ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30c18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507073.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.31 mRNA Length = 1456 Score = 309 bits (156), Expect = 6e-81 Identities = 207/224 (92%) Strand = Plus / Minus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 418 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1023 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctggcgattgagatcctta 964 Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||| ||||| ||||| |||||||| ||||||||| ||||||||||| | ||||| Sbjct: 963 gccttatctgcatacattcttgtgtcagaagtcaacctagttgacatttcagtgacctgg 904 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 903 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 844 Query: 539 tcatagagctcatcgttcaatttcgcaatgttcctctgggttct 582 |||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 843 tcatagagctcatcattcaatttcgcaagattcctctgggttct 800 Score = 61.9 bits (31), Expect = 2e-06 Identities = 87/104 (83%), Gaps = 5/104 (4%) Strand = Plus / Minus Query: 56 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 115 ||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| |||| Sbjct: 1341 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 1287 Query: 116 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 159 || ||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 1286 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 1243 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 264 ||||||||||||||| ||||||||||||||||| |||| | ||||| || ||||||||| Sbjct: 1197 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 1139 Query: 265 aat 267 ||| Sbjct: 1138 aat 1136
>ref|XM_469942.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1228 Score = 309 bits (156), Expect = 6e-81 Identities = 207/224 (92%) Strand = Plus / Minus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 418 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 795 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctggcgattgagatcctta 736 Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||| ||||| ||||| |||||||| ||||||||| ||||||||||| | ||||| Sbjct: 735 gccttatctgcatacattcttgtgtcagaagtcaacctagttgacatttcagtgacctgg 676 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 675 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 616 Query: 539 tcatagagctcatcgttcaatttcgcaatgttcctctgggttct 582 |||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 615 tcatagagctcatcattcaatttcgcaagattcctctgggttct 572 Score = 61.9 bits (31), Expect = 2e-06 Identities = 87/104 (83%), Gaps = 5/104 (4%) Strand = Plus / Minus Query: 56 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 115 ||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| |||| Sbjct: 1113 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 1059 Query: 116 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 159 || ||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 1058 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 1015 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 264 ||||||||||||||| ||||||||||||||||| |||| | ||||| || ||||||||| Sbjct: 969 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 911 Query: 265 aat 267 ||| Sbjct: 910 aat 908
>dbj|AK064781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B09, full insert sequence Length = 1842 Score = 283 bits (143), Expect = 3e-73 Identities = 203/223 (91%) Strand = Plus / Minus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 418 |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1423 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctggcgattgagatcctta 1364 Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||| ||||||||||| |||||||| |||| |||| |||||||||| | ||||| Sbjct: 1363 gccttatctgcatagattcttgtgtcagaagtcagcctagctgacatttcagtgacctgg 1304 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1303 tctagcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacc 1244 Query: 539 tcatagagctcatcgttcaatttcgcaatgttcctctgggttc 581 |||||||||||||| || |||||||||| ||||||||||||| Sbjct: 1243 tcatagagctcatcatttaatttcgcaagattcctctgggttc 1201 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 260 ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| Sbjct: 1608 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 1553 Score = 48.1 bits (24), Expect = 0.033 Identities = 49/57 (85%), Gaps = 4/57 (7%) Strand = Plus / Minus Query: 77 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 133 |||||||||||||||||||| || ||||||| ||| |||||||||||| ||||| Sbjct: 1739 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 1687
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 161 bits (81), Expect = 3e-36 Identities = 96/101 (95%) Strand = Plus / Minus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 135081 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 135022 Query: 542 tagagctcatcgttcaatttcgcaatgttcctctgggttct 582 ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 135021 tagagctcatcattcaatttcgcaagattcctctgggttct 134981 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 ||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| Sbjct: 135515 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 135456 Query: 459 ttgacatttca 469 ||||||||||| Sbjct: 135455 ttgacatttca 135445 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 402 |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 136195 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 136152 Score = 61.9 bits (31), Expect = 2e-06 Identities = 87/104 (83%), Gaps = 5/104 (4%) Strand = Plus / Minus Query: 56 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 115 ||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| |||| Sbjct: 136513 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 136459 Query: 116 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 159 || ||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 136458 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 136415 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 264 ||||||||||||||| ||||||||||||||||| |||| | ||||| || ||||||||| Sbjct: 136369 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 136311 Query: 265 aat 267 ||| Sbjct: 136310 aat 136308
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 3e-36 Identities = 96/101 (95%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 32608826 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 32608885 Query: 542 tagagctcatcgttcaatttcgcaatgttcctctgggttct 582 ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 32608886 tagagctcatcattcaatttcgcaagattcctctgggttct 32608926 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 ||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| Sbjct: 32608392 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32608451 Query: 459 ttgacatttca 469 ||||||||||| Sbjct: 32608452 ttgacatttca 32608462 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 402 |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 32607712 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 32607755 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 264 ||||||||||||||| ||||||||||||||||| |||| | ||||| || ||||||||| Sbjct: 32607538 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 32607596 Query: 265 aat 267 ||| Sbjct: 32607597 aat 32607599 Score = 61.9 bits (31), Expect = 2e-06 Identities = 87/104 (83%), Gaps = 5/104 (4%) Strand = Plus / Plus Query: 56 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 115 ||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| |||| Sbjct: 32607394 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 32607448 Query: 116 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 159 || ||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 32607449 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 32607492
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 3e-36 Identities = 96/101 (95%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 32699336 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 32699395 Query: 542 tagagctcatcgttcaatttcgcaatgttcctctgggttct 582 ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 32699396 tagagctcatcattcaatttcgcaagattcctctgggttct 32699436 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 ||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| Sbjct: 32698902 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32698961 Query: 459 ttgacatttca 469 ||||||||||| Sbjct: 32698962 ttgacatttca 32698972 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 402 |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 32698222 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 32698265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 264 ||||||||||||||| ||||||||||||||||| |||| | ||||| || ||||||||| Sbjct: 32698048 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 32698106 Query: 265 aat 267 ||| Sbjct: 32698107 aat 32698109 Score = 61.9 bits (31), Expect = 2e-06 Identities = 87/104 (83%), Gaps = 5/104 (4%) Strand = Plus / Plus Query: 56 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 115 ||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| |||| Sbjct: 32697904 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 32697958 Query: 116 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 159 || ||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 32697959 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 32698002
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 157 bits (79), Expect = 5e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 5024675 agcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacctca 5024734 Query: 542 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatc 588 ||||||||||| || |||||||||| |||||||||||||| ||||| Sbjct: 5024735 tagagctcatcatttaatttcgcaagattcctctgggttctagtatc 5024781 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| |||| Sbjct: 5024304 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 5024363 Query: 459 ttgacatttca 469 ||||||||||| Sbjct: 5024364 ttgacatttca 5024374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 260 ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| Sbjct: 5023469 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 5023524 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 402 |||||||| |||||||| ||||||||||||||||| |||||||| Sbjct: 5023654 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctg 5023697 Score = 48.1 bits (24), Expect = 0.033 Identities = 49/57 (85%), Gaps = 4/57 (7%) Strand = Plus / Plus Query: 77 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 133 |||||||||||||||||||| || ||||||| ||| |||||||||||| ||||| Sbjct: 5023338 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 5023390 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 cctacttgacatttcactaa 473 |||||||||||||||||||| Sbjct: 16671722 cctacttgacatttcactaa 16671741
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 157 bits (79), Expect = 5e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 66789 agcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacctca 66848 Query: 542 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatc 588 ||||||||||| || |||||||||| |||||||||||||| ||||| Sbjct: 66849 tagagctcatcatttaatttcgcaagattcctctgggttctagtatc 66895 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| |||| Sbjct: 66418 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 66477 Query: 459 ttgacatttca 469 ||||||||||| Sbjct: 66478 ttgacatttca 66488 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 205 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 260 ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| Sbjct: 65583 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 65638 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 359 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 402 |||||||| |||||||| ||||||||||||||||| |||||||| Sbjct: 65768 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctg 65811 Score = 48.1 bits (24), Expect = 0.033 Identities = 49/57 (85%), Gaps = 4/57 (7%) Strand = Plus / Plus Query: 77 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 133 |||||||||||||||||||| || ||||||| ||| |||||||||||| ||||| Sbjct: 65452 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 65504
>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence Length = 144792 Score = 109 bits (55), Expect = 1e-20 Identities = 85/95 (89%) Strand = Plus / Plus Query: 494 acaccaagaacttcttgaacattgcgagtcatgatttgatgcacctcatagagctcatcg 553 ||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||| Sbjct: 116258 acaccaagaacctcttgaacattgcgagccataatttgatgcacctcatagagttcatcg 116317 Query: 554 ttcaatttcgcaatgttcctctgggttctggtatc 588 |||||||| || | ||| ||||| ||||| ||||| Sbjct: 116318 ttcaattttgcgaggtttctctgagttcttgtatc 116352
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 476 tgatcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgc 535 ||||| || |||||||| ||||| ||||||||||||| |||||||||||| || || ||| Sbjct: 7439879 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 7439938 Query: 536 acctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatc 588 |||||||| |||||||| ||||| || || | |||||| |||||||||||||| Sbjct: 7439939 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatc 7439991 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 |||| |||||||||||||| ||||| || ||||| ||||| || ||||| |||||||| Sbjct: 7439299 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 7439358 Query: 459 ttgacatttcactaacct 476 | ||||||||||| |||| Sbjct: 7439359 tggacatttcactcacct 7439376 Score = 46.1 bits (23), Expect = 0.13 Identities = 71/87 (81%) Strand = Plus / Plus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | || ||||| |||||||| Sbjct: 7438573 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 7438632 Query: 376 gggggcatacttccgaatgaaggcctg 402 |||||||||| ||||| | |||||| Sbjct: 7438633 aagggcatacttgcgaataagggcctg 7438659 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/60 (85%), Gaps = 2/60 (3%) Strand = Plus / Plus Query: 208 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 267 |||||||||||| ||||||| |||||| ||| |||| |||||||| |||| ||||||| Sbjct: 7438449 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 7438506
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 476 tgatcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgc 535 ||||| || |||||||| ||||| ||||||||||||| |||||||||||| || || ||| Sbjct: 100907 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 100966 Query: 536 acctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatc 588 |||||||| |||||||| ||||| || || | |||||| |||||||||||||| Sbjct: 100967 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatc 101019 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 399 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 458 |||| |||||||||||||| ||||| || ||||| ||||| || ||||| |||||||| Sbjct: 100327 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 100386 Query: 459 ttgacatttcactaacct 476 | ||||||||||| |||| Sbjct: 100387 tggacatttcactcacct 100404 Score = 46.1 bits (23), Expect = 0.13 Identities = 71/87 (81%) Strand = Plus / Plus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | || ||||| |||||||| Sbjct: 99601 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 99660 Query: 376 gggggcatacttccgaatgaaggcctg 402 |||||||||| ||||| | |||||| Sbjct: 99661 aagggcatacttgcgaataagggcctg 99687 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/60 (85%), Gaps = 2/60 (3%) Strand = Plus / Plus Query: 208 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 267 |||||||||||| ||||||| |||||| ||| |||| |||||||| |||| ||||||| Sbjct: 99477 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 99534
>ref|NM_188651.1| Oryza sativa (japonica cultivar-group), Ozsa8254 predicted mRNA Length = 642 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | || ||||| |||||||| Sbjct: 642 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 583 Query: 376 gggggcatacttccgaatgaaggcctggcgattgagatcctttgccttatcagcatagat 435 |||||||||| ||||| | |||||| |||||||||||||| ||||| || ||||| || Sbjct: 582 aagggcatacttgcgaataagggcctgacgattgagatccttcgccttctccgcataaat 523 Query: 436 tctcgtgtcagatgtcaacctacttgacatttcactaacct 476 ||| || ||||| |||||||| | ||||||||||| |||| Sbjct: 522 tctagtatcagagatcaacctattggacatttcactcacct 482 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 494 acaccaagaacttcttgaacattgcgagtcatgatttgatgcacctcatagagctcatcg 553 ||||| ||||||||||||| |||||||||||| || || ||||||||||| |||||||| Sbjct: 479 acaccgagaacttcttgaaaattgcgagtcataatctggtgcacctcataaagctcatca 420 Query: 554 ttcaatttcgcaatgttcctctgggttctggtatc 588 ||||| || || | |||||| |||||||||||||| Sbjct: 419 ttcaacttggccaggttcctttgggttctggtatc 385
>dbj|AK103163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121D12, full insert sequence Length = 1301 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | || ||||| |||||||| Sbjct: 821 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 762 Query: 376 gggggcatacttccgaatgaaggcctggcgattgagatcctttgccttatcagcatagat 435 |||||||||| ||||| | |||||| |||||||||||||| ||||| || ||||| || Sbjct: 761 aagggcatacttgcgaataagggcctgacgattgagatccttcgccttctccgcataaat 702 Query: 436 tctcgtgtcagatgtcaacctacttgacatttcactaacct 476 ||| || ||||| |||||||| | ||||||||||| |||| Sbjct: 701 tctagtatcagagatcaacctattggacatttcactcacct 661 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 538 ctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatc 588 |||||| |||||||| ||||| || || | |||||| |||||||||||||| Sbjct: 660 ctcataaagctcatcattcaacttggccaggttcctttgggttctggtatc 610 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/60 (85%), Gaps = 2/60 (3%) Strand = Plus / Minus Query: 208 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 267 |||||||||||| ||||||| |||||| ||| |||| |||||||| |||| ||||||| Sbjct: 945 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 888
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence Length = 105327 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 ||||||||||| ||||| |||||||| || |||||||||||||| ||||| || || ||| Sbjct: 82832 agcttttcaccaacacccagaacttcctgcacattgcgagtcattatttggtggacttca 82891 Query: 542 tagagctcatcgttcaatttcgcaatgttcc 572 || |||||||| ||||| || ||||| |||| Sbjct: 82892 tacagctcatcattcaacttagcaatattcc 82922
>ref|NM_101060.2| Arabidopsis thaliana SEC22; transporter AT1G11890 (SEC22) mRNA, complete cds Length = 1092 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 701 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 642 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 641 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 582 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 581 tcatagagttcatcattcaa 562
>gb|AY079413.1| Arabidopsis thaliana putative vesicle transport protein (At1g11890) mRNA, complete cds Length = 688 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 554 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 495 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 494 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 435 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 434 tcatagagttcatcattcaa 415
>gb|AY045795.1| Arabidopsis thaliana putative vesicle transport protein (At1g11890) mRNA, complete cds Length = 992 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 671 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 612 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 611 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 552 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 551 tcatagagttcatcattcaa 532
>emb|BX814703.1|CNS0ABY6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZF07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 995 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 696 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 637 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 636 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 577 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 576 tcatagagttcatcattcaa 557
>emb|BX818041.1|CNS0AB1T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 981 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 649 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 590 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 589 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 530 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 529 tcatagagttcatcattcaa 510
>emb|BX841894.1|CNS09Y4T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL14ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 986 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 677 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 618 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 617 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 558 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 557 tcatagagttcatcattcaa 538
>gb|AY086749.1| Arabidopsis thaliana clone 273 mRNA, complete sequence Length = 1010 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 701 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 642 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| ||| Sbjct: 641 tccagcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacc 582 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 581 tcatagagttcatcattcaa 562
>gb|DQ235196.1| Solanum tuberosum clone 168D05 unknown mRNA Length = 1007 Score = 67.9 bits (34), Expect = 4e-08 Identities = 136/170 (80%) Strand = Plus / Minus Query: 389 cgaatgaaggcctggcgattgagatcctttgccttatcagcatagattctcgtgtcagat 448 ||||| || ||||| ||||| | ||| ||||| ||||||||||| || | | |||||| Sbjct: 703 cgaatcaaagcctgacgatttaaatcttttgctttatcagcatatatccgggattcagat 644 Query: 449 gtcaacctacttgacatttcactaacctgatcaagcttttcaccgacaccaagaacttct 508 ||||| | || ||||| | ||| ||||| || | ||||||||| || |||||||||||| Sbjct: 643 gtcaagcggctagacatctgactgacctggtccaacttttcaccaacgccaagaacttct 584 Query: 509 tgaacattgcgagtcatgatttgatgcacctcatagagctcatcgttcaa 558 || ||||| |||||||| || ||||| || || || |||||||| ||||| Sbjct: 583 tggacatttcgagtcattatctgatgaacttcgtaaagctcatcattcaa 534
>gb|BT012943.1| Lycopersicon esculentum clone 114111R, mRNA sequence Length = 1192 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 485 ttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctcatag 544 |||||||| ||||||||||||||||| ||||| |||||||| || ||||| || ||||| Sbjct: 707 ttttcaccaacaccaagaacttcttgtacatttcgagtcattatctgatgaacttcataa 648 Query: 545 agctcatcgttcaa 558 || ||||| ||||| Sbjct: 647 agttcatcattcaa 634
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 482 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 541 ||||||||||| ||||| | |||||||| ||||| || ||||| |||||||| |||||| Sbjct: 102247 agcttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacctca 102306 Query: 542 tagagctcatcgttcaa 558 ||||| ||||| ||||| Sbjct: 102307 tagagttcatcattcaa 102323
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | ||| ||||| |||||||| Sbjct: 179385 tcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaac 179326 Query: 376 gggggcatactt 387 ||||||||||| Sbjct: 179325 aggggcatactt 179314
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05, complete sequence Length = 82985 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | ||| ||||| |||||||| Sbjct: 71484 tcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaac 71543 Query: 376 gggggcatactt 387 ||||||||||| Sbjct: 71544 aggggcatactt 71555
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | ||| ||||| |||||||| Sbjct: 12842206 tcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaac 12842147 Query: 376 gggggcatactt 387 ||||||||||| Sbjct: 12842146 aggggcatactt 12842135
>emb|BX818320.1|CNS0AB2F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL72ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1000 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Minus Query: 419 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 478 |||||||||||||| || | | |||||||| |||| || ||||| || || ||||| Sbjct: 677 gccttatcagcatatatacgagattcagatgttaaccggctcgacatctcgctcacctgg 618 Query: 479 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 538 || ||||||||||| ||||| | | || ||| ||||| || ||||| |||||||| ||| Sbjct: 617 tccagcttttcaccaacacctaagattttttgcacattccgggtcattatttgatgaacc 558 Query: 539 tcatagagctcatcgttcaa 558 |||||||| ||||| ||||| Sbjct: 557 tcatagagttcatcattcaa 538
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0061E21 Length = 155085 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 316 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 375 ||||||||||||||||||| |||| || || || | ||| | ||| ||||| |||||||| Sbjct: 42724 tcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaac 42665 Query: 376 gggggcatactt 387 ||||||||||| Sbjct: 42664 aggggcatactt 42653
>gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete sequence Length = 108797 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 487 ttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctcatagag 546 |||||| |||||||||||||| || ||||| |||||||| || || || || ||||| || Sbjct: 51103 ttcaccaacaccaagaacttcctgcacattacgagtcataatctggtggacttcataaag 51162 Query: 547 ctcatcgttcaatttcgcaat 567 ||||| ||||| || ||||| Sbjct: 51163 ttcatcattcaactttgcaat 51183
>ref|XM_481473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 579 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 320 catatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaacgggg 379 ||||||||||||||| |||| || || || | ||| | ||| ||||| |||||||| ||| Sbjct: 417 catatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaacaggg 358 Query: 380 gcatactt 387 |||||||| Sbjct: 357 gcatactt 350
>gb|AF457114.1| Lepidothamnus laxifolius maturase K (matK) gene, complete cds; chloroplast gene for chloroplast product Length = 1527 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 263 agaatttctttctccagtcttct 285 ||||||||||||||||||||||| Sbjct: 1398 agaatttctttctccagtcttct 1420
>gb|AC103727.2| Homo sapiens chromosome 18, clone RP11-189C5, complete sequence Length = 149383 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 267 tttctttctccagtcttctaacacag 292 |||||||||||||||| ||||||||| Sbjct: 64964 tttctttctccagtctgctaacacag 64939
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence Length = 190295 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ttgatccagaatttctttct 275 |||||||||||||||||||| Sbjct: 49254 ttgatccagaatttctttct 49273
>gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosome 14, complete sequence Length = 181200 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tctacagagctcttgtatgt 98 |||||||||||||||||||| Sbjct: 123610 tctacagagctcttgtatgt 123591
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tcaccgacaccaagaacttc 507 |||||||||||||||||||| Sbjct: 1169179 tcaccgacaccaagaacttc 1169160
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 cctacttgacatttcactaa 473 |||||||||||||||||||| Sbjct: 23209 cctacttgacatttcactaa 23228
>dbj|BS000064.1| Pan troglodytes chromosome 22 clone:RP43-044K09, map 22, complete sequences Length = 178960 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 aatttctttctccagtcttc 284 |||||||||||||||||||| Sbjct: 58583 aatttctttctccagtcttc 58602
>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5) Length = 2199546 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 agctcatcgttcaatttcgc 564 |||||||||||||||||||| Sbjct: 1432532 agctcatcgttcaatttcgc 1432513
>dbj|AP001680.1| Homo sapiens genomic DNA, chromosome 21q, section 24/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 aatttctttctccagtcttc 284 |||||||||||||||||||| Sbjct: 18173 aatttctttctccagtcttc 18192
>emb|AL591127.12| Mouse DNA sequence from clone RP23-370H21 on chromosome 2, complete sequence Length = 125816 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 atgttcctctgggttctggt 585 |||||||||||||||||||| Sbjct: 4821 atgttcctctgggttctggt 4802
>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence Length = 230420 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 accaagaacttcttgaacat 515 |||||||||||||||||||| Sbjct: 98583 accaagaacttcttgaacat 98602
>dbj|AP000957.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B781M3, LL56-APP region, complete sequence Length = 190937 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 aatttctttctccagtcttc 284 |||||||||||||||||||| Sbjct: 129262 aatttctttctccagtcttc 129281 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,001,387 Number of Sequences: 3902068 Number of extensions: 5001387 Number of successful extensions: 117955 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117615 Number of HSP's gapped (non-prelim): 329 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
