactaccta 86
              ||||||||||||||||||||
Sbjct: 119596 aaaatattgaaaactaccta 119577

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 431     ggtatatacagatatacttg 450
               ||||||||||||||||||||
Sbjct: 2812858 ggtatatacagatatacttg 2812877

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>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete
             sequence
          Length = 85757

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   gtcatatttgtaccaaagaa 210
             ||||||||||||||||||||
Sbjct: 19184 gtcatatttgtaccaaagaa 19165

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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    tcatcaccccagttcaggtg 599
              ||||||||||||||||||||
Sbjct: 102769 tcatcaccccagttcaggtg 102750

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>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence
          Length = 191524

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   ctctactgacctgaatccta 397
             ||||||||||||||||||||
Sbjct: 33050 ctctactgacctgaatccta 33031

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>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1
             (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5
             (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb)
             gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete
             sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3
             (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1)
             pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and
             GJE1 (Gje1) genes, complete cds
          Length = 194414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   tcatcaccccagttcaggtg 599
             ||||||||||||||||||||
Sbjct: 10255 tcatcaccccagttcaggtg 10274

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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    tcatcaccccagttcaggtg 599
              ||||||||||||||||||||
Sbjct: 130456 tcatcaccccagttcaggtg 130437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,492,645
Number of Sequences: 3902068
Number of extensions: 6492645
Number of successful extensions: 116744
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116516
Number of HSP's gapped (non-prelim): 228
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result