ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BYR4_SCHPO (Q10951) Protein byr4 30 6.1
2Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (... 30 8.0

>BYR4_SCHPO (Q10951) Protein byr4|
          Length = 665

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 379 GAFENIVSGPEYAELREGGPKKLNIQFFKDIQARMRDPNFNFS 251
           G+  +I++ P+ +E+ + GP+    QF +DIQ R R   + FS
Sbjct: 603 GSINSIINFPDMSEIYDVGPEFEKKQFSEDIQWRKRIDGWFFS 645



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>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)|
          Length = 407

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 493 GKQARKLAVENALKKLKKGPDGRYINVFDVVTDIDILIGAFENIVSGPEYAELREGGPKK 314
           G  + + A+E A K  K     +   VFDV TD ++ +  F+ ++  P    L     KK
Sbjct: 298 GFDSNEFAIEMARKNAKIN---KVDAVFDVATDREVEVNGFDTVIVDPPRVGLHPKLIKK 354

Query: 313 LN 308
           LN
Sbjct: 355 LN 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,490,019
Number of Sequences: 219361
Number of extensions: 1387681
Number of successful extensions: 3399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3398
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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