ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL6_BOVIN (P26892) Interleukin-6 precursor (IL-6) 30 3.7
2IL6_BUBBU (Q6V919) Interleukin-6 precursor (IL-6) 29 4.8
3HEM2_MACFA (Q60HH9) Delta-aminolevulinic acid dehydratase (EC 4.... 28 8.2
4BISC_RHOSH (P54934) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS... 28 8.2

>IL6_BOVIN (P26892) Interleukin-6 precursor (IL-6)|
          Length = 208

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +3

Query: 9   KDSXTKSSTNRSSEFQVTTTTITSIDKLILSFLQDVYTS*SRSLRYQRKH--TKINTMWK 182
           KD   +S  N++     TT  +    ++ L +LQ+ Y     ++R  RK+  T I  + +
Sbjct: 98  KDGCFQSGFNQAICLIRTTAGLLEY-QIYLDYLQNEYEGNQENVRDLRKNIRTLIQILKQ 156

Query: 183 EMADILHTDPANTDL 227
           ++AD++ T   NTDL
Sbjct: 157 KIADLITTPATNTDL 171



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>IL6_BUBBU (Q6V919) Interleukin-6 precursor (IL-6)|
          Length = 208

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +3

Query: 9   KDSXTKSSTNRSSEFQVTTTTITSIDKLILSFLQDVYTS*SRSLRYQRKH--TKINTMWK 182
           KD   +S  N++     TT  +    ++ L +LQ+ Y     ++R  RK+  T I  + +
Sbjct: 98  KDGCFQSGFNQAICLIRTTAGLLEY-QIYLDYLQNEYEGNRENVRDLRKNIRTLIQILKQ 156

Query: 183 EMADILHTDPANTDL 227
           ++AD++ T   NTDL
Sbjct: 157 KIADLITTPATNTDL 171



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>HEM2_MACFA (Q60HH9) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)|
           (Porphobilinogen synthase) (ALADH)
          Length = 330

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 239 RRIFEVGVRGVRVEDICHLLPHGVDLGMLPLIPKTPTLAGIYVLKKTQDQFVDRCDCCCC 60
           R + E G+R V +  I   +P   + G      ++P +  I++L+KT    +  CD C C
Sbjct: 66  RPLVEEGLRCVLIFGIPSRVPKD-ERGSAADSEESPAIEAIHLLRKTFPNLLVACDICLC 124



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>BISC_RHOSH (P54934) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS reductase)|
           (BSO reductase)
          Length = 744

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 239 RRIFEVGVRGVRVEDICHLLPHGVDLGMLPLIPKTPT-----LAGIYVLKKTQD-QFVDR 78
           RRI E GVR + V  +   LP  V     P+ P T T     LAG  V    QD  F+ R
Sbjct: 184 RRIVERGVRVILVSPLKDDLPDWVAAEWWPIRPNTDTALMLGLAGEIVRSGRQDSDFLAR 243

Query: 77  C 75
           C
Sbjct: 244 C 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,074,480
Number of Sequences: 219361
Number of extensions: 1212338
Number of successful extensions: 3616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3608
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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