ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRG_MYCLE (P53529) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 37 0.031
2PYRG_MYCTU (P0A5U2) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 34 0.34
3PYRG_MYCBO (P0A5U3) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 34 0.34
4METX_HALMA (Q5UY71) Homoserine O-acetyltransferase (EC 2.3.1.31)... 29 8.3

>PYRG_MYCLE (P53529) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 590

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -2

Query: 475 HLPRNGEALPETMQYTV--LCSVQVLIHGFLLSYGREVPLSLQDSARAVMVLSMDVCVS* 302
           HL  +GE   +  Q++V  L S+ +     +L   R+VP SL++    +  + +D  +S 
Sbjct: 191 HLAPSGELKTKPTQHSVAALRSIGITPDALILRCDRDVPESLKNKIALMCDVDIDGVIST 250

Query: 301 ADGPALFDINRNLKEETMPLF 239
            D P+++DI + L  E +  F
Sbjct: 251 PDAPSIYDIPKVLHREELDAF 271



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>PYRG_MYCTU (P0A5U2) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -2

Query: 475 HLPRNGEALPETMQYTV--LCSVQVLIHGFLLSYGREVPLSLQDSARAVMVLSMDVCVS* 302
           +L  +GE   +  Q++V  L S+ +     +L   R+VP +L++    +  + +D  +S 
Sbjct: 191 YLAPSGELKTKPTQHSVAALRSIGITPDALILRCDRDVPEALKNKIALMCDVDIDGVIST 250

Query: 301 ADGPALFDINRNLKEETMPLF 239
            D P+++DI + L  E +  F
Sbjct: 251 PDAPSIYDIPKVLHREELDAF 271



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>PYRG_MYCBO (P0A5U3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -2

Query: 475 HLPRNGEALPETMQYTV--LCSVQVLIHGFLLSYGREVPLSLQDSARAVMVLSMDVCVS* 302
           +L  +GE   +  Q++V  L S+ +     +L   R+VP +L++    +  + +D  +S 
Sbjct: 191 YLAPSGELKTKPTQHSVAALRSIGITPDALILRCDRDVPEALKNKIALMCDVDIDGVIST 250

Query: 301 ADGPALFDINRNLKEETMPLF 239
            D P+++DI + L  E +  F
Sbjct: 251 PDAPSIYDIPKVLHREELDAF 271



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>METX_HALMA (Q5UY71) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 402

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 186 ECLGTCFQCRDVSSFFSRQKQEFTENYDCNAH 91
           +  G  F  RDV S+     ++FTE +D N++
Sbjct: 250 DAAGAFFPYRDVESYLDYNAEKFTERFDANSY 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,490,300
Number of Sequences: 219361
Number of extensions: 1707477
Number of successful extensions: 3612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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