No.
Definition
Score (bits)
E Value
1 dbj|AK103466.1| Oryza sativa (japonica cultivar-group) cDNA clon...
194
3e-46
2 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
157
6e-35
3 gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome...
157
6e-35
4 gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome...
157
6e-35
5 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
157
6e-35
6 gb|AC007166.7| Arabidopsis thaliana chromosome 2 clone F14P14 ma...
42
2.3
7 emb|AL714023.12| Mouse DNA sequence from clone RP23-12H6 on chro...
42
2.3
8 gb|AE017263.1| Mesoplasma florum L1 complete genome
40
9.0
9 gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chrom...
40
9.0
10 emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chro...
40
9.0
11 gb|AC157769.3| Mus musculus chromosome 1, clone RP24-314L7, comp...
40
9.0
12 gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone ...
40
9.0
13 emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g...
40
9.0
14 dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, co...
40
9.0
15 dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co...
40
9.0
16 gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete...
40
9.0
17 emb|BX511142.3| Zebrafish DNA sequence from clone CH211-69B22 in...
40
9.0
18 gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co...
40
9.0
19 gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl...
40
9.0
20 gb|AC025950.9| Staphylococcus aureus clone sabac-130, complete s...
40
9.0
21 gb|AC025948.16| Staphylococcus aureus clone sabac-101, complete ...
40
9.0
22 dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com...
40
9.0
23 dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic...
40
9.0
24 emb|CT025895.11| Zebrafish DNA sequence from clone DKEY-273E13 i...
40
9.0
25 emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2...
40
9.0
26 emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
40
9.0
27 emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co...
40
9.0
>gb|AC105730.2 | Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0011L14, complete sequence
Length = 117974
Score = 157 bits (79), Expect = 6e-35
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 286 cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 69861 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 69920
Query: 346 ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
||| | ||||||||| || |||||||||||||| | | ||||||||||||| | |||
Sbjct: 69921 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 69980
Query: 406 ccatcttacacgcctccgtattttgtcaccctgta 440
||||||| ||||| |||| | ||||||||||||||
Sbjct: 69981 ccatctttcacgcttccgcaatttgtcaccctgta 70015
Score = 117 bits (59), Expect = 5e-23
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 130 tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||
Sbjct: 69687 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 69746
Query: 190 gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
|| ||||||| || |||| |||| ||||| ||||| |||| |||||||||||||||
Sbjct: 69747 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 69806
Query: 250 tgatctagtaaggagagcttcac 272
||| |||||||||||||||||||
Sbjct: 69807 tgacctagtaaggagagcttcac 69829
Score = 91.7 bits (46), Expect = 3e-15
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 542 ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
||||| || ||||||| || |||||||||||||| |||||||||||||| | |||||||
Sbjct: 73214 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 73273
Query: 602 aatatgtccttgcacaaattttcatc 627
|||||||| ||||||||||| |||||
Sbjct: 73274 aatatgtctttgcacaaattgtcatc 73299
Score = 50.1 bits (25), Expect = 0.009
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 435 cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
|||||||||| ||||| ||||| |||| ||||| ||||||||||||||
Sbjct: 71748 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 71796
Score = 46.1 bits (23), Expect = 0.15
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 gtgccgtaaccagtgaaaactcggcat 115
||||||||||||| |||||||||||||
Sbjct: 69632 gtgccgtaaccagagaaaactcggcat 69658
>gb|AC134233.3 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
complete sequence
Length = 166282
Score = 157 bits (79), Expect = 6e-35
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 286 cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 163891 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 163832
Query: 346 ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
||| | ||||||||| || |||||||||||||| | | ||||||||||||| | |||
Sbjct: 163831 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 163772
Query: 406 ccatcttacacgcctccgtattttgtcaccctgta 440
||||||| ||||| |||| | ||||||||||||||
Sbjct: 163771 ccatctttcacgcttccgcaatttgtcaccctgta 163737
Score = 117 bits (59), Expect = 5e-23
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 130 tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||
Sbjct: 164065 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 164006
Query: 190 gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
|| ||||||| || |||| |||| ||||| ||||| |||| |||||||||||||||
Sbjct: 164005 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 163946
Query: 250 tgatctagtaaggagagcttcac 272
||| |||||||||||||||||||
Sbjct: 163945 tgacctagtaaggagagcttcac 163923
Score = 91.7 bits (46), Expect = 3e-15
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 542 ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
||||| || ||||||| || |||||||||||||| |||||||||||||| | |||||||
Sbjct: 160538 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 160479
Query: 602 aatatgtccttgcacaaattttcatc 627
|||||||| ||||||||||| |||||
Sbjct: 160478 aatatgtctttgcacaaattgtcatc 160453
Score = 50.1 bits (25), Expect = 0.009
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 435 cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
|||||||||| ||||| ||||| |||| ||||| ||||||||||||||
Sbjct: 162004 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 161956
Score = 46.1 bits (23), Expect = 0.15
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 89 gtgccgtaaccagtgaaaactcggcat 115
||||||||||||| |||||||||||||
Sbjct: 164120 gtgccgtaaccagagaaaactcggcat 164094
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 157 bits (79), Expect = 6e-35
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 286 cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 3026515 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 3026456
Query: 346 ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
||| | ||||||||| || |||||||||||||| | | ||||||||||||| | |||
Sbjct: 3026455 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 3026396
Query: 406 ccatcttacacgcctccgtattttgtcaccctgta 440
||||||| ||||| |||| | ||||||||||||||
Sbjct: 3026395 ccatctttcacgcttccgcaatttgtcaccctgta 3026361
Score = 117 bits (59), Expect = 5e-23
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 130 tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||
Sbjct: 3026689 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 3026630
Query: 190 gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
|| ||||||| || |||| |||| ||||| ||||| |||| |||||||||||||||
Sbjct: 3026629 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 3026570
Query: 250 tgatctagtaaggagagcttcac 272
||| |||||||||||||||||||
Sbjct: 3026569 tgacctagtaaggagagcttcac 3026547
Score = 91.7 bits (46), Expect = 3e-15
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 542 ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
||||| || ||||||| || |||||||||||||| |||||||||||||| | |||||||
Sbjct: 3023162 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 3023103
Query: 602 aatatgtccttgcacaaattttcatc 627
|||||||| ||||||||||| |||||
Sbjct: 3023102 aatatgtctttgcacaaattgtcatc 3023077
Score = 50.1 bits (25), Expect = 0.009
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 435 cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
|||||||||| ||||| ||||| |||| ||||| ||||||||||||||
Sbjct: 3024628 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 3024580
Score = 46.1 bits (23), Expect = 0.15
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 89 gtgccgtaaccagtgaaaactcggcat 115
||||||||||||| |||||||||||||
Sbjct: 3026744 gtgccgtaaccagagaaaactcggcat 3026718
>emb|AJ851868.2 | Mus musculus immunoglobulin heavy chain locus constant region and partial
variable region, strain 129/Sv
Length = 1382053
Score = 40.1 bits (20), Expect = 9.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 559 ggacaatggcacccaaccatggtcatcc 586
||||||||||| ||| ||||||||||||
Sbjct: 1096803 ggacaatggcagccagccatggtcatcc 1096830
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,895,428
Number of Sequences: 3902068
Number of extensions: 4895428
Number of successful extensions: 81340
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81093
Number of HSP's gapped (non-prelim): 242
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)