ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 3e-46
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 6e-35
3gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
4gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6gb|AC007166.7| Arabidopsis thaliana chromosome 2 clone F14P14 ma... 42 2.3
7emb|AL714023.12| Mouse DNA sequence from clone RP23-12H6 on chro... 42 2.3
8gb|AE017263.1| Mesoplasma florum L1 complete genome 40 9.0
9gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chrom... 40 9.0
10emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chro... 40 9.0
11gb|AC157769.3| Mus musculus chromosome 1, clone RP24-314L7, comp... 40 9.0
12gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 9.0
13emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 9.0
14dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, co... 40 9.0
15dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 9.0
16gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 9.0
17emb|BX511142.3| Zebrafish DNA sequence from clone CH211-69B22 in... 40 9.0
18gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 9.0
19gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 9.0
20gb|AC025950.9| Staphylococcus aureus clone sabac-130, complete s... 40 9.0
21gb|AC025948.16| Staphylococcus aureus clone sabac-101, complete ... 40 9.0
22dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 9.0
23dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 9.0
24emb|CT025895.11| Zebrafish DNA sequence from clone DKEY-273E13 i... 40 9.0
25emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 9.0
26emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 9.0
27emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co... 40 9.0

>dbj|AK103466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129N23, full
            insert sequence
          Length = 2175

 Score =  194 bits (98), Expect = 3e-46
 Identities = 173/198 (87%)
 Strand = Plus / Minus

                                                                        
Query: 286  cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
            |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 1571 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 1512

                                                                        
Query: 346  ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
            |||  | ||||||||| || ||||||||||||||  |  | ||||||||||||| | |||
Sbjct: 1511 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 1452

                                                                        
Query: 406  ccatcttacacgcctccgtattttgtcaccctgtacttccaccacagtagactgcatgac 465
            ||||||| ||||| |||| | |||||||||||||||||| ||||| ||||| ||||  ||
Sbjct: 1451 ccatctttcacgcttccgcaatttgtcaccctgtacttcaaccacggtagattgcagaac 1392

                              
Query: 466  tgtatccaagataaactg 483
            ||| ||||||||||||||
Sbjct: 1391 tgtttccaagataaactg 1374



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                        
Query: 542  ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
            ||||| || ||||||| ||  |||||||||||||| |||||||||||||| | |||||||
Sbjct: 1345 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 1286

                                                            
Query: 602  aatatgtccttgcacaaattttcatcgctaaagtagtagtctatctgc 649
            |||||||| ||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 1285 aatatgtctttgcacaaattgtcatcactaaagtagtactctatctgc 1238



 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                        
Query: 130  tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
            ||||||||||||||||| ||||||||||||  | | || |||||||||||  ||||||||
Sbjct: 1745 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 1686

                                                                        
Query: 190  gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
             || ||||||| ||  ||||  ||||  ||||| ||||| |||| |||||||||||||||
Sbjct: 1685 cccgttgctgtataaccctccaaaggggggtgcctgataacctagactaactgaagttgc 1626

                                   
Query: 250  tgatctagtaaggagagcttcac 272
            ||| |||||||||||||||||||
Sbjct: 1625 tgacctagtaaggagagcttcac 1603



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 89   gtgccgtaaccagtgaaaactcggcat 115
            ||||||||||||| |||||||||||||
Sbjct: 1800 gtgccgtaaccagagaaaactcggcat 1774



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 6e-35
 Identities = 136/155 (87%)
 Strand = Plus / Minus

                                                                           
Query: 286     cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
               |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 3026400 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 3026341

                                                                           
Query: 346     ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
               |||  | ||||||||| || ||||||||||||||  |  | ||||||||||||| | |||
Sbjct: 3026340 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 3026281

                                                  
Query: 406     ccatcttacacgcctccgtattttgtcaccctgta 440
               ||||||| ||||| |||| | ||||||||||||||
Sbjct: 3026280 ccatctttcacgcttccgcaatttgtcaccctgta 3026246



 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                           
Query: 130     tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
               ||||||||||||||||| ||||||||||||  | | || |||||||||||  ||||||||
Sbjct: 3026574 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 3026515

                                                                           
Query: 190     gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
                || ||||||| ||  ||||  ||||  ||||| ||||| |||| |||||||||||||||
Sbjct: 3026514 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 3026455

                                      
Query: 250     tgatctagtaaggagagcttcac 272
               ||| |||||||||||||||||||
Sbjct: 3026454 tgacctagtaaggagagcttcac 3026432



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                           
Query: 542     ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
               ||||| || ||||||| ||  |||||||||||||| |||||||||||||| | |||||||
Sbjct: 3023047 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 3022988

                                         
Query: 602     aatatgtccttgcacaaattttcatc 627
               |||||||| ||||||||||| |||||
Sbjct: 3022987 aatatgtctttgcacaaattgtcatc 3022962



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                
Query: 435     cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
               |||||||||| ||||| ||||| ||||  ||||| ||||||||||||||
Sbjct: 3024513 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 3024465



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 89      gtgccgtaaccagtgaaaactcggcat 115
               ||||||||||||| |||||||||||||
Sbjct: 3026629 gtgccgtaaccagagaaaactcggcat 3026603



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>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0011L14, complete sequence
          Length = 117974

 Score =  157 bits (79), Expect = 6e-35
 Identities = 136/155 (87%)
 Strand = Plus / Plus

                                                                         
Query: 286   cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
             |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 69861 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 69920

                                                                         
Query: 346   ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
             |||  | ||||||||| || ||||||||||||||  |  | ||||||||||||| | |||
Sbjct: 69921 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 69980

                                                
Query: 406   ccatcttacacgcctccgtattttgtcaccctgta 440
             ||||||| ||||| |||| | ||||||||||||||
Sbjct: 69981 ccatctttcacgcttccgcaatttgtcaccctgta 70015



 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                         
Query: 130   tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
             ||||||||||||||||| ||||||||||||  | | || |||||||||||  ||||||||
Sbjct: 69687 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 69746

                                                                         
Query: 190   gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
              || ||||||| ||  ||||  ||||  ||||| ||||| |||| |||||||||||||||
Sbjct: 69747 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 69806

                                    
Query: 250   tgatctagtaaggagagcttcac 272
             ||| |||||||||||||||||||
Sbjct: 69807 tgacctagtaaggagagcttcac 69829



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                         
Query: 542   ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
             ||||| || ||||||| ||  |||||||||||||| |||||||||||||| | |||||||
Sbjct: 73214 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 73273

                                       
Query: 602   aatatgtccttgcacaaattttcatc 627
             |||||||| ||||||||||| |||||
Sbjct: 73274 aatatgtctttgcacaaattgtcatc 73299



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 435   cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
             |||||||||| ||||| ||||| ||||  ||||| ||||||||||||||
Sbjct: 71748 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 71796



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 89    gtgccgtaaccagtgaaaactcggcat 115
             ||||||||||||| |||||||||||||
Sbjct: 69632 gtgccgtaaccagagaaaactcggcat 69658



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score =  157 bits (79), Expect = 6e-35
 Identities = 136/155 (87%)
 Strand = Plus / Minus

                                                                          
Query: 286    cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
              |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 163891 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 163832

                                                                          
Query: 346    ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
              |||  | ||||||||| || ||||||||||||||  |  | ||||||||||||| | |||
Sbjct: 163831 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 163772

                                                 
Query: 406    ccatcttacacgcctccgtattttgtcaccctgta 440
              ||||||| ||||| |||| | ||||||||||||||
Sbjct: 163771 ccatctttcacgcttccgcaatttgtcaccctgta 163737



 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                          
Query: 130    tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
              ||||||||||||||||| ||||||||||||  | | || |||||||||||  ||||||||
Sbjct: 164065 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 164006

                                                                          
Query: 190    gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
               || ||||||| ||  ||||  ||||  ||||| ||||| |||| |||||||||||||||
Sbjct: 164005 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 163946

                                     
Query: 250    tgatctagtaaggagagcttcac 272
              ||| |||||||||||||||||||
Sbjct: 163945 tgacctagtaaggagagcttcac 163923



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                          
Query: 542    ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
              ||||| || ||||||| ||  |||||||||||||| |||||||||||||| | |||||||
Sbjct: 160538 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 160479

                                        
Query: 602    aatatgtccttgcacaaattttcatc 627
              |||||||| ||||||||||| |||||
Sbjct: 160478 aatatgtctttgcacaaattgtcatc 160453



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 435    cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
              |||||||||| ||||| ||||| ||||  ||||| ||||||||||||||
Sbjct: 162004 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 161956



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 89     gtgccgtaaccagtgaaaactcggcat 115
              ||||||||||||| |||||||||||||
Sbjct: 164120 gtgccgtaaccagagaaaactcggcat 164094



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 6e-35
 Identities = 136/155 (87%)
 Strand = Plus / Minus

                                                                           
Query: 286     cccctcaagtccaacagattgaaactgagacgccaatgaatcaatgttggatgtcacggg 345
               |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 3026515 cccctcaagtccaacagattgaaactgagatgccagtgaatcaatgttggatgtcacagg 3026456

                                                                           
Query: 346     ggaacgtgaaccagaaaaaattccagcagaataatttgatcttggaagcaaccaaacctc 405
               |||  | ||||||||| || ||||||||||||||  |  | ||||||||||||| | |||
Sbjct: 3026455 ggacagcgaaccagaagaatttccagcagaataaccttgttttggaagcaaccagatctc 3026396

                                                  
Query: 406     ccatcttacacgcctccgtattttgtcaccctgta 440
               ||||||| ||||| |||| | ||||||||||||||
Sbjct: 3026395 ccatctttcacgcttccgcaatttgtcaccctgta 3026361



 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                           
Query: 130     tcaaaaggtatcgctcctgagtaaacttctctcggtctgctgcccaaaaatgggtccact 189
               ||||||||||||||||| ||||||||||||  | | || |||||||||||  ||||||||
Sbjct: 3026689 tcaaaaggtatcgctccggagtaaacttcttgcagacttctgcccaaaaagtggtccact 3026630

                                                                           
Query: 190     gccattgctgtgtagtcctctgaaggtaggtgcttgatagcctatactaactgaagttgc 249
                || ||||||| ||  ||||  ||||  ||||| ||||| |||| |||||||||||||||
Sbjct: 3026629 cccgttgctgtataaccctcccaaggggggtgcctgataacctagactaactgaagttgc 3026570

                                      
Query: 250     tgatctagtaaggagagcttcac 272
               ||| |||||||||||||||||||
Sbjct: 3026569 tgacctagtaaggagagcttcac 3026547



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                           
Query: 542     ttaaagccagcaatcaaggacaatggcacccaaccatggtcatccatatgtcccctcaag 601
               ||||| || ||||||| ||  |||||||||||||| |||||||||||||| | |||||||
Sbjct: 3023162 ttaaatcctgcaatcaggggtaatggcacccaaccctggtcatccatatgccgcctcaag 3023103

                                         
Query: 602     aatatgtccttgcacaaattttcatc 627
               |||||||| ||||||||||| |||||
Sbjct: 3023102 aatatgtctttgcacaaattgtcatc 3023077



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                
Query: 435     cctgtacttccaccacagtagactgcatgactgtatccaagataaactg 483
               |||||||||| ||||| ||||| ||||  ||||| ||||||||||||||
Sbjct: 3024628 cctgtacttcaaccacggtagattgcagaactgtttccaagataaactg 3024580



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 89      gtgccgtaaccagtgaaaactcggcat 115
               ||||||||||||| |||||||||||||
Sbjct: 3026744 gtgccgtaaccagagaaaactcggcat 3026718



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>gb|AC007166.7| Arabidopsis thaliana chromosome 2 clone F14P14 map mi421, complete
             sequence
          Length = 92569

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 598   caagaatatgtccttgcacaa 618
             |||||||||||||||||||||
Sbjct: 46913 caagaatatgtccttgcacaa 46893



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>emb|AL714023.12| Mouse DNA sequence from clone RP23-12H6 on chromosome 2, complete
             sequence
          Length = 211570

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 526   gagcctttggaccttgttaaagcca 550
             |||||||||||||||||| ||||||
Sbjct: 24624 gagcctttggaccttgttcaagcca 24648



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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   tggtcaagtttttgacttgc 511
             ||||||||||||||||||||
Sbjct: 71013 tggtcaagtttttgacttgc 71032



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>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete
              sequence
          Length = 166748

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    acgccaatgaatcaatgttg 334
              ||||||||||||||||||||
Sbjct: 119476 acgccaatgaatcaatgttg 119457



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>emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chromosome 13, complete
             sequence
          Length = 85563

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   aattccagcagaataatttg 383
             ||||||||||||||||||||
Sbjct: 44285 aattccagcagaataatttg 44266



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>gb|AC157769.3| Mus musculus chromosome 1, clone RP24-314L7, complete sequence
          Length = 131045

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 628    gctaaagtagtagtctatct 647
              ||||||||||||||||||||
Sbjct: 111547 gctaaagtagtagtctatct 111528



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>gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-270B12, complete
             sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 559   ggacaatggcacccaaccatggtcatcc 586
             ||||||||||| ||| ||||||||||||
Sbjct: 38295 ggacaatggcagccagccatggtcatcc 38322



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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2769468 tgagacgccaatgaatcaat 2769449



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>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence
          Length = 101965

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 285  tcccctcaagtccaacagattgaa 308
            |||| |||||||||||||||||||
Sbjct: 6455 tcccgtcaagtccaacagattgaa 6478



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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2850954 tgagacgccaatgaatcaat 2850935



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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2780119 tgagacgccaatgaatcaat 2780100



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>emb|BX511142.3| Zebrafish DNA sequence from clone CH211-69B22 in linkage group 14,
             complete sequence
          Length = 168322

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   agcaatcaaggacaatggca 569
             ||||||||||||||||||||
Sbjct: 84538 agcaatcaaggacaatggca 84557



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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2792031 tgagacgccaatgaatcaat 2792012



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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2843467 tgagacgccaatgaatcaat 2843448



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>gb|AC025950.9| Staphylococcus aureus clone sabac-130, complete sequence
          Length = 49336

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   tgagacgccaatgaatcaat 330
             ||||||||||||||||||||
Sbjct: 37363 tgagacgccaatgaatcaat 37382



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>gb|AC025948.16| Staphylococcus aureus clone sabac-101, complete sequence
          Length = 50152

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tgagacgccaatgaatcaat 330
             ||||||||||||||||||||
Sbjct: 12790 tgagacgccaatgaatcaat 12771



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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2790128 tgagacgccaatgaatcaat 2790109



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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2787240 tgagacgccaatgaatcaat 2787221



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>emb|CT025895.11| Zebrafish DNA sequence from clone DKEY-273E13 in linkage group 13,
             complete sequence
          Length = 56618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tctttgttgtgtatcaaaag 136
             ||||||||||||||||||||
Sbjct: 46996 tctttgttgtgtatcaaaag 47015



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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2868872 tgagacgccaatgaatcaat 2868853



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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgagacgccaatgaatcaat 330
               ||||||||||||||||||||
Sbjct: 2714497 tgagacgccaatgaatcaat 2714478



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>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
               variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 559     ggacaatggcacccaaccatggtcatcc 586
               ||||||||||| ||| ||||||||||||
Sbjct: 1096803 ggacaatggcagccagccatggtcatcc 1096830


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,895,428
Number of Sequences: 3902068
Number of extensions: 4895428
Number of successful extensions: 81340
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81093
Number of HSP's gapped (non-prelim): 242
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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