ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MIH_JASLA (P83220) Probable molt-inhibiting hormone (MIH) 30 1.7
2SMYD3_MOUSE (Q9CWR2) SET and MYND domain-containing protein 3 (E... 29 4.9
3NOSZ_BRAJA (Q89XJ6) Nitrous-oxide reductase precursor (EC 1.7.99... 28 8.3

>MIH_JASLA (P83220) Probable molt-inhibiting hormone (MIH)|
          Length = 74

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 144 YIYRELELACMPCMHIYLELRVVMEVIEGCF 52
           Y+Y ++E  C  C ++Y E ++ +   E CF
Sbjct: 14  YLYEQVEQVCDDCYNLYREEKIAVNCRENCF 44



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>SMYD3_MOUSE (Q9CWR2) SET and MYND domain-containing protein 3 (EC 2.1.1.43)|
           (Zinc finger MYND domain-containing protein 1)
          Length = 428

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 369 RRGWESTRESCSILQSGCAPRGPSAMKNLGGNICLALANDRVYEDD 232
           ++ W   R  CS L+S C PR P     L G + + L +++  E +
Sbjct: 77  KKAWPDHRRECSCLKS-CKPRYPPDSVRLLGRVIVKLMDEKPSESE 121



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>NOSZ_BRAJA (Q89XJ6) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)|
           (N2O reductase)
          Length = 650

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 363 GWESTRESCSILQSGCAPRGPSAMKNLGG 277
           GW  T ES  +L  G  P     +KN GG
Sbjct: 111 GWGQTNESLKVLTEGMQPATREFLKNRGG 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,422,988
Number of Sequences: 219361
Number of extensions: 1092836
Number of successful extensions: 2521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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