| Clone Name | rbags30d14 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 156 bits (394), Expect = 5e-38 Identities = 72/81 (88%), Positives = 78/81 (96%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428 VSVVWDAYEATK AH +CILTEW+EFK+LDY+KIFDNMQKPAFVFDGRN+VDA+KLREIG Sbjct: 400 VSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIG 459 Query: 427 FIVYSIGKPLDGWLKDMPAVA 365 FIVYSIGKPLD WLKDMPAVA Sbjct: 460 FIVYSIGKPLDPWLKDMPAVA 480
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 80.5 bits (197), Expect = 4e-15 Identities = 34/68 (50%), Positives = 50/68 (73%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428 V + D Y A + HA+ I TEW+EF LD+K+I+ +M KPA++FDGR ++D E+L++IG Sbjct: 392 VQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIG 451 Query: 427 FIVYSIGK 404 F V +IGK Sbjct: 452 FHVQTIGK 459
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 78.6 bits (192), Expect = 1e-14 Identities = 35/71 (49%), Positives = 51/71 (71%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIG 428 ++V D Y A +GAHA+ +LTEW+EF L+Y +I ++MQ PA +FDGR ++D + LREIG Sbjct: 400 ITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIG 459 Query: 427 FIVYSIGKPLD 395 F ++IG D Sbjct: 460 FRTFAIGTSPD 470
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 76.6 bits (187), Expect = 5e-14 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 2/70 (2%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434 V++ D YEA GAHAV I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ Sbjct: 395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQT 454 Query: 433 IGFIVYSIGK 404 IGF + +IGK Sbjct: 455 IGFQIETIGK 464
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 76.6 bits (187), Expect = 5e-14 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 2/70 (2%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434 V++ D YEA GAHAV I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ Sbjct: 395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQT 454 Query: 433 IGFIVYSIGK 404 IGF + +IGK Sbjct: 455 IGFQIETIGK 464
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 75.5 bits (184), Expect = 1e-13 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434 V++ D YEA GAHA+ I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ Sbjct: 395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQT 454 Query: 433 IGFIVYSIGK 404 IGF + +IGK Sbjct: 455 IGFQIETIGK 464
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 75.5 bits (184), Expect = 1e-13 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%) Frame = -1 Query: 607 VSVVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLRE 434 V++ D YEA GAHA+ I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ Sbjct: 395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQT 454 Query: 433 IGFIVYSIGK 404 IGF + +IGK Sbjct: 455 IGFQIETIGK 464
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/68 (41%), Positives = 43/68 (63%) Frame = -1 Query: 586 YEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIG 407 Y A +GA A+ ++TEW +F+ D++KI +M+ P V DGRN+ ++ E+GFI IG Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441 Query: 406 KPLDGWLK 383 +P G K Sbjct: 442 RPRAGHCK 449
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 56.2 bits (134), Expect = 7e-08 Identities = 24/64 (37%), Positives = 43/64 (67%) Frame = -1 Query: 589 AYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSI 410 A +A K + I TEW+EFK L++++I+D ++ P + D RN++D E +++IGF Y++ Sbjct: 370 AVDACKSVDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAV 428 Query: 409 GKPL 398 G + Sbjct: 429 GSKI 432
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/64 (39%), Positives = 42/64 (65%) Frame = -1 Query: 589 AYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSI 410 A EA K + I TEW+EFK L++++I+ N+ K + D RN++D E +++IGF Y++ Sbjct: 372 AVEACKSVDIIVIATEWSEFKELNWQEIY-NLVKSPMIIDLRNILDNEVMKKIGFRYYAV 430 Query: 409 GKPL 398 G + Sbjct: 431 GSQI 434
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = -1 Query: 592 DAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYS 413 D YEA A A+ I+TEWNEF++LD+ ++ M+ P V D RN+ +++ + GF S Sbjct: 374 DPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYAS 432 Query: 412 IGKP 401 IG+P Sbjct: 433 IGRP 436
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 53.1 bits (126), Expect = 6e-07 Identities = 26/66 (39%), Positives = 41/66 (62%) Frame = -1 Query: 601 VVWDAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFI 422 V+ D YE K + I E+ +F D++KI N+ K VFDGRN++D EK++++GF Sbjct: 832 VLDDLYETVKNVDGIIITVEY-DFNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFK 889 Query: 421 VYSIGK 404 Y +G+ Sbjct: 890 YYGVGR 895
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/64 (35%), Positives = 39/64 (60%) Frame = -1 Query: 592 DAYEATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYS 413 D Y A + A ILT+W E K ++ K+ +++P + DGRN+ E+++ G+I +S Sbjct: 370 DVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPVII-DGRNLFSLEEMQAAGYIYHS 428 Query: 412 IGKP 401 IG+P Sbjct: 429 IGRP 432
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid| X receptor-interacting protein 13) (RIP13) Length = 2453 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +2 Query: 314 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 442 D A+ P DV+ E +G VL+PP AD VD E +PE Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845
>ILVD_HALMA (Q5V545) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 575 Score = 33.9 bits (76), Expect = 0.38 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = +2 Query: 383 LEPPVERLADGVDDEADLPELLG---VDDVAAVEDEGRLLHVVEDLLVVQRLELVPLGED 553 L+ + DG+DD +P G + D ++ EG ++ ++ +ELV GE Sbjct: 65 LDDVADAAYDGIDDTEGMPIEFGTITISDAISMGTEGMKASLISREIIADSVELVTFGER 124 Query: 554 AHGVGALGG 580 G+ +GG Sbjct: 125 MDGIVTIGG 133
>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase| Length = 893 Score = 32.7 bits (73), Expect = 0.84 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = +2 Query: 404 LADGVDDEADLPELLGVDDVAAVEDEG---RLLHVVEDLLVVQRLELVPLGEDAHGVGAL 574 LA+G+D A LP L+ +D+ D G RL+ +VED+ +++ + D VGA Sbjct: 803 LAEGIDGAAPLPPLI-LDEPTVFLDGGHVSRLVDLVEDMQSRGVKQILIVSHDEDLVGAA 861 Query: 575 GGLVRV 592 LVRV Sbjct: 862 DDLVRV 867
>SYD_XANOR (Q5H2B1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 32.0 bits (71), Expect = 1.4 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +2 Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529 +L D +++ VE +A G D A+L ++ LG +DV VE R H V D L ++ Sbjct: 37 DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRTGKV 95 Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607 E++ A + L +P HAH Sbjct: 96 EVI-----ATRISILNKAAPLPFHAH 116
>SYD_XANOM (Q2P582) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 32.0 bits (71), Expect = 1.4 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +2 Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529 +L D +++ VE +A G D A+L ++ LG +DV VE R H V D L ++ Sbjct: 37 DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRTGKV 95 Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607 E++ A + L +P HAH Sbjct: 96 EVI-----ATRISILNKAAPLPFHAH 116
>SYD_XANC5 (Q3BQE6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 31.2 bits (69), Expect = 2.4 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +2 Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529 +L D +++ VE +A G D A+L ++ LG +DV VE R H V D L ++ Sbjct: 37 DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRSGKV 95 Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607 E++ A + L +P HAH Sbjct: 96 EVI-----ATRISILNKAAPLPFHAH 116
>SYD_XANAC (Q8PHU5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 31.2 bits (69), Expect = 2.4 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +2 Query: 359 ELGDGGHVLEPPVERLADGVDDEADLPEL---LGVDDVAAVEDEGRLLHVVEDLLVVQRL 529 +L D +++ VE +A G D A+L ++ LG +DV VE R H V D L ++ Sbjct: 37 DLRDHEGIVQVTVEPVA-GDDASAELFKVAASLGYEDVLQVEGVVRARHAVNDKLRSGKV 95 Query: 530 ELVPLGEDAHGVGALGGLVRVPHHAH 607 E++ A + L +P HAH Sbjct: 96 EVI-----ATRISILNKAAPLPFHAH 116
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 305 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAA 469 A D AA ++ PAD E E + + +E ++ LAD V+ E + E VDD AA Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAA 284
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +2 Query: 308 PIDDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDE 481 P D G T P D + DGG+V P DG DD P+ G DDVA +D Sbjct: 99 PKPDNGGDVTPPDDGGNVTPPDDGGNVTPPD-----DGGDDNVTPPDDSGDDDVAPPDDS 153 Query: 482 G 484 G Sbjct: 154 G 154
>RPOB1_HALSA (P15351) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 607 Score = 30.4 bits (67), Expect = 4.2 Identities = 31/93 (33%), Positives = 44/93 (47%) Frame = +2 Query: 323 AGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDEGRLLHVV 502 AGR RP V E G+ V + VE + +G D DL E V+ + A E+E L+ V Sbjct: 58 AGRARRPLLVV-ENGEPV-VTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVE 115 Query: 503 EDLLVVQRLELVPLGEDAHGVGALGGLVRVPHH 601 E+ L L + G+GA G++ P H Sbjct: 116 EEELTTDHTHLEIDPQLIFGIGA--GMIPYPEH 146
>HIS7_PYRAE (Q8ZY15) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)| (IGPD) Length = 186 Score = 30.0 bits (66), Expect = 5.4 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Frame = +2 Query: 329 RQTRPADVESELGDGGHV-LEPPVERLADGVDDEADLPELLGVDDVAAVE----DEGRLL 493 R+T +V EL GG + +E P+ L ++ L GV V AVE D+G Sbjct: 5 RKTLETEVAVELRRGGDLAVETPIPFLTHMLETLLKYAGLGGV--VKAVELRKLDDGH-- 60 Query: 494 HVVEDLLVVQRLELVPLGEDAHGVGALGGLV 586 HV+ED+ + L L ED G+ G V Sbjct: 61 HVIEDVAIAVGRALDALLEDRRGIARFGHAV 91
>PBX4_HUMAN (Q9BYU1) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) (Fragment) Length = 330 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -1 Query: 580 ATKGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKP 401 A KG + ++ W K + YKK Q+ A ++ G+ VD ++ G + P Sbjct: 203 ARKGGLTISQVSNWFGNKRIRYKKNMGKFQEEATIYTGKTAVDTTEVGVPGNHASCLSTP 262 Query: 400 LDG 392 G Sbjct: 263 SSG 265
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 29.6 bits (65), Expect = 7.1 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +2 Query: 299 PAAPIDDAAGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED 478 P + A+G + PA GG E E L + +DE + ELL DD +ED Sbjct: 200 PEERLSAASGPGSAPA------AGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLED 253 Query: 479 EGRLL 493 + R L Sbjct: 254 DARAL 258
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 520 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 395 DY +I +Q F+ NV D E+LRE+ +Y +GK +D Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742
>Y4747_STRCO (O86788) Hypothetical UPF0079 protein SCO4747| Length = 148 Score = 29.3 bits (64), Expect = 9.3 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 344 ADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED--EGRLLHVVEDLL 514 A V LGDG ++ RL+ G+D+ DL + + D V + EG++ + ED L Sbjct: 53 ARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLSDSVIVVEWGEGKVEELTEDRL 111 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,562,269 Number of Sequences: 219361 Number of extensions: 1628235 Number of successful extensions: 5504 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5495 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)