ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30d12 |
|---|---|
| Clone Library Name | barley_pub |
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 36.6 bits (83), Expect = 0.056 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -2 Query: 589 SRDKPSILPVNDTSKNKTPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGPGSS 410 S+ P+ +DT K+ T SPKSP ++RT ++ +EH + SSS SS Sbjct: 115 SKTAPTPAGASDTIKSTTKRSPKSP--TTRTIKVVESEELTEEHSDSENQESSSSSSSSS 172 Query: 409 DVLEK 395 + K Sbjct: 173 STIRK 177
>CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (Cell division| control protein 27) (Anaphase-promoting complex subunit 3) Length = 758 Score = 34.3 bits (77), Expect = 0.28 Identities = 14/42 (33%), Positives = 28/42 (66%) Frame = -2 Query: 553 TSKNKTPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSS 428 T +NK ++PK+PA++S+T +A NN+++ P + + + S Sbjct: 296 TCQNKNTQTPKNPAINSKTSSALPNNISMNLVSPSSKQPTIS 337
>POLG_YEFV2 (P19901) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3411 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 423 PTDDDLSAAGG*CS*TATLFLVAAYVLELTAGDFGDSGVLFLLVSLTGRIDGLSLE 590 P ++ L+AAG L +A +E G G+L +LVS+ GR+DGL L+ Sbjct: 1357 PVNEALAAAGL----VGVLAGLAFQEMENFLGPIAVGGLLMMLVSVAGRVDGLELK 1408
>POLG_YEFV1 (P03314) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3411 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 423 PTDDDLSAAGG*CS*TATLFLVAAYVLELTAGDFGDSGVLFLLVSLTGRIDGLSLE 590 P ++ L+AAG L +A +E G G+L +LVS+ GR+DGL L+ Sbjct: 1357 PVNEALAAAGL----VGVLAGLAFQEMENFLGPIAVGGLLMMLVSVAGRVDGLELK 1408
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat protein 3)| (TPR repeat protein D) Length = 2025 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 562 VNDTSKNKTPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGP 419 V + SK K P+ K V S T + T NN + + S S GP Sbjct: 1019 VKNKSKKKKPKDSKPMLVGSGTTSVTSNNEIITSSEDHSNRNSDSAGP 1066
>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1424 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 470 RSRASPPCRGEIIVRWPRLVRRARKGPSCHCCSHPCLRRRLDSGRTC 330 +SR PCR + PRL+ +A PS HC R + S R C Sbjct: 31 QSRLQRPCRRRRLQPPPRLLIQAPIHPSRHCTQSRTAHRSIRSPRRC 77
>GLIP1_MOUSE (Q9CWG1) Glioma pathogenesis-related protein 1 precursor (GliPR 1)| Length = 255 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -1 Query: 536 SRVPEITCCEFKNICCHQE*CGRSRASPPCRGEIIVRW-PRLVRRARK-GPSCHCCSHPC 363 S +P+IT +F C RS+ SPP R + + W P+L + A+ SC +P Sbjct: 23 STLPDITNEDFIKECVQVHNQLRSKVSPPARNMLYMSWDPKLAQIAKAWTKSCEFKHNPQ 82 Query: 362 LRRRL 348 L R+ Sbjct: 83 LHSRI 87
>TNR6_MACMU (Q9BDP2) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 333 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = -2 Query: 211 LCKCVAWSHADLSFMDHEL*QIIAVVKTKCPSSLQHEGLSIDRSFCHKVCTFG 53 L KCV D+S EL +I+ ++T+ L HEG FC C G Sbjct: 19 LSKCVNAQVTDISSKGFELRKIVTTIETQNLEGLHHEG-----QFCRNPCPPG 66
>TNR6_MACNE (Q9BDN0) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = -2 Query: 211 LCKCVAWSHADLSFMDHEL*QIIAVVKTKCPSSLQHEGLSIDRSFCHKVCTFG 53 L KCV D+S EL +I+ ++T+ L HEG FC C G Sbjct: 19 LSKCVNAQVTDISSKGFELRKIVTTIETQNLEGLHHEG-----QFCRNPCPPG 66
>TNR6_MACFA (Q9TSN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = -2 Query: 211 LCKCVAWSHADLSFMDHEL*QIIAVVKTKCPSSLQHEGLSIDRSFCHKVCTFG 53 L KCV D+S EL +I+ ++T+ L HEG FC C G Sbjct: 19 LSKCVNAQVTDISSKGFELRKIVTTIETQNLEGLHHEG-----QFCRNPCPPG 66
>GVPD_HALME (Q02229) Protein gvpD| Length = 545 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = -2 Query: 556 DTSKNKTPESPKSPAVSSRTYAATKNNVAVQEHHPPA------AERSSSVG 422 DTS+ TP +SP V + T + K + E +PPA ERS+++G Sbjct: 371 DTSQTATPSDAESP-VGTETELSEKVETELSEENPPAPGEVVDTERSTTIG 420
>MRP_RAT (Q9EPH2) MARCKS-related protein (MARCKS-like protein 1) (Macrophage| myristoylated alanine-rich C kinase substrate) (Mac-MARCKS) (MacMARCKS) (Brain protein F52) Length = 198 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = -2 Query: 538 TPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGPGS 413 TPES + A + A +K A +E P AAE S+ GP S Sbjct: 147 TPESQEPQAKGAEASAVSKGGDAEEEAGPQAAEPSTPSGPES 188
>YI2A_ECOLI (P51026) Insertion element IS2A hypothetical 48.2 kDa protein| Length = 424 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Frame = -3 Query: 102 KDYQSIAP-----SATKSVHLAG*CYSDWHPHSAVKIR 4 +DY SI P +A K++ A Y++WHPHSA+ R Sbjct: 365 RDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 402
>MRP_MOUSE (P28667) MARCKS-related protein (MARCKS-like protein 1) (Macrophage| myristoylated alanine-rich C kinase substrate) (Mac-MARCKS) (MacMARCKS) (Brain protein F52) Length = 199 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = -2 Query: 538 TPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGPGS 413 TPES + A + AA+K +E P AAE S+ GP S Sbjct: 147 TPESQEPQAKGAEASAASKEGDTEEEAGPQAAEPSTPSGPES 188
>INSD_ECOLI (P19777) Transposase insD for insertion element IS2A/D/F/H/I/K| Length = 301 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Frame = -3 Query: 102 KDYQSIAP-----SATKSVHLAG*CYSDWHPHSAVKIR 4 +DY SI P +A K++ A Y++WHPHSA+ R Sbjct: 242 RDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 279
>ENGC_HAEIN (P45339) Probable GTPase engC (EC 3.6.1.-)| Length = 346 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +1 Query: 400 LARLTSLGQRTMISPR-----QGGDALERPHYSWWQHMFLNSQQVISGTREFYFCL 552 ++ + LGQ T S R QGG+ ++ P + L+++Q+ G REF + L Sbjct: 237 VSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVL 292
>TNR6_CERTO (Q9BDN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -2 Query: 211 LCKCVAWSHADLSFMDHEL*QIIAVVKTKCPSSLQHEGLSIDRSFCHKVCTFG 53 L KCV D++ EL +I+ ++T+ L HEG FC C G Sbjct: 19 LSKCVNAQVTDINSKGFELRKIVTTIETRNLEGLHHEG-----QFCRNPCPPG 66
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = -2 Query: 571 ILPVNDTSKNKTP--ESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGP 419 +LP T N P S K P+V R A ++VQ H P + + VGP Sbjct: 1095 VLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGP 1147
>RNF39_RAT (Q920M2) RING finger protein 39 (LTP-induced RING finger protein)| Length = 352 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 392 PSCHCCSHPCLRRRLDS 342 PSC CC PC RR L S Sbjct: 61 PSCPCCGQPCPRRSLRS 77
>ATS15_HUMAN (Q8TE58) ADAMTS-15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 15) (ADAM-TS 15) (ADAM-TS15) Length = 950 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -2 Query: 547 KNKTPESPKSPAVSSRTYAATKNNVAVQEHHPPAAERSSSVGPGSS 410 K+ P+ P+ P+V + + N V + PPA + S GP S+ Sbjct: 808 KSSHPKDPRGPSVLHNSVLSLSNQVEQPDDRPPARWVAGSWGPCSA 853 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,285,507 Number of Sequences: 219361 Number of extensions: 1675211 Number of successful extensions: 4694 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4688 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
