ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30d14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 156 5e-38
2UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 80 4e-15
3UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 79 1e-14
4UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 77 5e-14
5UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 77 5e-14
6UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP... 75 1e-13
7UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 75 1e-13
8UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UD... 59 1e-08
9UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UD... 56 7e-08
10UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UD... 55 1e-07
11UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UD... 55 2e-07
12Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [C... 53 6e-07
13TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (U... 50 4e-06
14NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-... 35 0.17
15ILVD_HALMA (Q5V545) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 34 0.38
16RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase 33 0.84
17SYD_XANOR (Q5H2B1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 32 1.4
18SYD_XANOM (Q2P582) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 32 1.4
19SYD_XANC5 (Q3BQE6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 31 2.4
20SYD_XANAC (Q8PHU5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 31 2.4
21RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3) 31 2.4
22BIGA_SALTY (P25927) Putative surface-exposed virulence protein b... 30 4.2
23RPOB1_HALSA (P15351) DNA-directed RNA polymerase subunit B' (EC ... 30 4.2
24HIS7_PYRAE (Q8ZY15) Imidazoleglycerol-phosphate dehydratase (EC ... 30 5.4
25PBX4_HUMAN (Q9BYU1) Pre-B-cell leukemia transcription factor 4 (... 30 7.1
26ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related home... 30 7.1
27DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (P... 30 7.1
28Y4747_STRCO (O86788) Hypothetical UPF0079 protein SCO4747 29 9.3

>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score =  156 bits (394), Expect = 5e-38
 Identities = 72/81 (88%), Positives = 78/81 (96%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428
           VSVVWDAYEATK AH +CILTEW+EFK+LDY+KIFDNMQKPAFVFDGRN+VDA+KLREIG
Sbjct: 400 VSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIG 459

Query: 427 FIVYSIGKPLDGWLKDMPAVA 365
           FIVYSIGKPLD WLKDMPAVA
Sbjct: 460 FIVYSIGKPLDPWLKDMPAVA 480



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>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless)
          Length = 476

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 34/68 (50%), Positives = 50/68 (73%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428
           V +  D Y A +  HA+ I TEW+EF  LD+K+I+ +M KPA++FDGR ++D E+L++IG
Sbjct: 392 VQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIG 451

Query: 427 FIVYSIGK 404
           F V +IGK
Sbjct: 452 FHVQTIGK 459



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>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva
           protein 4)
          Length = 481

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 35/71 (49%), Positives = 51/71 (71%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428
           ++V  D Y A +GAHA+ +LTEW+EF  L+Y +I ++MQ PA +FDGR ++D + LREIG
Sbjct: 400 ITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIG 459

Query: 427 FIVYSIGKPLD 395
           F  ++IG   D
Sbjct: 460 FRTFAIGTSPD 470



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>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434
           V++  D YEA  GAHAV I TEW+ FK LDY++I   M KPAF+FDGR V+D    +L+ 
Sbjct: 395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQT 454

Query: 433 IGFIVYSIGK 404
           IGF + +IGK
Sbjct: 455 IGFQIETIGK 464



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>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434
           V++  D YEA  GAHAV I TEW+ FK LDY++I   M KPAF+FDGR V+D    +L+ 
Sbjct: 395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQT 454

Query: 433 IGFIVYSIGK 404
           IGF + +IGK
Sbjct: 455 IGFQIETIGK 464



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>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434
           V++  D YEA  GAHA+ I TEW+ FK LDY++I   M KPAF+FDGR V+D    +L+ 
Sbjct: 395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQT 454

Query: 433 IGFIVYSIGK 404
           IGF + +IGK
Sbjct: 455 IGFQIETIGK 464



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>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -1

Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434
           V++  D YEA  GAHA+ I TEW+ FK LDY++I   M KPAF+FDGR V+D    +L+ 
Sbjct: 395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQT 454

Query: 433 IGFIVYSIGK 404
           IGF + +IGK
Sbjct: 455 IGFQIETIGK 464



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>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 453

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 28/68 (41%), Positives = 43/68 (63%)
 Frame = -1

Query: 586 YEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIG 407
           Y A +GA A+ ++TEW +F+  D++KI  +M+ P  V DGRN+    ++ E+GFI   IG
Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441

Query: 406 KPLDGWLK 383
           +P  G  K
Sbjct: 442 RPRAGHCK 449



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>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 432

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 24/64 (37%), Positives = 43/64 (67%)
 Frame = -1

Query: 589 AYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSI 410
           A +A K    + I TEW+EFK L++++I+D ++ P  + D RN++D E +++IGF  Y++
Sbjct: 370 AVDACKSVDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAV 428

Query: 409 GKPL 398
           G  +
Sbjct: 429 GSKI 432



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>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 434

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = -1

Query: 589 AYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSI 410
           A EA K    + I TEW+EFK L++++I+ N+ K   + D RN++D E +++IGF  Y++
Sbjct: 372 AVEACKSVDIIVIATEWSEFKELNWQEIY-NLVKSPMIIDLRNILDNEVMKKIGFRYYAV 430

Query: 409 GKPL 398
           G  +
Sbjct: 431 GSQI 434



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>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 437

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/64 (42%), Positives = 41/64 (64%)
 Frame = -1

Query: 592 DAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYS 413
           D YEA   A A+ I+TEWNEF++LD+ ++   M+ P  V D RN+   +++ + GF   S
Sbjct: 374 DPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYAS 432

Query: 412 IGKP 401
           IG+P
Sbjct: 433 IGRP 436



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>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja|
            UDPGD intein]
          Length = 895

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 26/66 (39%), Positives = 41/66 (62%)
 Frame = -1

Query: 601  VVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFI 422
            V+ D YE  K    + I  E+ +F   D++KI  N+ K   VFDGRN++D EK++++GF 
Sbjct: 832  VLDDLYETVKNVDGIIITVEY-DFNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFK 889

Query: 421  VYSIGK 404
             Y +G+
Sbjct: 890  YYGVGR 895



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>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid
           biosynthesis protein tuaD)
          Length = 461

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 23/64 (35%), Positives = 39/64 (60%)
 Frame = -1

Query: 592 DAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYS 413
           D Y A +   A  ILT+W E K ++  K+   +++P  + DGRN+   E+++  G+I +S
Sbjct: 370 DVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPVII-DGRNLFSLEEMQAAGYIYHS 428

Query: 412 IGKP 401
           IG+P
Sbjct: 429 IGRP 432



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>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 314 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 442
           D A+     P DV+ E    +G  VL+PP    AD VD E  +PE
Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845



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>ILVD_HALMA (Q5V545) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 575

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 383 LEPPVERLADGVDDEADLPELLG---VDDVAAVEDEGRLLHVVEDLLVVQRLELVPLGED 553
           L+   +   DG+DD   +P   G   + D  ++  EG    ++   ++   +ELV  GE 
Sbjct: 65  LDDVADAAYDGIDDTEGMPIEFGTITISDAISMGTEGMKASLISREIIADSVELVTFGER 124

Query: 554 AHGVGALGG 580
             G+  +GG
Sbjct: 125 MDGIVTIGG 133



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>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase|
          Length = 893

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 404 LADGVDDEADLPELLGVDDVAAVEDEG---RLLHVVEDLLVVQRLELVPLGEDAHGVGAL 574
           LA+G+D  A LP L+ +D+     D G   RL+ +VED+      +++ +  D   VGA 
Sbjct: 803 LAEGIDGAAPLPPLI-LDEPTVFLDGGHVSRLVDLVEDMQSRGVKQILIVSHDEDLVGAA 861

Query: 575 GGLVRV 592
             LVRV
Sbjct: 862 DDLVRV 867



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>SYD_XANOR (Q5H2B1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 588

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529
           +L D   +++  VE +A G D  A+L ++   LG +DV  VE   R  H V D L   ++
Sbjct: 37  DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRTGKV 95

Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607
           E++     A  +  L     +P HAH
Sbjct: 96  EVI-----ATRISILNKAAPLPFHAH 116



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>SYD_XANOM (Q2P582) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 588

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529
           +L D   +++  VE +A G D  A+L ++   LG +DV  VE   R  H V D L   ++
Sbjct: 37  DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRTGKV 95

Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607
           E++     A  +  L     +P HAH
Sbjct: 96  EVI-----ATRISILNKAAPLPFHAH 116



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>SYD_XANC5 (Q3BQE6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 588

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529
           +L D   +++  VE +A G D  A+L ++   LG +DV  VE   R  H V D L   ++
Sbjct: 37  DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRSGKV 95

Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607
           E++     A  +  L     +P HAH
Sbjct: 96  EVI-----ATRISILNKAAPLPFHAH 116



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>SYD_XANAC (Q8PHU5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 588

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529
           +L D   +++  VE +A G D  A+L ++   LG +DV  VE   R  H V D L   ++
Sbjct: 37  DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRSGKV 95

Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607
           E++     A  +  L     +P HAH
Sbjct: 96  EVI-----ATRISILNKAAPLPFHAH 116



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>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)|
          Length = 302

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 305 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAA 469
           A  D AA  ++ PAD E E + +    +E  ++ LAD V+ E +  E   VDD AA
Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAA 284



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>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor|
          Length = 1953

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 308 PIDDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDE 481
           P  D  G  T P D  +     DGG+V  P      DG DD    P+  G DDVA  +D 
Sbjct: 99  PKPDNGGDVTPPDDGGNVTPPDDGGNVTPPD-----DGGDDNVTPPDDSGDDDVAPPDDS 153

Query: 482 G 484
           G
Sbjct: 154 G 154



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>RPOB1_HALSA (P15351) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)|
          Length = 607

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 31/93 (33%), Positives = 44/93 (47%)
 Frame = +2

Query: 323 AGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDEGRLLHVV 502
           AGR  RP  V  E G+   V +  VE + +G  D  DL E   V+ + A E+E  L+ V 
Sbjct: 58  AGRARRPLLVV-ENGEPV-VTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVE 115

Query: 503 EDLLVVQRLELVPLGEDAHGVGALGGLVRVPHH 601
           E+ L      L    +   G+GA  G++  P H
Sbjct: 116 EEELTTDHTHLEIDPQLIFGIGA--GMIPYPEH 146



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>HIS7_PYRAE (Q8ZY15) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 186

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +2

Query: 329 RQTRPADVESELGDGGHV-LEPPVERLADGVDDEADLPELLGVDDVAAVE----DEGRLL 493
           R+T   +V  EL  GG + +E P+  L   ++       L GV  V AVE    D+G   
Sbjct: 5   RKTLETEVAVELRRGGDLAVETPIPFLTHMLETLLKYAGLGGV--VKAVELRKLDDGH-- 60

Query: 494 HVVEDLLVVQRLELVPLGEDAHGVGALGGLV 586
           HV+ED+ +     L  L ED  G+   G  V
Sbjct: 61  HVIEDVAIAVGRALDALLEDRRGIARFGHAV 91



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>PBX4_HUMAN (Q9BYU1) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4) (Fragment)
          Length = 330

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -1

Query: 580 ATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKP 401
           A KG   +  ++ W   K + YKK     Q+ A ++ G+  VD  ++   G     +  P
Sbjct: 203 ARKGGLTISQVSNWFGNKRIRYKKNMGKFQEEATIYTGKTAVDTTEVGVPGNHASCLSTP 262

Query: 400 LDG 392
             G
Sbjct: 263 SSG 265



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>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 564

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +2

Query: 299 PAAPIDDAAGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED 478
           P   +  A+G  + PA        GG   E   E L +  +DE +  ELL  DD   +ED
Sbjct: 200 PEERLSAASGPGSAPA------AGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLED 253

Query: 479 EGRLL 493
           + R L
Sbjct: 254 DARAL 258



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>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1449

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 520 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 395
           DY +I   +Q   F+    NV D E+LRE+   +Y +GK +D
Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742



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>Y4747_STRCO (O86788) Hypothetical UPF0079 protein SCO4747|
          Length = 148

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 344 ADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED--EGRLLHVVEDLL 514
           A V   LGDG  ++     RL+ G+D+  DL   + + D   V +  EG++  + ED L
Sbjct: 53  ARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLSDSVIVVEWGEGKVEELTEDRL 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,562,269
Number of Sequences: 219361
Number of extensions: 1628235
Number of successful extensions: 5504
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5495
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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