ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1l02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475993.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 612 Score = 113 bits (57), Expect = 8e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 269 ggtgtctggccgcgcgtccggcgtcgtggccacacacgccatggccacctgcagtagtgc 328 |||||| || || |||||||||| ||||| || |||||||||||||||||||| || || Sbjct: 501 ggtgtccgggcgggcgtccggcgcggtggcgacgcacgccatggccacctgcagcagcgc 442 Query: 329 caccatctcctcttcggcgcccccatccagttgcaccagctccgcgtcgaacacctctgc 388 |||||||||||| || |||| ||| | || ||||||||||| ||||||||||||| || Sbjct: 441 caccatctcctcctccgcgctcccgccgagccgcaccagctccacgtcgaacacctccgc 382 Query: 389 cgtccactcctcccttaccactgactgtaccca 421 ||||||||||||| ||||| ||||| ||||| Sbjct: 381 ggtccactcctcccgcaccaccgactgcaccca 349 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Minus Query: 484 tgccggtgaggatctcaaggaaaagtactccaagcgagtatatgtccgacttgaatgtgg 543 |||||||||||| ||| ||||| || || || |||||||| | ||| |||||||| || | Sbjct: 295 tgccggtgaggagctccaggaacagcacccccagcgagtacacgtcggacttgaacgtcg 236 Query: 544 gtcgacgcgcatccacgagctctggtgcacgatacccgcc 583 | || ||||| ||||| ||||| || || || |||||||| Sbjct: 235 gccgccgcgcgtccaccagctccggcgcccggtacccgcc 196
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 113 bits (57), Expect = 8e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 269 ggtgtctggccgcgcgtccggcgtcgtggccacacacgccatggccacctgcagtagtgc 328 |||||| || || |||||||||| ||||| || |||||||||||||||||||| || || Sbjct: 100945 ggtgtccgggcgggcgtccggcgcggtggcgacgcacgccatggccacctgcagcagcgc 100886 Query: 329 caccatctcctcttcggcgcccccatccagttgcaccagctccgcgtcgaacacctctgc 388 |||||||||||| || |||| ||| | || ||||||||||| ||||||||||||| || Sbjct: 100885 caccatctcctcctccgcgctcccgccgagccgcaccagctccacgtcgaacacctccgc 100826 Query: 389 cgtccactcctcccttaccactgactgtaccca 421 ||||||||||||| ||||| ||||| ||||| Sbjct: 100825 ggtccactcctcccgcaccaccgactgcaccca 100793 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Minus Query: 484 tgccggtgaggatctcaaggaaaagtactccaagcgagtatatgtccgacttgaatgtgg 543 |||||||||||| ||| ||||| || || || |||||||| | ||| |||||||| || | Sbjct: 100739 tgccggtgaggagctccaggaacagcacccccagcgagtacacgtcggacttgaacgtcg 100680 Query: 544 gtcgacgcgcatccacgagctctggtgcacgatacccgcc 583 | || ||||| ||||| ||||| || || || |||||||| Sbjct: 100679 gccgccgcgcgtccaccagctccggcgcccggtacccgcc 100640
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 113 bits (57), Expect = 8e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 269 ggtgtctggccgcgcgtccggcgtcgtggccacacacgccatggccacctgcagtagtgc 328 |||||| || || |||||||||| ||||| || |||||||||||||||||||| || || Sbjct: 17114 ggtgtccgggcgggcgtccggcgcggtggcgacgcacgccatggccacctgcagcagcgc 17055 Query: 329 caccatctcctcttcggcgcccccatccagttgcaccagctccgcgtcgaacacctctgc 388 |||||||||||| || |||| ||| | || ||||||||||| ||||||||||||| || Sbjct: 17054 caccatctcctcctccgcgctcccgccgagccgcaccagctccacgtcgaacacctccgc 16995 Query: 389 cgtccactcctcccttaccactgactgtaccca 421 ||||||||||||| ||||| ||||| ||||| Sbjct: 16994 ggtccactcctcccgcaccaccgactgcaccca 16962 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Minus Query: 484 tgccggtgaggatctcaaggaaaagtactccaagcgagtatatgtccgacttgaatgtgg 543 |||||||||||| ||| ||||| || || || |||||||| | ||| |||||||| || | Sbjct: 16908 tgccggtgaggagctccaggaacagcacccccagcgagtacacgtcggacttgaacgtcg 16849 Query: 544 gtcgacgcgcatccacgagctctggtgcacgatacccgcc 583 | || ||||| ||||| ||||| || || || |||||||| Sbjct: 16848 gccgccgcgcgtccaccagctccggcgcccggtacccgcc 16809
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 8e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 269 ggtgtctggccgcgcgtccggcgtcgtggccacacacgccatggccacctgcagtagtgc 328 |||||| || || |||||||||| ||||| || |||||||||||||||||||| || || Sbjct: 29090890 ggtgtccgggcgggcgtccggcgcggtggcgacgcacgccatggccacctgcagcagcgc 29090831 Query: 329 caccatctcctcttcggcgcccccatccagttgcaccagctccgcgtcgaacacctctgc 388 |||||||||||| || |||| ||| | || ||||||||||| ||||||||||||| || Sbjct: 29090830 caccatctcctcctccgcgctcccgccgagccgcaccagctccacgtcgaacacctccgc 29090771 Query: 389 cgtccactcctcccttaccactgactgtaccca 421 ||||||||||||| ||||| ||||| ||||| Sbjct: 29090770 ggtccactcctcccgcaccaccgactgcaccca 29090738 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Minus Query: 484 tgccggtgaggatctcaaggaaaagtactccaagcgagtatatgtccgacttgaatgtgg 543 |||||||||||| ||| ||||| || || || |||||||| | ||| |||||||| || | Sbjct: 29090684 tgccggtgaggagctccaggaacagcacccccagcgagtacacgtcggacttgaacgtcg 29090625 Query: 544 gtcgacgcgcatccacgagctctggtgcacgatacccgcc 583 | || ||||| ||||| ||||| || || || |||||||| Sbjct: 29090624 gccgccgcgcgtccaccagctccggcgcccggtacccgcc 29090585
>gb|AY112194.1| Zea mays CL11683_1 mRNA sequence Length = 641 Score = 113 bits (57), Expect = 8e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 293 cgtggccacacacgccatggccacctgcagtagtgccaccatctcctcttcggcgccccc 352 ||||||||| |||||||||||||||||||| || |||||||||||||| ||||||| | Sbjct: 390 cgtggccacgcacgccatggccacctgcagcagcgccaccatctcctcctcggcgctggc 449 Query: 353 atccagttgcaccagctccgcgtcgaacacctctgccgtccactcctcccttaccactga 412 |||| |||||||||| ||||||||||||| || ||||||||||||| ||||| || Sbjct: 450 gcccaggcgcaccagctcgacgtcgaacacctcggcggtccactcctcccgcaccacgga 509 Query: 413 ctgtacccatcgtggcaggtc 433 ||| ||||| || |||||||| Sbjct: 510 ctgcacccagcggggcaggtc 530
>dbj|AK060360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H06, full insert sequence Length = 958 Score = 113 bits (57), Expect = 8e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 269 ggtgtctggccgcgcgtccggcgtcgtggccacacacgccatggccacctgcagtagtgc 328 |||||| || || |||||||||| ||||| || |||||||||||||||||||| || || Sbjct: 504 ggtgtccgggcgggcgtccggcgcggtggcgacgcacgccatggccacctgcagcagcgc 445 Query: 329 caccatctcctcttcggcgcccccatccagttgcaccagctccgcgtcgaacacctctgc 388 |||||||||||| || |||| ||| | || ||||||||||| ||||||||||||| || Sbjct: 444 caccatctcctcctccgcgctcccgccgagccgcaccagctccacgtcgaacacctccgc 385 Query: 389 cgtccactcctcccttaccactgactgtaccca 421 ||||||||||||| ||||| ||||| ||||| Sbjct: 384 ggtccactcctcccgcaccaccgactgcaccca 352 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Minus Query: 484 tgccggtgaggatctcaaggaaaagtactccaagcgagtatatgtccgacttgaatgtgg 543 |||||||||||| ||| ||||| || || || |||||||| | ||| |||||||| || | Sbjct: 298 tgccggtgaggagctccaggaacagcacccccagcgagtacacgtcggacttgaacgtcg 239 Query: 544 gtcgacgcgcatccacgagctctggtgcacgatacccgcc 583 | || ||||| ||||| ||||| || || || |||||||| Sbjct: 238 gccgccgcgcgtccaccagctccggcgcccggtacccgcc 199
>ref|NM_192711.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 101 bits (51), Expect = 3e-18 Identities = 159/195 (81%) Strand = Plus / Minus Query: 239 gatctcctcaaccatcctcacgacctcagaggtgtctggccgcgcgtccggcgtcgtggc 298 ||||||||| | |||||| || || || | || ||| ||||||||||| ||| ||||| Sbjct: 513 gatctcctcgatcatcctgaccacgtcgggggcgtcgggccgcgcgtcgggcacggtggc 454 Query: 299 cacacacgccatggccacctgcagtagtgccaccatctcctcttcggcgcccccatccag 358 || ||||||||||||||||| || || |||||||||||||| || |||| | | | || Sbjct: 453 gacgcacgccatggccacctggagcagcgccaccatctcctcctccgcgctcgcgccgag 394 Query: 359 ttgcaccagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtac 418 |||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| || Sbjct: 393 ccgcaccagctcgacgtcgaacacctccgccgtccactcctcccgcaccacggactgcac 334 Query: 419 ccatcgtggcaggtc 433 ||| ||||| ||||| Sbjct: 333 ccaccgtgggaggtc 319
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 101 bits (51), Expect = 3e-18 Identities = 159/195 (81%) Strand = Plus / Plus Query: 239 gatctcctcaaccatcctcacgacctcagaggtgtctggccgcgcgtccggcgtcgtggc 298 ||||||||| | |||||| || || || | || ||| ||||||||||| ||| ||||| Sbjct: 23972596 gatctcctcgatcatcctgaccacgtcgggggcgtcgggccgcgcgtcgggcacggtggc 23972655 Query: 299 cacacacgccatggccacctgcagtagtgccaccatctcctcttcggcgcccccatccag 358 || ||||||||||||||||| || || |||||||||||||| || |||| | | | || Sbjct: 23972656 gacgcacgccatggccacctggagcagcgccaccatctcctcctccgcgctcgcgccgag 23972715 Query: 359 ttgcaccagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtac 418 |||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| || Sbjct: 23972716 ccgcaccagctcgacgtcgaacacctccgccgtccactcctcccgcaccacggactgcac 23972775 Query: 419 ccatcgtggcaggtc 433 ||| ||||| ||||| Sbjct: 23972776 ccaccgtgggaggtc 23972790 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcg 424 ||||||| |||||||||||| | ||||||||||||||| ||||| ||||| ||||| || Sbjct: 1868922 cagctccaggtcgaacacctccgacgtccactcctccctcaccaccgactgcacccaccg 1868863 Query: 425 tggcag 430 ||||| Sbjct: 1868862 cggcag 1868857 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctc 400 ||||||| ||||||||||||| | ||||||||||| Sbjct: 29546836 cagctccacgtcgaacacctccgaggtccactcctc 29546801
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 101 bits (51), Expect = 3e-18 Identities = 159/195 (81%) Strand = Plus / Plus Query: 239 gatctcctcaaccatcctcacgacctcagaggtgtctggccgcgcgtccggcgtcgtggc 298 ||||||||| | |||||| || || || | || ||| ||||||||||| ||| ||||| Sbjct: 119000 gatctcctcgatcatcctgaccacgtcgggggcgtcgggccgcgcgtcgggcacggtggc 119059 Query: 299 cacacacgccatggccacctgcagtagtgccaccatctcctcttcggcgcccccatccag 358 || ||||||||||||||||| || || |||||||||||||| || |||| | | | || Sbjct: 119060 gacgcacgccatggccacctggagcagcgccaccatctcctcctccgcgctcgcgccgag 119119 Query: 359 ttgcaccagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtac 418 |||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| || Sbjct: 119120 ccgcaccagctcgacgtcgaacacctccgccgtccactcctcccgcaccacggactgcac 119179 Query: 419 ccatcgtggcaggtc 433 ||| ||||| ||||| Sbjct: 119180 ccaccgtgggaggtc 119194
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 101 bits (51), Expect = 3e-18 Identities = 159/195 (81%) Strand = Plus / Plus Query: 239 gatctcctcaaccatcctcacgacctcagaggtgtctggccgcgcgtccggcgtcgtggc 298 ||||||||| | |||||| || || || | || ||| ||||||||||| ||| ||||| Sbjct: 87118 gatctcctcgatcatcctgaccacgtcgggggcgtcgggccgcgcgtcgggcacggtggc 87177 Query: 299 cacacacgccatggccacctgcagtagtgccaccatctcctcttcggcgcccccatccag 358 || ||||||||||||||||| || || |||||||||||||| || |||| | | | || Sbjct: 87178 gacgcacgccatggccacctggagcagcgccaccatctcctcctccgcgctcgcgccgag 87237 Query: 359 ttgcaccagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtac 418 |||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| || Sbjct: 87238 ccgcaccagctcgacgtcgaacacctccgccgtccactcctcccgcaccacggactgcac 87297 Query: 419 ccatcgtggcaggtc 433 ||| ||||| ||||| Sbjct: 87298 ccaccgtgggaggtc 87312
>ref|XM_550037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2376 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcg 424 ||||||| |||||||||||| | ||||||||||||||| ||||| ||||| ||||| || Sbjct: 2145 cagctccaggtcgaacacctccgacgtccactcctccctcaccaccgactgcacccaccg 2086 Query: 425 tggcag 430 ||||| Sbjct: 2085 cggcag 2080
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| ||||||||||||| |||||||||||||||| Sbjct: 2250745 cagctccacgtcgaacacctccgccgtccactcctccc 2250782
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0083M16 Length = 179428 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcg 424 ||||||| |||||||||||| | ||||||||||||||| ||||| ||||| ||||| || Sbjct: 110304 cagctccaggtcgaacacctccgacgtccactcctccctcaccaccgactgcacccaccg 110245 Query: 425 tggcag 430 ||||| Sbjct: 110244 cggcag 110239
>dbj|AK121769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092C05, full insert sequence Length = 2612 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| ||||||||||||| |||||||||||||||| Sbjct: 2216 cagctccacgtcgaacacctccgccgtccactcctccc 2179
>dbj|AK109461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C09, full insert sequence Length = 3605 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| ||||||||||||| |||||||||||||||| Sbjct: 3094 cagctccacgtcgaacacctccgccgtccactcctccc 3057
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| ||||||||||||| |||||||||||||||| Sbjct: 2250689 cagctccacgtcgaacacctccgccgtccactcctccc 2250726
>emb|CR533581.1| Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0062G09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 28333 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| ||||||||||||| |||||||||||||||| Sbjct: 26067 cagctccacgtcgaacacctccgccgtccactcctccc 26030
>gb|AY111091.1| Zea mays CL25718_1 mRNA sequence Length = 671 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||||| |||| |||||||| |||||||||||||||| ||||| || || ||||||| Sbjct: 426 cagctccacgtcaaacacctcggccgtccactcctcccggaccaccgagtgcacccatc 484
>ref|XM_479550.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2294 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 1896 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1837 Query: 433 c 433 | Sbjct: 1836 c 1836
>ref|XM_507413.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0008J01.18 mRNA Length = 2473 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 2052 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1993 Query: 433 c 433 | Sbjct: 1992 c 1992
>ref|XM_506571.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0008J01.18 mRNA Length = 2414 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 1951 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1892 Query: 433 c 433 | Sbjct: 1891 c 1891
>ref|XM_472767.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2010 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 366 agctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| |||||||||||| | |||||||||||||| Sbjct: 1790 agctccgtgtcgaacacctcggacgtccactcctccc 1754
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 366 agctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| |||||||||||| | |||||||||||||| Sbjct: 91732 agctccgtgtcgaacacctcggacgtccactcctccc 91768
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 366 agctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| |||||||||||| | |||||||||||||| Sbjct: 23095392 agctccgtgtcgaacacctcggacgtccactcctccc 23095428
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctc 400 |||||||||||||| |||||||||||||| Sbjct: 13953510 gcgtcgaacacctcggccgtccactcctc 13953538 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctccc 402 |||||||||||| || ||||||||||||| Sbjct: 12575705 gtcgaacacctcggctgtccactcctccc 12575677
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 28810442 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 28810501 Query: 433 c 433 | Sbjct: 28810502 c 28810502
>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence Length = 186972 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 495 atctcaaggaaaagtactccaagcgagta 523 |||||||||||||||||| |||||||||| Sbjct: 131334 atctcaaggaaaagtactgcaagcgagta 131362
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 68128 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 68187 Query: 433 c 433 | Sbjct: 68188 c 68188
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctc 400 |||||||||||||| |||||||||||||| Sbjct: 107187 gcgtcgaacacctcggccgtccactcctc 107215
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctc 400 |||||||||||||| |||||||||||||| Sbjct: 55984 gcgtcgaacacctcggccgtccactcctc 56012
>dbj|AK120857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024D23, full insert sequence Length = 2416 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 366 agctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| |||||||||||| | |||||||||||||| Sbjct: 1900 agctccgtgtcgaacacctcggacgtccactcctccc 1864
>dbj|AK103917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A06, full insert sequence Length = 1380 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 959 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 900 Query: 433 c 433 | Sbjct: 899 c 899
>dbj|AK103598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133E19, full insert sequence Length = 2472 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 2051 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1992 Query: 433 c 433 | Sbjct: 1991 c 1991
>dbj|AK099672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069C23, full insert sequence Length = 2416 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 1951 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1892 Query: 433 c 433 | Sbjct: 1891 c 1891
>dbj|AK073851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073I12, full insert sequence Length = 2294 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggt 432 ||||||||||||| || ||||||||||| || ||||| || || ||||||| ||| |||| Sbjct: 1896 cgtcgaacacctcggctgtccactcctctctgaccaccgagtgcacccatcttggtaggt 1837 Query: 433 c 433 | Sbjct: 1836 c 1836
>emb|AL512547.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0812A04, complete sequence Length = 43144 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 366 agctccgcgtcgaacacctctgccgtccactcctccc 402 ||||||| |||||||||||| | |||||||||||||| Sbjct: 16315 agctccgtgtcgaacacctcggacgtccactcctccc 16351
>ref|NM_187694.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2028 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 1827 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 1768
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 6406223 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 6406164 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctccc 402 ||||||||||||| || ||||||||||||| Sbjct: 12264258 cgtcgaacacctcagcggtccactcctccc 12264229
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 86349 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 86290
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 6405436 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 6405377 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctccc 402 ||||||||||||| || ||||||||||||| Sbjct: 12261021 cgtcgaacacctcagcggtccactcctccc 12260992
>dbj|AK070591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055M11, full insert sequence Length = 1566 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 1008 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 949
>dbj|AK065199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E20, full insert sequence Length = 2451 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 1958 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 1899
>dbj|AK061811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A12, full insert sequence Length = 1123 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 633 gtcgaacacctcggcggtccactcctcccggacgacggactgcacccagcgcggcaggtc 574
>gb|AY107418.1| Zea mays PCO102965 mRNA sequence Length = 1084 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctcccttaccactgactgtacccatcgtggcaggtc 433 |||||||||||| || ||||||||||||| || || ||||| ||||| || |||||||| Sbjct: 564 gtcgaacacctcggcggtccactcctcccgcacgacggactgcacccagcgcggcaggtc 505
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 gcgctggtcgtcggcgtgcccga 175 ||||||||||||||||||||||| Sbjct: 3063857 gcgctggtcgtcggcgtgcccga 3063879
>ref|NM_105511.2| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT1G68400 mRNA, complete cds Length = 2405 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 1802 aacacttcagccgtccactcctctctcaccactgattggacccatc 1757
>ref|XM_482490.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1941 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 372 gcgtcgaacacctctgccgtccactcctcc 401 |||||||||||||| | ||||||||||||| Sbjct: 1745 gcgtcgaacacctccgacgtccactcctcc 1716
>gb|AE012215.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 123 of 460 of the complete genome Length = 12941 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 caccagctccgcgtcgaacacc 383 |||||||||||||||||||||| Sbjct: 12293 caccagctccgcgtcgaacacc 12272
>gb|AY102147.1| Arabidopsis thaliana At1g68400/T2E12_5 mRNA, complete cds Length = 2016 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 1775 aacacttcagccgtccactcctctctcaccactgattggacccatc 1730
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 caccagctccgcgtcgaacacc 383 |||||||||||||||||||||| Sbjct: 3678516 caccagctccgcgtcgaacacc 3678537
>gb|AF378890.1|AF378890 Arabidopsis thaliana At1g68400/T2E12_5 mRNA, complete cds Length = 2290 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 1805 aacacttcagccgtccactcctctctcaccactgattggacccatc 1760
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctcc 401 |||||||||||||| | ||||||||||||| Sbjct: 20559445 gcgtcgaacacctccgacgtccactcctcc 20559474
>emb|BX813615.1|CNS0ADUC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZA11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2159 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 1761 aacacttcagccgtccactcctctctcaccactgattggacccatc 1716
>gb|AC015986.4|AC015986 Arabidopsis thaliana chromosome 1 BAC T2E12 genomic sequence, complete sequence Length = 35229 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aacacctctgccgtccactcctcccttaccactgactgtacccatc 423 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 20476 aacacttcagccgtccactcctctctcaccactgattggacccatc 20431
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctccc 402 ||||||||||||| || ||||||||||||| Sbjct: 33791 cgtcgaacacctcagcggtccactcctccc 33762
>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0032E15 Length = 120419 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctcc 401 |||||||||||||| | ||||||||||||| Sbjct: 63406 gcgtcgaacacctccgacgtccactcctcc 63435
>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1663_D06 Length = 139103 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 372 gcgtcgaacacctctgccgtccactcctcc 401 |||||||||||||| | ||||||||||||| Sbjct: 33817 gcgtcgaacacctccgacgtccactcctcc 33846
>dbj|AK103073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118C07, full insert sequence Length = 2233 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctccc 402 ||||||||||||| || ||||||||||||| Sbjct: 1855 cgtcgaacacctcagcggtccactcctccc 1826
>ref|XM_450747.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1992 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctccc 402 |||||||||||| || ||||||||||||| Sbjct: 1794 gtcgaacacctcggctgtccactcctccc 1766
>gb|BT017642.1| Zea mays clone EL01N0438G12.c mRNA sequence Length = 1126 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Minus Query: 373 cgtcgaacacctctgccgtccactcctcccttaccactgactgtaccca 421 ||||||| ||||| | |||||||||||||| ||||| ||||| ||||| Sbjct: 776 cgtcgaagacctccgacgtccactcctcccggaccacggactgcaccca 728
>gb|AC154641.2| Mus musculus BAC clone RP23-276C17 from chromosome 16, complete sequence Length = 190523 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 acacaccaccatcacccacac 459 ||||||||||||||||||||| Sbjct: 160266 acacaccaccatcacccacac 160246
>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence Length = 195446 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 acacaccaccatcacccacac 459 ||||||||||||||||||||| Sbjct: 57926 acacaccaccatcacccacac 57906
>emb|AL645973.8| Mouse DNA sequence from clone RP23-287B6 on chromosome 11 Contains a pseudogene similar to part of ribosomal protein S2 (Rps2), a mitchondrial ribosomal protein S7 (Rpms7, MRP-S7) (Mrps7) pseudogene, a pseudogene similar to part of a novel protein, a novel gene and a eukaryotic translation initiation factor pseudogene, complete sequence Length = 196006 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 gttccctcatttttgttgttg 63 ||||||||||||||||||||| Sbjct: 46540 gttccctcatttttgttgttg 46520
>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162004 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gttccctcatttttgttgttg 63 ||||||||||||||||||||| Sbjct: 135633 gttccctcatttttgttgttg 135653
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 ttccctcatttttgttgttga 64 ||||||||||||||||||||| Sbjct: 27191968 ttccctcatttttgttgttga 27191988
>gb|AC005292.4|AC005292 Genomic sequence for Arabidopsis thaliana BAC F26F24 from chromosome I, complete sequence Length = 99053 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 ttcctttttataacaattaag 34 ||||||||||||||||||||| Sbjct: 65343 ttcctttttataacaattaag 65323
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 ttccctcatttttgttgttga 64 ||||||||||||||||||||| Sbjct: 88417 ttccctcatttttgttgttga 88437
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 ttccctcatttttgttgttga 64 ||||||||||||||||||||| Sbjct: 42639 ttccctcatttttgttgttga 42659
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctccc 402 |||||||||||| || ||||||||||||| Sbjct: 41643 gtcgaacacctcggctgtccactcctccc 41615
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 374 gtcgaacacctctgccgtccactcctccc 402 |||||||||||| || ||||||||||||| Sbjct: 91032 gtcgaacacctcggctgtccactcctccc 91004
>ref|NM_125216.2| Arabidopsis thaliana catalytic/ hydrolase AT5G58310 mRNA, complete cds Length = 1516 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 1351 gtccattcctctctcaccactgactgtaccca 1382
>ref|NM_125215.3| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT5G58300 mRNA, complete cds Length = 2664 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 1948 gtccattcctctctcaccactgactgtaccca 1917
>gb|AC118018.20| Mus musculus chromosome 17, clone RP23-458D20, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgtccaaatatgttgtgtgt 133 |||||||||||||||||||| Sbjct: 111987 tgtccaaatatgttgtgtgt 112006
>ref|NM_191704.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1971 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctc 400 ||||||| ||||||||||||| | ||||||||||| Sbjct: 1722 cagctccacgtcgaacacctccgaggtccactcctc 1687
>emb|AJ224982.1|ATH224982 Arabidopsis thaliana MAP3K epsilon gene Length = 10054 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tttgattgattcctttttat 24 |||||||||||||||||||| Sbjct: 10018 tttgattgattcctttttat 9999
>emb|AL590627.25| Human DNA sequence from clone RP13-467E5 on chromosome 9 Contains a pseudogene similar to part of SET translocation (myeloid leukemia-associated) (SET), the 5' end of the gene for euchromatic histone methyltransferase 1 (FLJ12879, KIAA1876) (Eu-HMTase1) and two CpG islands, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 132968 gactcctgctcctcctcgga 132949
>emb|AL357033.19| Human DNA sequence from clone RP11-93B14 on chromosome 20 Contains the SLC21A12 gene for solute carrier family 21 (organic anion transporter) member 12, the 5' end of the NTSR1 gene encoding the high affinity neurotensin receptor 1, three novel genes, the gene for a novel protein (FLJ32154) and four CpG islands, complete sequence Length = 114642 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 tctggtgcacgatacccgcc 583 |||||||||||||||||||| Sbjct: 72217 tctggtgcacgatacccgcc 72236
>ref|XM_785443.1| PREDICTED: Strongylocentrotus purpuratus similar to Midasin (MIDAS-containing protein) (LOC585623), partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcacgacctcagaggtgtct 275 |||||||||||||||||||| Sbjct: 307 tcacgacctcagaggtgtct 288
>gb|BC047504.1| Homo sapiens euchromatic histone-lysine N-methyltransferase 1, mRNA (cDNA clone MGC:50973 IMAGE:5298029), complete cds Length = 2721 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 1239 gactcctgctcctcctcgga 1220
>emb|AJ821839.1| Guillardia theta partial mRNA for light harvesting complex 8 (lhc8 gene) Length = 468 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gccggtgaggatctcaagga 504 |||||||||||||||||||| Sbjct: 222 gccggtgaggatctcaagga 203
>dbj|AB231799.1| Cyprinus carpio MYH emb2 mRNA for myosin heavy chain embryonic type 2, complete cds Length = 5975 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 cctgcagtagtgccaccatctcctcttc 343 ||||||| ||||||||||||| |||||| Sbjct: 2736 cctgcagcagtgccaccatcttctcttc 2709
>dbj|AK022941.1| Homo sapiens cDNA FLJ12879 fis, clone NT2RP2003857, weakly similar to MYOTROPHIN Length = 2656 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 1154 gactcctgctcctcctcgga 1135
>gb|AY083210.1| Homo sapiens euchromatic histone methyltransferase 1 mRNA, complete cds Length = 3804 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 1109 gactcctgctcctcctcgga 1090
>gb|AC022022.10| Homo sapiens chromosome 10 clone RP11-351O1, complete sequence Length = 183604 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 495 atctcaaggaaaagtactccaagc 518 |||||||||||||||||| ||||| Sbjct: 137719 atctcaaggaaaagtactgcaagc 137742
>ref|NM_024757.3| Homo sapiens euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA Length = 5067 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 1183 gactcctgctcctcctcgga 1164
>gb|AY065009.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 2373 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 1948 gtccattcctctctcaccactgactgtaccca 1917
>gb|DQ393577.1| Metarhizium anisopliae beta-tubulin mRNA, complete cds Length = 1661 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 atgtccgacttgaatgtggg 544 |||||||||||||||||||| Sbjct: 1450 atgtccgacttgaatgtggg 1469
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 621 aggtgttggaggggagtagt 640 |||||||||||||||||||| Sbjct: 208726 aggtgttggaggggagtagt 208707
>emb|BX829426.1|CNS09YQP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB13ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2311 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 1919 gtccattcctctctcaccactgactgtaccca 1888
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctggtcgtcggcgtgcccgatgac 179 ||||| |||||||||||||||||| Sbjct: 446397 ctggtggtcggcgtgcccgatgac 446374
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctc 400 ||||||| ||||||||||||| | ||||||||||| Sbjct: 16656 cagctccacgtcgaacacctccgaggtccactcctc 16621
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctc 400 ||||||| ||||||||||||| | ||||||||||| Sbjct: 113110 cagctccacgtcgaacacctccgaggtccactcctc 113075
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gcgctggtcgtcggcgtgcc 172 |||||||||||||||||||| Sbjct: 1329540 gcgctggtcgtcggcgtgcc 1329521
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 caccatctcctcttcggcgc 348 |||||||||||||||||||| Sbjct: 3541822 caccatctcctcttcggcgc 3541841
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tttgattgattcctttttat 24 |||||||||||||||||||| Sbjct: 64134 tttgattgattcctttttat 64153
>dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7 Length = 87090 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 47773 gtccattcctctctcaccactgactgtaccca 47742
>emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragment; clone MWG2041.rev Length = 367 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 374 gtcgaacacctctgccgtccactcctcc 401 |||||||||||| | ||||||||||||| Sbjct: 49 gtcgaacacctcggacgtccactcctcc 76
>dbj|AK107001.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C06, full insert sequence Length = 2270 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 365 cagctccgcgtcgaacacctctgccgtccactcctc 400 ||||||| ||||||||||||| | ||||||||||| Sbjct: 1829 cagctccacgtcgaacacctccgaggtccactcctc 1794
>emb|AJ325396.1|HSA325396 Homo sapiens genomic sequence surrounding NotI site, clone NB6-564 Length = 761 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 tctggtgcacgatacccgcc 583 |||||||||||||||||||| Sbjct: 190 tctggtgcacgatacccgcc 171
>gb|AC119978.7| Mus musculus chromosome 9, clone RP24-487D12, complete sequence Length = 177091 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agtgccaccatctcctcttc 343 |||||||||||||||||||| Sbjct: 80855 agtgccaccatctcctcttc 80874
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 gttgcgctggtcgtcggcgtgccc 173 ||||||||| |||||||||||||| Sbjct: 1683759 gttgcgctgatcgtcggcgtgccc 1683782 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 gcgctggtcgtcggcgtgcccgat 176 |||||||| ||||||||||||||| Sbjct: 576505 gcgctggtggtcggcgtgcccgat 576528
>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence Length = 193186 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 acacaccaccatcacccaca 458 |||||||||||||||||||| Sbjct: 78006 acacaccaccatcacccaca 77987
>gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromosome unknown, complete sequence Length = 231813 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 621 aggtgttggaggggagtagt 640 |||||||||||||||||||| Sbjct: 9218 aggtgttggaggggagtagt 9199
>emb|CT010457.7| Mouse DNA sequence from clone RP23-96M8 on chromosome 9, complete sequence Length = 259964 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agtgccaccatctcctcttc 343 |||||||||||||||||||| Sbjct: 144471 agtgccaccatctcctcttc 144490
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 cgcgtcgaacacctctgccg 390 |||||||||||||||||||| Sbjct: 3052804 cgcgtcgaacacctctgccg 3052823
>gb|U69634.1|HSU69634 Human neurotensin receptor gene, promoter region Length = 1515 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 tctggtgcacgatacccgcc 583 |||||||||||||||||||| Sbjct: 1177 tctggtgcacgatacccgcc 1196
>gb|BT001138.1| Arabidopsis thaliana At5g58299/At5g58299 mRNA, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 gtccactcctcccttaccactgactgtaccca 421 ||||| ||||| || ||||||||||||||||| Sbjct: 1739 gtccattcctctctcaccactgactgtaccca 1708
>dbj|AB028932.1| Homo sapiens mRNA for GLP1, complete cds Length = 2754 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 59 gactcctgctcctcctcgga 40
>emb|AL731734.13| Mouse DNA sequence from clone RP23-26C7 on chromosome 2, complete sequence Length = 88618 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 attcctttttataacaatta 32 |||||||||||||||||||| Sbjct: 75051 attcctttttataacaatta 75070
>dbj|AB058779.2| Homo sapiens mRNA for KIAA1876 protein, partial cds Length = 7842 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gactcctgctcctcctcgga 196 |||||||||||||||||||| Sbjct: 59 gactcctgctcctcctcgga 40 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,412,949 Number of Sequences: 3902068 Number of extensions: 5412949 Number of successful extensions: 117685 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116449 Number of HSP's gapped (non-prelim): 1231 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
