ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 pr... 30 5.3

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 384  NRHGDGWPHRDCQLGFDFHHQNAVCGIQVCNKY 482
            N H  GW   DC L FD   QN    +Q C +Y
Sbjct: 1466 NNHACGWDGGDCSLNFDDPWQNCSAALQ-CWRY 1497


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,319,826
Number of Sequences: 219361
Number of extensions: 1505212
Number of successful extensions: 3146
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3144
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top