| Clone Name | rbags30e04 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | IL6_BOVIN (P26892) Interleukin-6 precursor (IL-6) | 30 | 3.7 | 2 | IL6_BUBBU (Q6V919) Interleukin-6 precursor (IL-6) | 29 | 4.8 | 3 | HEM2_MACFA (Q60HH9) Delta-aminolevulinic acid dehydratase (EC 4.... | 28 | 8.2 | 4 | BISC_RHOSH (P54934) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS... | 28 | 8.2 |
|---|
>IL6_BOVIN (P26892) Interleukin-6 precursor (IL-6)| Length = 208 Score = 29.6 bits (65), Expect = 3.7 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +3 Query: 9 KDSXTKSSTNRSSEFQVTTTTITSIDKLILSFLQDVYTS*SRSLRYQRKH--TKINTMWK 182 KD +S N++ TT + ++ L +LQ+ Y ++R RK+ T I + + Sbjct: 98 KDGCFQSGFNQAICLIRTTAGLLEY-QIYLDYLQNEYEGNQENVRDLRKNIRTLIQILKQ 156 Query: 183 EMADILHTDPANTDL 227 ++AD++ T NTDL Sbjct: 157 KIADLITTPATNTDL 171
>IL6_BUBBU (Q6V919) Interleukin-6 precursor (IL-6)| Length = 208 Score = 29.3 bits (64), Expect = 4.8 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +3 Query: 9 KDSXTKSSTNRSSEFQVTTTTITSIDKLILSFLQDVYTS*SRSLRYQRKH--TKINTMWK 182 KD +S N++ TT + ++ L +LQ+ Y ++R RK+ T I + + Sbjct: 98 KDGCFQSGFNQAICLIRTTAGLLEY-QIYLDYLQNEYEGNRENVRDLRKNIRTLIQILKQ 156 Query: 183 EMADILHTDPANTDL 227 ++AD++ T NTDL Sbjct: 157 KIADLITTPATNTDL 171
>HEM2_MACFA (Q60HH9) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -3 Query: 239 RRIFEVGVRGVRVEDICHLLPHGVDLGMLPLIPKTPTLAGIYVLKKTQDQFVDRCDCCCC 60 R + E G+R V + I +P + G ++P + I++L+KT + CD C C Sbjct: 66 RPLVEEGLRCVLIFGIPSRVPKD-ERGSAADSEESPAIEAIHLLRKTFPNLLVACDICLC 124
>BISC_RHOSH (P54934) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS reductase)| (BSO reductase) Length = 744 Score = 28.5 bits (62), Expect = 8.2 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = -3 Query: 239 RRIFEVGVRGVRVEDICHLLPHGVDLGMLPLIPKTPT-----LAGIYVLKKTQD-QFVDR 78 RRI E GVR + V + LP V P+ P T T LAG V QD F+ R Sbjct: 184 RRIVERGVRVILVSPLKDDLPDWVAAEWWPIRPNTDTALMLGLAGEIVRSGRQDSDFLAR 243 Query: 77 C 75 C Sbjct: 244 C 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,074,480 Number of Sequences: 219361 Number of extensions: 1212338 Number of successful extensions: 3616 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3608 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)