ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103680.1| Zea mays PCO080984 mRNA sequence 186 7e-44
2dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
3gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence 137 6e-29
4gb|AY108406.1| Zea mays PCO080983 mRNA sequence 137 6e-29
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
6gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 133 9e-28
7ref|NM_189556.2| Oryza sativa (japonica cultivar-group), mRNA 88 5e-14
8dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-14
9dbj|AK061691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-14
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
11dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
12dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
13gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 2.5
14gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, comple... 42 2.5
15gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 ma... 42 2.5
16emb|AL356952.18| Human DNA sequence from clone RP11-809M12 on ch... 42 2.5
17emb|AL138997.18| Human DNA sequence from clone RP11-10O23 on chr... 42 2.5
18gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosom... 42 2.5
19gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, com... 42 2.5
20emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17 42 2.5
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
22gb|AE009707.1| Brucella melitensis 16M chromosome II, section 69... 42 2.5
23dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
24gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 2.5
25dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
26dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
27emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 2.5
28gb|AC069563.28| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 2.5
29gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, co... 40 10.0
30gb|AC148114.8| Mus musculus chromosome 8, clone RP24-134B6, comp... 40 10.0
31emb|AL391316.7| Human DNA sequence from clone XX-YM901F10 on chr... 40 10.0
32emb|AL133402.10| Human DNA sequence from clone RP5-1077H22 on ch... 40 10.0
33gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, co... 40 10.0
34gb|AC026118.17| Homo sapiens 3 BAC RP11-67F24 (Roswell Park Canc... 40 10.0
35gb|AC107908.3| Homo sapiens chromosome 15, clone CTD1-2291N1, co... 40 10.0
36gb|AC097489.2| Homo sapiens BAC clone RP11-226A18 from 4, comple... 40 10.0
37gb|AC097712.3| Homo sapiens BAC clone RP11-216H12 from 4, comple... 40 10.0
38gb|AC160981.2| Mus musculus BAC clone RP23-363D11 from chromosom... 40 10.0
39gb|AF303741.1|AF303741 Chilo iridescent virus complete genome 40 10.0
40dbj|AK016006.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 10.0
41dbj|AK015811.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 10.0
42gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosom... 40 10.0
43gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Can... 40 10.0
44ref|NM_031749.1| Rattus norvegicus glucosidase 1 (Gcs1), mRNA 40 10.0
45gb|AF087431.1|AF087431 Rattus norvegicus glycoprotein processing... 40 10.0
46gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, comple... 40 10.0
47gb|AC124747.3| Mus musculus BAC clone RP23-243O9 from 12, comple... 40 10.0
48ref|NM_029061.1| Mus musculus coiled-coil domain containing 7 (C... 40 10.0
49gb|AY854152.1| Mus musculus testis-specific antigen mRNA, comple... 40 10.0 
>gb|AY103680.1| Zea mays PCO080984 mRNA sequence
          Length = 1931

 Score =  186 bits (94), Expect = 7e-44
 Identities = 196/230 (85%)
 Strand = Plus / Minus

                                                                        
Query: 457  ggcggggtctgtggttttggcgctggccttggtttggtcatgatgggtttgcagaacctg 516
            ||||| ||||| || || || |||||| | ||||| |||||||| || ||||||||||| 
Sbjct: 1484 ggcggagtctgcggcttaggagctggcttcggtttcgtcatgatcggcttgcagaaccta 1425

                                                                        
Query: 517  tcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagcatgcttc 576
            ||||||| |||||| |||||||| | ||||| | ||||||| || | |||||||||||| 
Sbjct: 1424 tcaagtgtttcagctttcttcttaaggtcagcagcaaggagtaccgaattagcatgcttt 1365

                                                                        
Query: 577  ggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgagcactca 636
            || |||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 1364 ggcagagcatcctgctgctgctttttctctattagccaagtctctgcttccgaacactca 1305

                                                              
Query: 637  ttaacaaccttttgcttctctgatatgtctatgtgatcaaacttttggtc 686
            ||||  |||||| |||| ||||| ||||||||||| |||||||| |||||
Sbjct: 1304 ttaatgacctttcgcttttctgacatgtctatgtgttcaaacttctggtc 1255
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>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full
            insert sequence
          Length = 3137

 Score =  139 bits (70), Expect = 1e-29
 Identities = 142/166 (85%)
 Strand = Plus / Minus

                                                                        
Query: 512  acctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagcat 571
            ||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| |||||
Sbjct: 2503 acctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagcat 2444

                                                                        
Query: 572  gcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgagc 631
            |||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| |
Sbjct: 2443 gctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaac 2384

                                                          
Query: 632  actcattaacaaccttttgcttctctgatatgtctatgtgatcaaa 677
            ||||||  |  ||||| || || ||||| ||||| |||||||||||
Sbjct: 2383 actcatccaggaccttctgtttttctgacatgtcgatgtgatcaaa 2338
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>gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence
          Length = 2082

 Score =  137 bits (69), Expect = 6e-29
 Identities = 219/269 (81%)
 Strand = Plus / Minus

                                                                        
Query: 457  ggcggggtctgtggttttggcgctggccttggtttggtcatgatgggtttgcagaacctg 516
            ||||| |||||||| || || |||||| ||||||| |||||||| |||||||||||||||
Sbjct: 1642 ggcggagtctgtggcttcggagctggctttggtttagtcatgatcggtttgcagaacctg 1583

                                                                        
Query: 517  tcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagcatgcttc 576
            |||||||||||||| |||||||| |  || || || || || |||||||  |  ||||| 
Sbjct: 1582 tcaagtgcttcagctttcttcttcagatctgatacgagcagcacaggatcggtgtgctta 1523

                                                                        
Query: 577  ggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgagcactca 636
            ||||| || || |||||||||||  ||||  | | |||| ||||| | || |||||||||
Sbjct: 1522 ggtagggcgtcctgctgctgcttcctctctctcaaccagttctctacttcagagcactca 1463

                                                                        
Query: 637  ttaacaaccttttgcttctctgatatgtctatgtgatcaaacttttggtcaccagacaat 696
            || |  ||||| || ||||| |||||||| || ||  |||||||||||||||  ||||| 
Sbjct: 1462 ttgatgaccttctgtttctcagatatgtcgatatggccaaacttttggtcactggacaaa 1403

                                         
Query: 697  gcagcctctctaaaactgcggatgcagta 725
            ||||||||||| ||||||  |||||||||
Sbjct: 1402 gcagcctctctgaaactgttgatgcagta 1374
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>gb|AY108406.1| Zea mays PCO080983 mRNA sequence
          Length = 1289

 Score =  137 bits (69), Expect = 6e-29
 Identities = 219/269 (81%)
 Strand = Plus / Minus

                                                                       
Query: 457 ggcggggtctgtggttttggcgctggccttggtttggtcatgatgggtttgcagaacctg 516
           ||||| |||||||| || || |||||| ||||||| |||||||| |||||||||||||||
Sbjct: 820 ggcggagtctgtggcttcggagctggctttggtttagtcatgatcggtttgcagaacctg 761

                                                                       
Query: 517 tcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagcatgcttc 576
           |||||||||||||| |||||||| |  || || || || || |||||||  |  ||||| 
Sbjct: 760 tcaagtgcttcagctttcttcttcagatctgatacgagcagcacaggatcggtgtgctta 701

                                                                       
Query: 577 ggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgagcactca 636
           ||||| || || |||||||||||  ||||  | | |||| ||||| | || |||||||||
Sbjct: 700 ggtagggcgtcctgctgctgcttcctctctctcaaccagttctctacttcagagcactca 641

                                                                       
Query: 637 ttaacaaccttttgcttctctgatatgtctatgtgatcaaacttttggtcaccagacaat 696
           || |  ||||| || ||||| |||||||| || ||  |||||||||||||||  ||||| 
Sbjct: 640 ttgatgaccttctgtttctcagatatgtcgatatggccaaacttttggtcactggacaaa 581

                                        
Query: 697 gcagcctctctaaaactgcggatgcagta 725
           ||||||||||| ||||||  |||||||||
Sbjct: 580 gcagcctctctgaaactgttgatgcagta 552
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  133 bits (67), Expect = 9e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 511     aacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagca 570
               |||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| ||||
Sbjct: 4825148 aacctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagca 4825089

                                                                           
Query: 571     tgcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgag 630
               ||||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| 
Sbjct: 4825088 tgctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaa 4825029

                      
Query: 631     cactcat 637
               |||||||
Sbjct: 4825028 cactcat 4825022
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score =  133 bits (67), Expect = 9e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                         
Query: 511   aacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagca 570
             |||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| ||||
Sbjct: 97556 aacctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagca 97497

                                                                         
Query: 571   tgcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgag 630
             ||||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| 
Sbjct: 97496 tgctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaa 97437

                    
Query: 631   cactcat 637
             |||||||
Sbjct: 97436 cactcat 97430
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>ref|NM_189556.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3139

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 502  ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 561
            |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 2547 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 2488

                                                        
Query: 562  ggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
            || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 2487 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 2444
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>dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full
            insert sequence
          Length = 3139

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 502  ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 561
            |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 2547 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 2488

                                                        
Query: 562  ggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
            || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 2487 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 2444
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>dbj|AK061691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C02, full
           insert sequence
          Length = 1144

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                       
Query: 502 ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 561
           |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 617 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 558

                                                       
Query: 562 ggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
           || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 557 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 514
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 556     aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
               |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 4257850 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 4257801
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 556   aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
             |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 95817 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 95768
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 556   aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 605
             |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 37620 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 37571
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 527    cagccttcttctttatgtcag 547
              |||||||||||||||||||||
Sbjct: 530338 cagccttcttctttatgtcag 530318
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>gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, complete sequence
          Length = 170072

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccgtagataaaaattacaacg 40
             |||||||||||||||||||||
Sbjct: 86431 ccgtagataaaaattacaacg 86411
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>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence
          Length = 185365

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 653    tctctgatatgtctatgtgat 673
              |||||||||||||||||||||
Sbjct: 178291 tctctgatatgtctatgtgat 178311
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>emb|AL356952.18| Human DNA sequence from clone RP11-809M12 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 129950

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   aaacactgcagaaactctcca 187
             |||||||||||||||||||||
Sbjct: 94033 aaacactgcagaaactctcca 94053
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>emb|AL138997.18| Human DNA sequence from clone RP11-10O23 on chromosome 13 Contains a
              hepatocyte nuclear factor 4 alpha (HNF4A) pseudogene,
              complete sequence
          Length = 172342

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    aaacactgcagaaactctcca 187
              |||||||||||||||||||||
Sbjct: 159807 aaacactgcagaaactctcca 159787
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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 602    tctccattagccaggtctctg 622
              |||||||||||||||||||||
Sbjct: 117076 tctccattagccaggtctctg 117096
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>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence
          Length = 149173

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 532   ttcttctttatgtcagaaaca 552
             |||||||||||||||||||||
Sbjct: 89809 ttcttctttatgtcagaaaca 89829
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>emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17
          Length = 1645

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 211 gtatgaaaacagccattcctt 231
           |||||||||||||||||||||
Sbjct: 495 gtatgaaaacagccattcctt 475
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 286      tctcctcagatcgacacctct 306
                |||||||||||||||||||||
Sbjct: 23968123 tctcctcagatcgacacctct 23968143



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 286     tctcctcagatcgacacctct 306
               |||||||||||||||||||||
Sbjct: 6273780 tctcctcagatcgacacctct 6273760
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>gb|AE009707.1| Brucella melitensis 16M chromosome II, section 69 of 107 of the
            complete sequence
          Length = 9807

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 527  cagccttcttctttatgtcag 547
            |||||||||||||||||||||
Sbjct: 1371 cagccttcttctttatgtcag 1391
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>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1267_F10
          Length = 162669

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   tctcctcagatcgacacctct 306
             |||||||||||||||||||||
Sbjct: 71167 tctcctcagatcgacacctct 71147
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 527    cagccttcttctttatgtcag 547
              |||||||||||||||||||||
Sbjct: 683960 cagccttcttctttatgtcag 683980
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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1476_F05
          Length = 125426

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 286  tctcctcagatcgacacctct 306
            |||||||||||||||||||||
Sbjct: 3161 tctcctcagatcgacacctct 3181
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    tctcctcagatcgacacctct 306
              |||||||||||||||||||||
Sbjct: 102087 tctcctcagatcgacacctct 102107
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 527    cagccttcttctttatgtcag 547
              |||||||||||||||||||||
Sbjct: 683948 cagccttcttctttatgtcag 683968
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>gb|AC069563.28| Mus musculus strain C57BL/6J chromosome 9 clone rp23-477j18, complete
              sequence
          Length = 188584

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 653    tctctgatatgtctatgtgat 673
              |||||||||||||||||||||
Sbjct: 179409 tctctgatatgtctatgtgat 179389
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>gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, complete sequence
          Length = 227440

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    tgctcacccacatgctcatc 362
              ||||||||||||||||||||
Sbjct: 100132 tgctcacccacatgctcatc 100113
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>gb|AC148114.8| Mus musculus chromosome 8, clone RP24-134B6, complete sequence
          Length = 155465

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   ctgctgctttttctccatta 610
             ||||||||||||||||||||
Sbjct: 15201 ctgctgctttttctccatta 15220
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>emb|AL391316.7| Human DNA sequence from clone XX-YM901F10 on chromosome 20 Contains
             ESTs, GSSs and STSs, complete sequence
          Length = 49377

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   ctgctgctttttctccatta 610
             ||||||||||||||||||||
Sbjct: 44986 ctgctgctttttctccatta 45005
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>emb|AL133402.10| Human DNA sequence from clone RP5-1077H22 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 93368

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 694   aatgcagcctctctaaaact 713
             ||||||||||||||||||||
Sbjct: 37549 aatgcagcctctctaaaact 37530
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>gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, complete sequence
          Length = 152130

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 527  cagccttcttctttatgtcagaaacaag 554
            |||||||||||||| ||||||| |||||
Sbjct: 2580 cagccttcttctttgtgtcagatacaag 2553
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>gb|AC026118.17| Homo sapiens 3 BAC RP11-67F24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176108

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 585    atcttgctgctgctttttct 604
              ||||||||||||||||||||
Sbjct: 117420 atcttgctgctgctttttct 117439
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>gb|AC107908.3| Homo sapiens chromosome 15, clone CTD1-2291N1, complete sequence
          Length = 132718

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 527    cagccttcttctttatgtcagaaacaag 554
              |||||||||||||| ||||||| |||||
Sbjct: 112366 cagccttcttctttgtgtcagatacaag 112339
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>gb|AC097489.2| Homo sapiens BAC clone RP11-226A18 from 4, complete sequence
          Length = 152039

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gataaaaattacaacgttat 44
             ||||||||||||||||||||
Sbjct: 81064 gataaaaattacaacgttat 81045
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>gb|AC097712.3| Homo sapiens BAC clone RP11-216H12 from 4, complete sequence
          Length = 184520

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   tttctccattagccaggtct 619
             ||||||||||||||||||||
Sbjct: 96352 tttctccattagccaggtct 96333
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>gb|AC160981.2| Mus musculus BAC clone RP23-363D11 from chromosome 9, complete sequence
          Length = 175606

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   tgctgctttttctccattag 611
             ||||||||||||||||||||
Sbjct: 56055 tgctgctttttctccattag 56074
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>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome
          Length = 212482

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   tttgattgttcttctggtgt 425
             ||||||||||||||||||||
Sbjct: 76801 tttgattgttcttctggtgt 76782
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>dbj|AK016006.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930540C21 product:hypothetical protein,
           full insert sequence
          Length = 1307

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 591 ctgctgctttttctccatta 610
           ||||||||||||||||||||
Sbjct: 728 ctgctgctttttctccatta 709
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>dbj|AK015811.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930517G15 product:hypothetical protein,
           full insert sequence
          Length = 1504

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 591 ctgctgctttttctccatta 610
           ||||||||||||||||||||
Sbjct: 710 ctgctgctttttctccatta 691
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>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete
             sequence
          Length = 181773

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gaaactctccatgttctact 196
             ||||||||||||||||||||
Sbjct: 59334 gaaactctccatgttctact 59315
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>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    tatcggtgtccatttgctca 348
              ||||||||||||||||||||
Sbjct: 144817 tatcggtgtccatttgctca 144836
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>ref|NM_031749.1| Rattus norvegicus glucosidase 1 (Gcs1), mRNA
          Length = 2703

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 467 gtggttttggcgctggcctt 486
           ||||||||||||||||||||
Sbjct: 146 gtggttttggcgctggcctt 165
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>gb|AF087431.1|AF087431 Rattus norvegicus glycoprotein processing glucosidase I mRNA,
           complete cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 467 gtggttttggcgctggcctt 486
           ||||||||||||||||||||
Sbjct: 146 gtggttttggcgctggcctt 165
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>gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, complete sequence
          Length = 211847

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 592  tgctgctttttctccattag 611
            ||||||||||||||||||||
Sbjct: 3990 tgctgctttttctccattag 3971
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>gb|AC124747.3| Mus musculus BAC clone RP23-243O9 from 12, complete sequence
          Length = 208779

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 640   acaaccttttgcttctctga 659
             ||||||||||||||||||||
Sbjct: 93968 acaaccttttgcttctctga 93987
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>ref|NM_029061.1| Mus musculus coiled-coil domain containing 7 (Ccdc7), mRNA
          Length = 1504

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 591 ctgctgctttttctccatta 610
           ||||||||||||||||||||
Sbjct: 710 ctgctgctttttctccatta 691
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>gb|AY854152.1| Mus musculus testis-specific antigen mRNA, complete cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 591 ctgctgctttttctccatta 610
           ||||||||||||||||||||
Sbjct: 760 ctgctgctttttctccatta 741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,998,532
Number of Sequences: 3902068
Number of extensions: 6998532
Number of successful extensions: 118307
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118076
Number of HSP's gapped (non-prelim): 231
length of query: 728
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 705
effective length of database: 17,143,297,704
effective search space: 12086024881320
effective search space used: 12086024881320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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