ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478168.1| Oryza sativa (japonica cultivar-group), mRNA 329 7e-87
2dbj|AK068288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 329 7e-87
3gb|AY106430.1| Zea mays PCO091376 mRNA sequence 216 7e-53
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on ch... 44 0.57
7emb|BX649442.7| Zebrafish DNA sequence from clone DKEY-265J8 in ... 44 0.57
8emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 i... 44 0.57
9gb|AC015917.30| Homo sapiens chromosome 17, clone CTD-2350C19, c... 44 0.57
10emb|CR749776.6| Zebrafish DNA sequence from clone CH211-206L17 i... 44 0.57
11ref|NM_001003360.2| Canis familiaris ATP-binding cassette, sub-f... 42 2.2
12gb|AY427779.1| Canis familiaris isolate P1117 ABCA4 mRNA, comple... 42 2.2
13gb|AY427778.1| Canis familiaris isolate AS23 ABCA4 mRNA, complet... 42 2.2
14gb|AY427777.1| Canis familiaris isolate AS22 ABCA4 mRNA, complet... 42 2.2
15emb|AJ784316.1| Canis familiaris mRNA for retinal-specific ATP-b... 42 2.2
16emb|AJ639836.1| Canis familiaris partial abca4 gene for RIM ABC ... 42 2.2
17gb|AC025028.21| Homo sapiens 3 BAC RP11-238M12 (Roswell Park Can... 42 2.2
18gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complet... 42 2.2
19gb|AC079399.5| Homo sapiens BAC clone RP11-414P19 from 4, comple... 42 2.2
20emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in l... 42 2.2
21emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in l... 42 2.2
22emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-8... 42 2.2
23emb|BX005113.4| Zebrafish DNA sequence from clone CH211-203B20, ... 42 2.2
24dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.2
25dbj|AP006115.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 2.2
26dbj|AP006095.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 2.2
27gb|BC054621.1| Danio rerio arachidonate 12-lipoxygenase, mRNA (c... 40 8.8
28ref|XM_463196.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
29gb|AY376688.1| Crinipellis perniciosa mitochondrion, complete ge... 40 8.8
30gb|AY741367.1| Human poliovirus 3 strain SUD0410601 capsid prote... 40 8.8
31gb|AY752710.1| Brassica oleracea var. gemmifera isolate ML10_33 ... 40 8.8
32gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 40 8.8
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.8
34gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome... 40 8.8
35ref|XM_758654.1| Theileria parva strain Muguga chromosome 4 hypo... 40 8.8
36gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 8.8
37emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chr... 40 8.8
38emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chr... 40 8.8
39emb|AL137019.6| Human DNA sequence from clone RP11-143P10 on chr... 40 8.8
40gb|AC163019.5| Mus musculus chromosome 19, clone RP24-290E5, com... 40 8.8
41emb|AJ293918.1|HPO293918 Human poliovirus type 3 complete genome... 40 8.8
42emb|BX537258.3| Mouse DNA sequence from clone RP23-152P13 on chr... 40 8.8
43emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in... 40 8.8
44emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on ch... 40 8.8
45gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 40 8.8
46gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, com... 40 8.8
47gb|AC079230.6| Homo sapiens BAC clone RP11-292F20 from 4, comple... 40 8.8
48gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 8.8
49ref|XM_685180.1| PREDICTED: Danio rerio similar to arachidonate ... 40 8.8
50gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome... 40 8.8
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
52ref|NM_199618.1| Danio rerio arachidonate 12-lipoxygenase (alox1... 40 8.8
53emb|BX248127.9| Zebrafish DNA sequence from clone CH211-117N7, c... 40 8.8
54gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, comple... 40 8.8
55gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genom... 40 8.8
56gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 8.8
57gb|AC009363.4|AC009363 Homo sapiens chromosome 14 clone CTD-2317... 40 8.8
58gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E... 40 8.8
59gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, compl... 40 8.8
60dbj|AK072419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
61dbj|AK071474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
62emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-7... 40 8.8
63emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-2... 40 8.8
64emb|BX511172.6| Zebrafish DNA sequence from clone DKEY-13K23 in ... 40 8.8
65gb|AY104750.1| Zea mays PCO077049 mRNA sequence 40 8.8
66gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 8.8
67gb|AF016898.1|AF016898 Homo sapiens B-ATF gene, complete cds 40 8.8
68emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in l... 40 8.8
69emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, co... 40 8.8
70emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on ch... 40 8.8
71emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chrom... 40 8.8
72gb|AC090692.9| Homo sapiens chromosome 11, clone RP11-698N11, co... 40 8.8 
>ref|XM_478168.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1634

 Score =  329 bits (166), Expect = 7e-87
 Identities = 214/230 (93%)
 Strand = Plus / Minus

                                                                       
Query: 405 gtaaaattgaagttgccagagaacatagcttctttatctgtcaatgatagacaagttgcc 464
           ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 981 gtaaatttgaagttgccagagaacatagcttctttatctgtcagtgataggcaagttgcc 922

                                                                       
Query: 465 tccctccgagtatatcttgccaatgcctggacagcaggggtagcagctgcatccataggc 524
           ||||||||||| || | |||||||||||||| |||||||  ||| ||||||||||||| |
Sbjct: 921 tccctccgagtgtaccgtgccaatgcctggatagcagggacagctgctgcatccatagcc 862

                                                                       
Query: 525 tctgaaccttcgtcagcatacacattcctccagatgacatttacaagatcatcctggctt 584
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 861 tctgaaccttcgtcggcatacacattcctccagatgacatttacaagatcatcctgacgt 802

                                                             
Query: 585 gcttctgggcttattgcagtatcatatttcacaatgttcccatagaatat 634
           |||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 801 gcttctgggcttattgcagagtcatatttcacaatgttcccatagaatat 752
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>dbj|AK068288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149P03, full
           insert sequence
          Length = 1634

 Score =  329 bits (166), Expect = 7e-87
 Identities = 214/230 (93%)
 Strand = Plus / Minus

                                                                       
Query: 405 gtaaaattgaagttgccagagaacatagcttctttatctgtcaatgatagacaagttgcc 464
           ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 981 gtaaatttgaagttgccagagaacatagcttctttatctgtcagtgataggcaagttgcc 922

                                                                       
Query: 465 tccctccgagtatatcttgccaatgcctggacagcaggggtagcagctgcatccataggc 524
           ||||||||||| || | |||||||||||||| |||||||  ||| ||||||||||||| |
Sbjct: 921 tccctccgagtgtaccgtgccaatgcctggatagcagggacagctgctgcatccatagcc 862

                                                                       
Query: 525 tctgaaccttcgtcagcatacacattcctccagatgacatttacaagatcatcctggctt 584
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 861 tctgaaccttcgtcggcatacacattcctccagatgacatttacaagatcatcctgacgt 802

                                                             
Query: 585 gcttctgggcttattgcagtatcatatttcacaatgttcccatagaatat 634
           |||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 801 gcttctgggcttattgcagagtcatatttcacaatgttcccatagaatat 752
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>gb|AY106430.1| Zea mays PCO091376 mRNA sequence
          Length = 676

 Score =  216 bits (109), Expect = 7e-53
 Identities = 206/237 (86%), Gaps = 1/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 ttgaagttgccagagaacatagcttctt-tatctgtcaatgatagacaagttgcctccct 469
           |||||||| || ||||||||||  |||| | || ||||||||||| ||||||||||||||
Sbjct: 435 ttgaagttccccgagaacatagaatcttctgtcagtcaatgataggcaagttgcctccct 376

                                                                       
Query: 470 ccgagtatatcttgccaatgcctggacagcaggggtagcagctgcatccataggctctga 529
            || || |||||||||||||||||||||||||||| ||||||  |||||||||  |||||
Sbjct: 375 tcgtgtgtatcttgccaatgcctggacagcaggggcagcagcaacatccatagcttctga 316

                                                                       
Query: 530 accttcgtcagcatacacattcctccagatgacatttacaagatcatcctggcttgcttc 589
           |||||| |||||||| | ||| |||||||||||||||||||||||||| ||    || ||
Sbjct: 315 accttcctcagcataaatatttctccagatgacatttacaagatcatcttgatgagcctc 256

                                                                    
Query: 590 tgggcttattgcagtatcatatttcacaatgttcccatagaatattttttctagctc 646
           ||||||||| |||| |||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 255 tgggcttatcgcagcatcatacttcacaatgtttccatagaatattttctctagctc 199
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  135 bits (68), Expect = 2e-28
 Identities = 80/84 (95%)
 Strand = Plus / Plus

                                                                            
Query: 551      cctccagatgacatttacaagatcatcctggcttgcttctgggcttattgcagtatcata 610
                |||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||
Sbjct: 18171182 cctccagatgacatttacaagatcatcctgacgtgcttctgggcttattgcagagtcata 18171241

                                        
Query: 611      tttcacaatgttcccatagaatat 634
                ||||||||||||||||||||||||
Sbjct: 18171242 tttcacaatgttcccatagaatat 18171265



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                            
Query: 488      tgcctggacagcaggggtagcagctgcatccataggctctgaaccttcgtcagcatacac 547
                |||||||| |||||||  ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 18169966 tgcctggatagcagggacagctgctgcatccatagcctctgaaccttcgtcggcatacac 18170025

                      
Query: 548      attcct 553
                ||||||
Sbjct: 18170026 attcct 18170031



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                        
Query: 405      gtaaaattgaagttgccagagaacatagcttctttatctg 444
                ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18169695 gtaaatttgaagttgccagagaacatagcttctttatctg 18169734



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 442      ctgtcaatgatagacaagttgcctccctccgagtatatcttgccaatgcctg 493
                |||||| |||||| |||||||||||||||||||| || | ||||||||||||
Sbjct: 18169827 ctgtcagtgataggcaagttgcctccctccgagtgtaccgtgccaatgcctg 18169878
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0477A12
          Length = 138141

 Score =  135 bits (68), Expect = 2e-28
 Identities = 80/84 (95%)
 Strand = Plus / Plus

                                                                          
Query: 551    cctccagatgacatttacaagatcatcctggcttgcttctgggcttattgcagtatcata 610
              |||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||
Sbjct: 106488 cctccagatgacatttacaagatcatcctgacgtgcttctgggcttattgcagagtcata 106547

                                      
Query: 611    tttcacaatgttcccatagaatat 634
              ||||||||||||||||||||||||
Sbjct: 106548 tttcacaatgttcccatagaatat 106571



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                          
Query: 488    tgcctggacagcaggggtagcagctgcatccataggctctgaaccttcgtcagcatacac 547
              |||||||| |||||||  ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 105272 tgcctggatagcagggacagctgctgcatccatagcctctgaaccttcgtcggcatacac 105331

                    
Query: 548    attcct 553
              ||||||
Sbjct: 105332 attcct 105337



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                      
Query: 405    gtaaaattgaagttgccagagaacatagcttctttatctg 444
              ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 105001 gtaaatttgaagttgccagagaacatagcttctttatctg 105040



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 442    ctgtcaatgatagacaagttgcctccctccgagtatatcttgccaatgcctg 493
              |||||| |||||| |||||||||||||||||||| || | ||||||||||||
Sbjct: 105133 ctgtcagtgataggcaagttgcctccctccgagtgtaccgtgccaatgcctg 105184
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>emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on chromosome 1, complete
             sequence
          Length = 176194

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 489   gcctggacagcaggggtagcag 510
             ||||||||||||||||||||||
Sbjct: 72175 gcctggacagcaggggtagcag 72196
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>emb|BX649442.7| Zebrafish DNA sequence from clone DKEY-265J8 in linkage group 9, complete
              sequence
          Length = 176456

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 257    tgaaaaaatttgtattatttgtaatg 282
              ||||||||||||||||||||| ||||
Sbjct: 115852 tgaaaaaatttgtattatttgaaatg 115827
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>emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 in linkage group 9,
              complete sequence
          Length = 221265

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 257    tgaaaaaatttgtattatttgtaatg 282
              ||||||||||||||||||||| ||||
Sbjct: 101659 tgaaaaaatttgtattatttgaaatg 101684
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>gb|AC015917.30| Homo sapiens chromosome 17, clone CTD-2350C19, complete sequence
          Length = 123794

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 245   ataaataaatactgaaaaaatt 266
             ||||||||||||||||||||||
Sbjct: 55322 ataaataaatactgaaaaaatt 55301
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>emb|CR749776.6| Zebrafish DNA sequence from clone CH211-206L17 in linkage group 9,
           complete sequence
          Length = 154131

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 257 tgaaaaaatttgtattatttgtaatg 282
           ||||||||||||||||||||| ||||
Sbjct: 596 tgaaaaaatttgtattatttgaaatg 571
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>ref|NM_001003360.2| Canis familiaris ATP-binding cassette, sub-family A (ABC1), member 4
            (ABCA4), mRNA
          Length = 7259

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  gggcagcccatcaatgcaatg 161
            |||||||||||||||||||||
Sbjct: 6302 gggcagcccatcaatgcaatg 6282
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>gb|AY427779.1| Canis familiaris isolate P1117 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  gggcagcccatcaatgcaatg 161
            |||||||||||||||||||||
Sbjct: 6254 gggcagcccatcaatgcaatg 6234
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>gb|AY427778.1| Canis familiaris isolate AS23 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  gggcagcccatcaatgcaatg 161
            |||||||||||||||||||||
Sbjct: 6254 gggcagcccatcaatgcaatg 6234
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>gb|AY427777.1| Canis familiaris isolate AS22 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  gggcagcccatcaatgcaatg 161
            |||||||||||||||||||||
Sbjct: 6254 gggcagcccatcaatgcaatg 6234
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>emb|AJ784316.1| Canis familiaris mRNA for retinal-specific ATP-binding cassette
            transporter (abcr gene)
          Length = 7259

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  gggcagcccatcaatgcaatg 161
            |||||||||||||||||||||
Sbjct: 6302 gggcagcccatcaatgcaatg 6282
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>emb|AJ639836.1| Canis familiaris partial abca4 gene for RIM ABC transporter, exons
           45-47
          Length = 1219

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 gggcagcccatcaatgcaatg 161
           |||||||||||||||||||||
Sbjct: 119 gggcagcccatcaatgcaatg 99
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>gb|AC025028.21| Homo sapiens 3 BAC RP11-238M12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145969

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 252   aatactgaaaaaatttgtattattt 276
             |||| ||||||||||||||||||||
Sbjct: 92904 aatattgaaaaaatttgtattattt 92880
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>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence
          Length = 148673

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   tactgaaaaaatttgtattat 274
             |||||||||||||||||||||
Sbjct: 36943 tactgaaaaaatttgtattat 36923
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>gb|AC079399.5| Homo sapiens BAC clone RP11-414P19 from 4, complete sequence
          Length = 169035

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 240    tgtccataaataaatactgaaaaaa 264
              ||||||||||||| |||||||||||
Sbjct: 121891 tgtccataaataattactgaaaaaa 121915
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>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2,
             complete sequence
          Length = 146298

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ataaataaatactgaaaaaat 265
             |||||||||||||||||||||
Sbjct: 42412 ataaataaatactgaaaaaat 42392
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>emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in linkage group 18,
             complete sequence
          Length = 171015

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   agcccatcaatgcaatgctca 165
             |||||||||||||||||||||
Sbjct: 85986 agcccatcaatgcaatgctca 86006
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>emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-840I19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   aaaatttgtattatttgtaat 281
             |||||||||||||||||||||
Sbjct: 12715 aaaatttgtattatttgtaat 12735
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>emb|BX005113.4| Zebrafish DNA sequence from clone CH211-203B20, complete sequence
          Length = 191785

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 256   ctgaaaaaatttgtattattt 276
             |||||||||||||||||||||
Sbjct: 75910 ctgaaaaaatttgtattattt 75930
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>dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02F07, TM0101,
              complete sequence
          Length = 114487

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 250    taaatactgaaaaaatttgtattat 274
              |||| ||||||||||||||||||||
Sbjct: 112627 taaaaactgaaaaaatttgtattat 112603
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>dbj|AP006115.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198b,
             complete sequence
          Length = 65307

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 250   taaatactgaaaaaatttgtattat 274
             |||| ||||||||||||||||||||
Sbjct: 23465 taaaaactgaaaaaatttgtattat 23489
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>dbj|AP006095.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173a,
             complete sequence
          Length = 30060

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 250   taaatactgaaaaaatttgtattat 274
             |||| ||||||||||||||||||||
Sbjct: 27400 taaaaactgaaaaaatttgtattat 27424
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>gb|BC054621.1| Danio rerio arachidonate 12-lipoxygenase, mRNA (cDNA clone MGC:64120
            IMAGE:6795410), complete cds
          Length = 3567

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcaaccaggaaaatgtttcc 119
            ||||||||||||||||||||
Sbjct: 1071 tcaaccaggaaaatgtttcc 1052
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>ref|XM_463196.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 aaattgaagttgccagagaa 427
           ||||||||||||||||||||
Sbjct: 853 aaattgaagttgccagagaa 872
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>gb|AY376688.1| Crinipellis perniciosa mitochondrion, complete genome
          Length = 109103

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  atttgtaatgatgataggactttc 296
            ||||||||| ||||||||||||||
Sbjct: 2365 atttgtaattatgataggactttc 2342
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>gb|AY741367.1| Human poliovirus 3 strain SUD0410601 capsid protein (VP1) gene,
           partial cds
          Length = 900

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 ttggcaaaaccgtcgtaaaa 410
           ||||||||||||||||||||
Sbjct: 635 ttggcaaaaccgtcgtaaaa 616
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>gb|AY752710.1| Brassica oleracea var. gemmifera isolate ML10_33 rpl16 gene,
           partial sequence; chloroplast
          Length = 1202

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 atttgtaatgatgataggac 292
           ||||||||||||||||||||
Sbjct: 417 atttgtaatgatgataggac 398
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>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   aaaaatttgtattatttgta 279
             ||||||||||||||||||||
Sbjct: 72715 aaaaatttgtattatttgta 72734
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 408      aaattgaagttgccagagaa 427
                ||||||||||||||||||||
Sbjct: 23354173 aaattgaagttgccagagaa 23354154
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>gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome 16, complete sequence
          Length = 184951

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aagcattcaaccaggaaaat 113
              ||||||||||||||||||||
Sbjct: 170170 aagcattcaaccaggaaaat 170151
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>ref|XM_758654.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0112) partial mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  aaatttgtattatttgtaat 281
            ||||||||||||||||||||
Sbjct: 1064 aaatttgtattatttgtaat 1045
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>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ataaataaatactgaaaaaa 264
              ||||||||||||||||||||
Sbjct: 185123 ataaataaatactgaaaaaa 185142
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>emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chromosome 9 Contains the
             5' end of a malic enzyme pseudogene, complete sequence
          Length = 60532

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   aaatttgtattatttgtaat 281
             ||||||||||||||||||||
Sbjct: 17262 aaatttgtattatttgtaat 17281
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>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13,
             complete sequence
          Length = 106073

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    attcaaccaggaaaatgttt 117
             ||||||||||||||||||||
Sbjct: 16959 attcaaccaggaaaatgttt 16940
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>emb|AL137019.6| Human DNA sequence from clone RP11-143P10 on chromosome 9q31.3-33.1,
              complete sequence
          Length = 181542

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ataaataaatactgaaaaaa 264
              ||||||||||||||||||||
Sbjct: 156177 ataaataaatactgaaaaaa 156196
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>gb|AC163019.5| Mus musculus chromosome 19, clone RP24-290E5, complete sequence
          Length = 152969

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ataaataaatactgaaaaaa 264
              ||||||||||||||||||||
Sbjct: 149450 ataaataaatactgaaaaaa 149431
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>emb|AJ293918.1|HPO293918 Human poliovirus type 3 complete genome, live-attenuated strain
            USOL-D-bac, genomic RNA
          Length = 7436

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  ttggcaaaaccgtcgtaaaa 410
            ||||||||||||||||||||
Sbjct: 3116 ttggcaaaaccgtcgtaaaa 3097
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>emb|BX537258.3| Mouse DNA sequence from clone RP23-152P13 on chromosome 4 Contains a
              eukaryotic translation initiation factor 4E (Eif4e)
              pseudogene and a eukaryotic translation initiation factor
              4A (Eif4a) pseudogene, complete sequence
          Length = 188776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ataaataaatactgaaaaaa 264
              ||||||||||||||||||||
Sbjct: 139930 ataaataaatactgaaaaaa 139949
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>emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in linkage group 20
             Contains the 5' end of the gene for a novel protein
             similar to vertebrate ring finger protein 144 (RNF144),
             the gene for a novel radical SAM superfamily protein, the
             gene for a novel protein similar to mouse thymidylate
             kinase family LPS-inducible member (Tyki) and a CpG
             island, complete sequence
          Length = 166885

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   aaataaatactgaaaaaatt 266
             ||||||||||||||||||||
Sbjct: 75794 aaataaatactgaaaaaatt 75813
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>emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on chromosome X, complete
             sequence
          Length = 171883

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 245   ataaataaatactgaaaaaatttgtatt 272
             ||||||||||| |||| |||||||||||
Sbjct: 69933 ataaataaataatgaataaatttgtatt 69960



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 245   ataaataaatactgaaaaaatttgtatt 272
             ||||||||||| |||| |||||||||||
Sbjct: 28457 ataaataaataatgaataaatttgtatt 28430
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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gtcaccgacattgtgaatga 42
             ||||||||||||||||||||
Sbjct: 10350 gtcaccgacattgtgaatga 10331
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>gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, complete sequence
          Length = 179104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tgctcacacacgataaacat 179
              ||||||||||||||||||||
Sbjct: 103705 tgctcacacacgataaacat 103724
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>gb|AC079230.6| Homo sapiens BAC clone RP11-292F20 from 4, complete sequence
          Length = 163545

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    cattcctccagatgacattt 566
              ||||||||||||||||||||
Sbjct: 104282 cattcctccagatgacattt 104301
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>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ataaataaatactgaaaaaa 264
             ||||||||||||||||||||
Sbjct: 92834 ataaataaatactgaaaaaa 92815
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>ref|XM_685180.1| PREDICTED: Danio rerio similar to arachidonate 12-lipoxygenase
            (LOC573125), mRNA
          Length = 2201

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcaaccaggaaaatgtttcc 119
            ||||||||||||||||||||
Sbjct: 1330 tcaaccaggaaaatgtttcc 1311



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcaaccaggaaaatgtttcc 119
            ||||||||||||||||||||
Sbjct: 1090 tcaaccaggaaaatgtttcc 1071
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>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete sequence
          Length = 203908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    tgaagttgccagagaacata 431
              ||||||||||||||||||||
Sbjct: 145970 tgaagttgccagagaacata 145989
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 408      aaattgaagttgccagagaa 427
                ||||||||||||||||||||
Sbjct: 23347201 aaattgaagttgccagagaa 23347182
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>ref|NM_199618.1| Danio rerio arachidonate 12-lipoxygenase (alox12), mRNA
          Length = 3567

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcaaccaggaaaatgtttcc 119
            ||||||||||||||||||||
Sbjct: 1071 tcaaccaggaaaatgtttcc 1052
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>emb|BX248127.9| Zebrafish DNA sequence from clone CH211-117N7, complete sequence
          Length = 173163

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    ccataaataaatactgaaaa 262
              ||||||||||||||||||||
Sbjct: 162343 ccataaataaatactgaaaa 162362
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>gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, complete sequence
          Length = 171468

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    agccaccaaaatggcctgaa 228
              ||||||||||||||||||||
Sbjct: 132952 agccaccaaaatggcctgaa 132971
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>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete
             sequence
          Length = 129647

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   aaattgaagttgccagagaa 427
             ||||||||||||||||||||
Sbjct: 36829 aaattgaagttgccagagaa 36810
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>gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone rp23-85a8, complete
             sequence
          Length = 236834

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tccatatcagcaatgaaaat 70
             ||||||||||||||||||||
Sbjct: 53071 tccatatcagcaatgaaaat 53052
to top
>gb|AC009363.4|AC009363 Homo sapiens chromosome 14 clone CTD-2317F5 map 14q24.3, complete
             sequence
          Length = 82707

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   caaccaggaaaatgtttcca 120
             ||||||||||||||||||||
Sbjct: 78458 caaccaggaaaatgtttcca 78439
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>gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E23 map 14q24.3, complete
             sequence
          Length = 192389

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   caaccaggaaaatgtttcca 120
             ||||||||||||||||||||
Sbjct: 34395 caaccaggaaaatgtttcca 34376
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>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence
          Length = 163687

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aagcattcaaccaggaaaat 113
             ||||||||||||||||||||
Sbjct: 88549 aagcattcaaccaggaaaat 88530
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>dbj|AK072419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A08, full
           insert sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 aaattgaagttgccagagaa 427
           ||||||||||||||||||||
Sbjct: 382 aaattgaagttgccagagaa 401
to top
>dbj|AK071474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B21, full
           insert sequence
          Length = 2066

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 aaattgaagttgccagagaa 427
           ||||||||||||||||||||
Sbjct: 922 aaattgaagttgccagagaa 941
to top
>emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-779M2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200109

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    aaatgtttccaccgtgtactctat 133
              ||||||||||||| ||||||||||
Sbjct: 187646 aaatgtttccaccttgtactctat 187623
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>emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-254B15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    aaatgtttccaccgtgtactctat 133
              ||||||||||||| ||||||||||
Sbjct: 110045 aaatgtttccaccttgtactctat 110068
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>emb|BX511172.6| Zebrafish DNA sequence from clone DKEY-13K23 in linkage group 4, complete
              sequence
          Length = 249278

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    aatgatgataggactttcag 298
              ||||||||||||||||||||
Sbjct: 233961 aatgatgataggactttcag 233942
to top
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 496  cagcaggggtagcagctgcatcca 519
            |||||||| |||||||||||||||
Sbjct: 2541 cagcagggatagcagctgcatcca 2518
to top
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccgggcttgggacggttggc 395
               ||||||||||||||||||||
Sbjct: 1293285 ccgggcttgggacggttggc 1293266
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>gb|AF016898.1|AF016898 Homo sapiens B-ATF gene, complete cds
          Length = 17004

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  caaccaggaaaatgtttcca 120
            ||||||||||||||||||||
Sbjct: 2442 caaccaggaaaatgtttcca 2423
to top
>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete
              sequence
          Length = 217582

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tcaaccaggaaaatgtttcc 119
              ||||||||||||||||||||
Sbjct: 190169 tcaaccaggaaaatgtttcc 190150
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>emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, complete sequence
          Length = 232537

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 560   gacatttacaagatcatcctggct 583
             ||||||||||||| ||||||||||
Sbjct: 12518 gacatttacaagaccatcctggct 12541
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>emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on chromosome 11, complete
             sequence
          Length = 147376

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   aaataaatactgaaaaaatt 266
             ||||||||||||||||||||
Sbjct: 54848 aaataaatactgaaaaaatt 54867
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>emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chromosome 4, complete
             sequence
          Length = 206407

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 628   agaatattttttctagctct 647
             ||||||||||||||||||||
Sbjct: 89136 agaatattttttctagctct 89117
to top
>gb|AC090692.9| Homo sapiens chromosome 11, clone RP11-698N11, complete sequence
          Length = 179494

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     attcaaccaggaaaatgttt 117
              ||||||||||||||||||||
Sbjct: 167300 attcaaccaggaaaatgttt 167281


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,868,313
Number of Sequences: 3902068
Number of extensions: 7868313
Number of successful extensions: 147823
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147556
Number of HSP's gapped (non-prelim): 266
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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