ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30a19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein Length = 2897 Score = 327 bits (165), Expect = 3e-86 Identities = 183/189 (96%) Strand = Plus / Minus Query: 440 accccgttggcaccaatgtaggggacggtccaggagaacaaccaatcgcaggacctgggg 499 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 2584 accccgttgtcaccaatgtagggggcggtccaggagaacaaccaatcgcaggacctgctg 2525 Query: 500 ctggaggggatcttgctacgatacacaacggcaccagctgaaccaaccgcagcaccactt 559 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2524 ctggaggggatcttggtacgatacacaacggcaccagctgaaccaaccgcagcaccactt 2465 Query: 560 gggtggacgtggaggaatgcaccccattgcccattctgaatatctgatgggtagggtgta 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2464 gggtggacgtggaggaatgcaccccattgcccattctgaatatctgatgggtagggagta 2405 Query: 620 tcatagata 628 ||||||||| Sbjct: 2404 tcatagata 2396
>ref|XM_636506.1| Dictyostelium discoideum hypothetical protein (DDB0205985), partial mRNA Length = 819 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 acttgtaaataatataaaatca 85 |||||||||||||||||||||| Sbjct: 444 acttgtaaataatataaaatca 465
>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence Length = 122076 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 586 ttgcccattctgaatatctgat 607 |||||||||||||||||||||| Sbjct: 72556 ttgcccattctgaatatctgat 72577
>emb|AL591848.13| Human DNA sequence from clone RP11-439E19 on chromosome 1 Contains the 3' end of the gene for a novel protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215), a putative novel transcript, the gene for CGI-49 protein (FLJ90697), a ribosomal protein L35a (RPL35A) pseudogene, a novel gene (FLJ12783, FLJ43187), the 3' end of a pseudogene similar to part of the kinesin family member 1C (KIF1C) and a CpG island, complete sequence Length = 144941 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 tcttccttgattattcataag 130 ||||||||||||||||||||| Sbjct: 8124 tcttccttgattattcataag 8144
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence Length = 541399 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gacttgtaaataatataaaat 83 ||||||||||||||||||||| Sbjct: 7960 gacttgtaaataatataaaat 7940
>emb|BX004833.16| Zebrafish DNA sequence from clone DKEY-153J5 in linkage group 17, complete sequence Length = 216190 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tatttatttaggataacagta 29 ||||||||||||||||||||| Sbjct: 132288 tatttatttaggataacagta 132308
>emb|AL772219.7| Zebrafish DNA sequence from clone DKEY-51K10 in linkage group 17, complete sequence Length = 117244 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tatttatttaggataacagta 29 ||||||||||||||||||||| Sbjct: 20565 tatttatttaggataacagta 20585
>ref|XM_527031.1| PREDICTED: Pan troglodytes protocadherin alpha 9 (LOC471653), mRNA Length = 5640 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 2549 cgcaggacctggggctggag 2568 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|XM_527030.1| PREDICTED: Pan troglodytes protocadherin alpha 8 (LOC471652), mRNA Length = 2409 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA Length = 6684 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 4364 cgcaggacctggggctggag 4383 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1976 cgcaggacctggggctggag 1995
>ref|XM_530846.1| PREDICTED: Pan troglodytes LOC462126 (LOC462126), mRNA Length = 581 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 308 cgcaggacctggggctggag 289
>ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadherin alpha 7 isoform 2 precursor; KIAA0345-like 7; ortholog to mouse CNR4 (LOC462125), mRNA Length = 7283 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 4721 cgcaggacctggggctggag 4740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 2435 cgcaggacctggggctggag 2454
>ref|NM_053941.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3), mRNA Length = 5226 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 137 cgcaggacctggggctggag 156
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 976253 tcatttattgtcttcttcct 976272
>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete sequence Length = 157970 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 96988 cgcaggacctggggctggag 96969 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 90755 cgcaggacctggggctggag 90736 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 63861 cgcaggacctggggctggag 63842 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 57569 cgcaggacctggggctggag 57550 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 50631 cgcaggacctggggctggag 50612 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 43457 cgcaggacctggggctggag 43438 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 35907 cgcaggacctggggctggag 35888 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 22849 cgcaggacctggggctggag 22830
>gb|BC080863.1| Mus musculus protocadherin alpha 7, mRNA (cDNA clone MGC:90581 IMAGE:30356469), complete cds Length = 3882 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 268 cgcaggacctggggctggag 287
>gb|BC082326.1| Mus musculus protocadherin alpha 1, mRNA (cDNA clone MGC:90628 IMAGE:30356350), complete cds Length = 4942 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 250 cgcaggacctggggctggag 269
>gb|BC061406.1| Xenopus tropicalis mitochondrial outer membrane protein TOM40, mRNA (cDNA clone MGC:75995 IMAGE:5384501), complete cds Length = 1911 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cctggggctggaggggatcttgct 516 ||||||||||||||||||| |||| Sbjct: 100 cctggggctggaggggatcctgct 77
>gb|AC117748.13| Mus musculus chromosome 5, clone RP24-317A24, complete sequence Length = 180438 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 atatctcatttattgtcttc 111 |||||||||||||||||||| Sbjct: 37559 atatctcatttattgtcttc 37540
>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5 Length = 297736 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 135122 cgcaggacctggggctggag 135141 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 122064 cgcaggacctggggctggag 122083 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 114514 cgcaggacctggggctggag 114533 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 107340 cgcaggacctggggctggag 107359 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 100402 cgcaggacctggggctggag 100421 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 94110 cgcaggacctggggctggag 94129 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 67216 cgcaggacctggggctggag 67235 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 60983 cgcaggacctggggctggag 61002
>ref|NM_009960.1| Mus musculus protocadherin alpha 11 (Pcdha11), mRNA Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_007766.1| Mus musculus protocadherin alpha 4 (Pcdha4), mRNA Length = 5323 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 223 cgcaggacctggggctggag 242
>ref|NM_031856.1| Homo sapiens protocadherin alpha 8 (PCDHA8), transcript variant 2, mRNA Length = 2445 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_031852.1| Homo sapiens protocadherin alpha 7 (PCDHA7), transcript variant 2, mRNA Length = 2370 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_031497.1| Homo sapiens protocadherin alpha 3 (PCDHA3), transcript variant 2, mRNA Length = 2475 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_031496.1| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 3, mRNA Length = 3070 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 252 cgcaggacctggggctggag 271
>ref|NM_031495.1| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 2, mRNA Length = 2619 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 252 cgcaggacctggggctggag 271
>ref|NM_031861.1| Homo sapiens protocadherin alpha 11 (PCDHA11), transcript variant 2, mRNA Length = 3291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1004 cgcaggacctggggctggag 1023
>ref|NM_031860.1| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant 3, mRNA Length = 4465 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>ref|NM_031859.1| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant 2, mRNA Length = 2535 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>ref|NM_018905.2| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 1, mRNA Length = 5360 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 252 cgcaggacctggggctggag 271
>ref|NM_018906.2| Homo sapiens protocadherin alpha 3 (PCDHA3), transcript variant 1, mRNA Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_018910.2| Homo sapiens protocadherin alpha 7 (PCDHA7), transcript variant 1, mRNA Length = 5221 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_018911.2| Homo sapiens protocadherin alpha 8 (PCDHA8), transcript variant 1, mRNA Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_018901.2| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant 1, mRNA Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>ref|NM_018902.3| Homo sapiens protocadherin alpha 11 (PCDHA11), transcript variant 1, mRNA Length = 6115 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1004 cgcaggacctggggctggag 1023
>gb|BC069064.1| Homo sapiens protocadherin alpha 3, mRNA (cDNA clone MGC:95338 IMAGE:7216877), complete cds Length = 2475 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|XR_004408.1| PREDICTED: Mus musculus similar to protocadherin alpha 11 (LOC634268), mRNA Length = 905 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 296 cgcaggacctggggctggag 315
>ref|XM_908963.2| PREDICTED: Mus musculus similar to protocadherin alpha 12 (LOC634282), mRNA Length = 2847 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|XM_908935.2| PREDICTED: Mus musculus similar to protocadherin alpha 10 (LOC634256), mRNA Length = 2587 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 300 cgcaggacctggggctggag 319
>ref|XM_991191.1| PREDICTED: Mus musculus protocadherin alpha 7 (Pcdha7), mRNA Length = 2618 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 268 cgcaggacctggggctggag 287
>ref|XM_908840.2| PREDICTED: Mus musculus similar to protocadherin alpha 6 (LOC634185), mRNA Length = 2700 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 311 cgcaggacctggggctggag 330
>ref|XM_908824.2| PREDICTED: Mus musculus similar to protocadherin alpha 5 (LOC634174), mRNA Length = 2555 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|XM_908786.2| PREDICTED: Mus musculus similar to protocadherin alpha 3 (LOC634146), mRNA Length = 2510 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 256 cgcaggacctggggctggag 275
>ref|XM_991056.1| PREDICTED: Mus musculus protocadherin alpha 6 (Pcdha6), mRNA Length = 2611 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 330 cgcaggacctggggctggag 349
>ref|XM_908751.2| PREDICTED: Mus musculus similar to protocadherin alpha 1 (LOC634119), mRNA Length = 2564 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 265 cgcaggacctggggctggag 284
>gb|AY302550.1| Human echovirus 26 strain Coronel complete genome Length = 7424 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 caaacgacttgtaaataatataaa 81 ||||| |||||||||||||||||| Sbjct: 5308 caaacaacttgtaaataatataaa 5285
>gb|BC050257.1| Xenopus laevis hypothetical protein MGC53422, mRNA (cDNA clone MGC:53422 IMAGE:5571768), complete cds Length = 2459 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cctggggctggaggggatcttgct 516 ||||||||||||||||||| |||| Sbjct: 78 cctggggctggaggggatcctgct 55
>gb|BC060211.1| Mus musculus protocadherin alpha 4, mRNA (cDNA clone MGC:64735 IMAGE:6838078), complete cds Length = 4166 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 237 cgcaggacctggggctggag 256
>gb|BC054813.1| Mus musculus protocadherin alpha 6, mRNA (cDNA clone IMAGE:6841317), partial cds Length = 4337 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 252 cgcaggacctggggctggag 271
>gb|BC104804.1| Homo sapiens protocadherin alpha 9, transcript variant 1, mRNA (cDNA clone MGC:132464 IMAGE:8143807), complete cds Length = 3023 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 239 cgcaggacctggggctggag 258
>gb|BC104802.1| Homo sapiens protocadherin alpha 9, transcript variant 1, mRNA (cDNA clone MGC:132462 IMAGE:8143805), complete cds Length = 3023 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 239 cgcaggacctggggctggag 258
>gb|BC036674.2| Homo sapiens protocadherin alpha 6, transcript variant 1, mRNA (cDNA clone MGC:33675 IMAGE:5263226), complete cds Length = 4666 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 260 cgcaggacctggggctggag 279
>gb|BC003126.1| Homo sapiens protocadherin alpha 2, transcript variant 3, mRNA (cDNA clone MGC:3223 IMAGE:3503666), complete cds Length = 3070 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 252 cgcaggacctggggctggag 271
>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the 5' end of the GRID1 gene for glutamate receptor (ionotropic) delta 1, the 3' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete sequence Length = 167780 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaataatataaaatcacaca 89 |||||||||||||||||||| Sbjct: 75191 aaataatataaaatcacaca 75210
>emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on chromosome 10 Contains a AFR GTPase-activating protein (MRIP2) pseudogene, a novel gene, gene LOC93550, the 3' end of a KIAA0592 pseudogene and three CpG islands, complete sequence Length = 179193 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atagtttttatcagtagagt 350 |||||||||||||||||||| Sbjct: 8874 atagtttttatcagtagagt 8893
>gb|AC144752.3| Pan troglodytes clone CH251-65N5, complete sequence Length = 113988 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 76506 tcatttattgtcttcttcct 76525
>emb|AL137157.7| Human DNA sequence from clone RP5-1116C7 on chromosome 1q24.1-25.1 Contains part of the DNM3 gene for dynamin 3, complete sequence Length = 109347 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tgtcttcttccttgattatt 124 |||||||||||||||||||| Sbjct: 98366 tgtcttcttccttgattatt 98385
>gb|AC148205.3| Callicebus moloch clone LB5-314H24, complete sequence Length = 153386 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 112634 tcatttattgtcttcttcct 112653
>gb|BC042887.1| Homo sapiens protocadherin alpha 6, mRNA (cDNA clone IMAGE:4822690) Length = 1748 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1332 cgcaggacctggggctggag 1313
>gb|BC043441.2| Homo sapiens protocadherin alpha 6, mRNA (cDNA clone IMAGE:5297539) Length = 3092 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1880 cgcaggacctggggctggag 1861 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1120 cgcaggacctggggctggag 1101
>gb|AF464178.1| Mus musculus protocadherin gene, exon alpha 4 and partial cds Length = 3391 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 638 cgcaggacctggggctggag 657
>gb|AF464180.1| Mus musculus protocadherin mRNA, complete cds Length = 2856 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 171 cgcaggacctggggctggag 190
>gb|BC030897.1| Mus musculus, protocadherin alpha 6, clone IMAGE:4502027, mRNA Length = 2891 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 259 cgcaggacctggggctggag 278
>gb|AC097063.2| Homo sapiens chromosome 1 clone RP11-430H12, complete sequence Length = 183086 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 atttatttaggataacagta 29 |||||||||||||||||||| Sbjct: 125790 atttatttaggataacagta 125771
>ref|NM_031849.1| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 3, mRNA Length = 4495 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 173 cgcaggacctggggctggag 192
>ref|NM_018909.2| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 1, mRNA Length = 5287 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 173 cgcaggacctggggctggag 192
>ref|NM_031848.1| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 2, mRNA Length = 2439 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 173 cgcaggacctggggctggag 192
>dbj|AK141960.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130075J08 product:protocadherin alpha 11, full insert sequence Length = 3324 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 293 cgcaggacctggggctggag 312
>dbj|AK139436.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830082M15 product:protocadherin alpha 11, full insert sequence Length = 4040 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 292 cgcaggacctggggctggag 311
>gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191886 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cacatgatatctcatttatt 105 |||||||||||||||||||| Sbjct: 139418 cacatgatatctcatttatt 139399
>dbj|AK139318.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830007O22 product:protocadherin alpha 11, full insert sequence Length = 4969 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 2835 cgcaggacctggggctggag 2816 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 306 cgcaggacctggggctggag 287
>dbj|AK149282.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930010F15 product:protocadherin alpha 4, full insert sequence Length = 2876 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 265 cgcaggacctggggctggag 284
>ref|NM_007767.1| Mus musculus protocadherin alpha 6 (Pcdha6), mRNA Length = 5369 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 272 cgcaggacctggggctggag 291
>ref|NM_054072.1| Mus musculus protocadherin alpha 1 (Pcdha1), mRNA Length = 5248 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 149 cgcaggacctggggctggag 168
>ref|NM_009957.1| Mus musculus protocadherin alpha 7 (Pcdha7), mRNA Length = 5215 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_009959.1| Mus musculus protocadherin alpha 5 (Pcdha5), mRNA Length = 5206 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_009961.1| Mus musculus protocadherin alpha 10 (Pcdha10), mRNA Length = 5242 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 149 cgcaggacctggggctggag 168
>ref|NM_198117.1| Mus musculus protocadherin alpha 2 (Pcdha2), mRNA Length = 5248 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_138662.1| Mus musculus protocadherin alpha 3 (Pcdha3), mRNA Length = 5230 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 137 cgcaggacctggggctggag 156
>ref|NM_138663.2| Mus musculus protocadherin alpha 12 (Pcdha12), mRNA Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>dbj|AK048980.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230087K19 product:protocadherin alpha 4, full insert sequence Length = 2894 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 254 cgcaggacctggggctggag 273
>gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone RP23-326L17, complete sequence Length = 218905 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 218788 cgcaggacctggggctggag 218807 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 212220 cgcaggacctggggctggag 212239 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 205340 cgcaggacctggggctggag 205359 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 196310 cgcaggacctggggctggag 196329
>dbj|AB176653.1| Macaca fuscata CNRv09 mRNA for Protocadherin alpha, complete cds Length = 3162 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>dbj|AB176651.1| Macaca fuscata CNRv07 mRNA for Protocadherin alpha, complete cds Length = 3123 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alpha, complete cds Length = 3120 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>dbj|AB176647.1| Macaca fuscata CNRv03 mRNA for Protocadherin alpha, complete cds Length = 3168 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 152 cgcaggacctggggctggag 171
>dbj|AB176646.1| Macaca fuscata CNRv02 mRNA for Protocadherin alpha, complete cds Length = 3156 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>dbj|AK043705.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830022B16 product:protocadherin alpha 11, full insert sequence Length = 2878 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 254 cgcaggacctggggctggag 273
>gb|AY013765.1| Mus musculus protocadherin alpha 7 mRNA, complete cds Length = 5215 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013764.1| Mus musculus protocadherin alpha 6 mRNA, complete cds Length = 5242 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013763.1| Mus musculus protocadherin alpha 5 mRNA, complete cds Length = 5206 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013762.1| Mus musculus protocadherin alpha 4 mRNA, complete cds Length = 5245 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013761.1| Mus musculus protocadherin alpha 3 mRNA, complete cds Length = 5230 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 137 cgcaggacctggggctggag 156
>gb|AY013760.1| Mus musculus protocadherin alpha 2 mRNA, complete cds Length = 5248 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013759.1| Mus musculus protocadherin alpha 12 mRNA, complete cds Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013758.1| Mus musculus protocadherin alpha 11 mRNA, complete cds Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY013757.1| Mus musculus protocadherin alpha 10 mRNA, complete cds Length = 5242 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 149 cgcaggacctggggctggag 168
>gb|AY013756.1| Mus musculus protocadherin alpha 1 mRNA, complete cds Length = 5248 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 149 cgcaggacctggggctggag 168
>ref|XM_393332.2| PREDICTED: Apis mellifera similar to GH03617p (LOC409841), mRNA Length = 2610 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ttggaaacatatccatagtt 336 |||||||||||||||||||| Sbjct: 1857 ttggaaacatatccatagtt 1838
>ref|NM_199504.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA Length = 5244 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>ref|NM_199506.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA Length = 5289 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 197 cgcaggacctggggctggag 216
>gb|AY573980.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6) mRNA, complete cds Length = 5239 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY573977.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3) mRNA, complete cds Length = 5227 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 137 cgcaggacctggggctggag 156
>gb|AY573976.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2) mRNA, complete cds Length = 5245 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AY573972.1| Rattus norvegicus protocadherin alpha 10 (Pcdha10) mRNA, complete cds Length = 5338 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 236 cgcaggacctggggctggag 255
>ref|NM_053939.1| Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA Length = 5337 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 236 cgcaggacctggggctggag 255
>ref|NM_203794.1| Xenopus tropicalis mitochondrial outer membrane protein TOM40 (MGC75995), mRNA Length = 1911 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cctggggctggaggggatcttgct 516 ||||||||||||||||||| |||| Sbjct: 100 cctggggctggaggggatcctgct 77
>gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, complete sequence Length = 199704 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 191727 cgcaggacctggggctggag 191746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 185594 cgcaggacctggggctggag 185613 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 179426 cgcaggacctggggctggag 179445 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 172110 cgcaggacctggggctggag 172129 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 164436 cgcaggacctggggctggag 164455 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 157868 cgcaggacctggggctggag 157887 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 150988 cgcaggacctggggctggag 151007 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 141958 cgcaggacctggggctggag 141977
>ref|NM_014005.3| Homo sapiens protocadherin alpha 9 (PCDHA9), transcript variant 2, mRNA Length = 6388 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 870 cgcaggacctggggctggag 889
>ref|NM_031857.1| Homo sapiens protocadherin alpha 9 (PCDHA9), transcript variant 1, mRNA Length = 5984 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 870 cgcaggacctggggctggag 889
>gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P18, complete sequence Length = 218100 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 214841 cgcaggacctggggctggag 214822 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 207167 cgcaggacctggggctggag 207148 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 199851 cgcaggacctggggctggag 199832 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 193683 cgcaggacctggggctggag 193664 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 187550 cgcaggacctggggctggag 187531 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 162284 cgcaggacctggggctggag 162265 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 156749 cgcaggacctggggctggag 156730 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 147377 cgcaggacctggggctggag 147358
>gb|AF169694.1|AF169694 Homo sapiens protocadherin alpha 6 alternate isoform (PCDH-alpha6) mRNA, complete cds Length = 2231 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 173 cgcaggacctggggctggag 192
>gb|AF169689.1|AF169689 Homo sapiens protocadherin alpha 10 alternate isoform (PCDH-alpha10) mRNA, complete cds Length = 2201 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8, complete sequence Length = 117096 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 114785 cgcaggacctggggctggag 114766 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 87892 cgcaggacctggggctggag 87873 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 81600 cgcaggacctggggctggag 81581 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 74667 cgcaggacctggggctggag 74648 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 67495 cgcaggacctggggctggag 67476 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 59941 cgcaggacctggggctggag 59922 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 46880 cgcaggacctggggctggag 46861
>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon cluster Length = 249555 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 60064 cgcaggacctggggctggag 60083 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 36310 cgcaggacctggggctggag 36329 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 15296 cgcaggacctggggctggag 15315 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 9132 cgcaggacctggggctggag 9151
>dbj|AB113393.1| Rattus norvegicus rCNRv10 mRNA for cadherin-related neuronal receptor 10, complete cds Length = 5337 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 236 cgcaggacctggggctggag 255
>dbj|AB113389.1| Rattus norvegicus rCNRv06 mRNA for cadherin-related neuronal receptor 6, complete cds Length = 5289 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 197 cgcaggacctggggctggag 216
>dbj|AB113386.1| Rattus norvegicus rCNRv03 mRNA for cadherin-related neuronal receptor 3, complete cds Length = 5226 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 137 cgcaggacctggggctggag 156
>dbj|AB113385.1| Rattus norvegicus rCNRv02 mRNA for cadherin-related neuronal receptor 2, complete cds Length = 5244 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>dbj|AB002343.1| Homo sapiens mRNA for KIAA0345 gene, partial cds Length = 6387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 870 cgcaggacctggggctggag 889
>dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuronal receptor, complete cds Length = 10521 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 4185 cgcaggacctggggctggag 4204
>dbj|AK129120.1| Mus musculus mRNA for mKIAA0345 protein Length = 4568 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 239 cgcaggacctggggctggag 258
>dbj|AK102163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086H01, full insert sequence Length = 1467 Score = 40.1 bits (20), Expect = 8.6 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 353 agatctgaatttgcaagcttcacaccatagat 384 ||||||||| ||||||| |||||||||||||| Sbjct: 245 agatctgaaattgcaag-ttcacaccatagat 275
>emb|Z65300.1|HS30F1R H.sapiens CpG island DNA genomic Mse1 fragment, clone 30f1, reverse read cpg30f1.rt1a Length = 255 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 198 cgcaggacctggggctggag 217
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 caggacctggggctggaggg 507 |||||||||||||||||||| Sbjct: 3547912 caggacctggggctggaggg 3547893
>gb|AC115853.8| Mus musculus chromosome 5, clone RP24-273B9, complete sequence Length = 188562 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 tcttcttccttgattattca 126 |||||||||||||||||||| Sbjct: 128567 tcttcttccttgattattca 128586
>gb|AF152317.1|AF152317 Homo sapiens protocadherin alpha 9 (PCDH-alpha9) mRNA, complete cds Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152316.1|AF152316 Homo sapiens protocadherin alpha 8 (PCDH-alpha8) mRNA, complete cds Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152315.1|AF152315 Homo sapiens protocadherin alpha 7 (PCDH-alpha7) mRNA, complete cds Length = 5221 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152314.1|AF152314 Homo sapiens protocadherin alpha 6 (PCDH-alpha6) mRNA, complete cds Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152311.1|AF152311 Homo sapiens protocadherin alpha 3 (PCDH-alpha3) mRNA, complete cds Length = 5260 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152310.1|AF152310 Homo sapiens protocadherin alpha 2 (PCDH-alpha2) mRNA, complete cds Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152307.1|AF152307 Homo sapiens protocadherin alpha 11 (PCDH-alpha11) mRNA, complete cds Length = 5257 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152306.1|AF152306 Homo sapiens protocadherin alpha 10 (PCDH-alpha10) mRNA, complete cds Length = 5254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>gb|AF152487.1|AF152487 Homo sapiens protocadherin alpha 9 short form protein (PCDH-alpha9) variable region sequence, complete cds Length = 2529 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152486.1|AF152486 Homo sapiens protocadherin alpha 8 short form protein (PCDH-alpha8) variable region sequence, complete cds Length = 2445 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152485.1|AF152485 Homo sapiens protocadherin alpha 7 short form protein (PCDH-alpha7) variable region sequence, complete cds Length = 2370 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152484.1|AF152484 Homo sapiens protocadherin alpha 6 short form protein (PCDH-alpha6) variable region sequence, complete cds Length = 2412 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152481.1|AF152481 Homo sapiens protocadherin alpha 3 short form protein (PCDH-alpha3) variable region sequence, complete cds Length = 2475 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152480.1|AF152480 Homo sapiens protocadherin alpha 2 short form protein (PCDH-alpha2) variable region sequence, complete cds Length = 2513 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152476.1|AF152476 Homo sapiens protocadherin alpha 11 short form protein (PCDH-alpha11) variable region sequence, complete cds Length = 2433 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 146 cgcaggacctggggctggag 165
>gb|AF152475.1|AF152475 Homo sapiens protocadherin alpha 10 short form protein (PCDH-alpha10) variable region sequence, complete cds Length = 2535 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 143 cgcaggacctggggctggag 162
>emb|CR762023.2| Xenopus tropicalis finished cDNA, clone TEgg054b02 Length = 1215 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cctggggctggaggggatcttgct 516 ||||||||||||||||||| |||| Sbjct: 75 cctggggctggaggggatcctgct 52
>gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M10, complete sequence Length = 189199 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 111058 tcatttattgtcttcttcct 111077
>emb|BX005189.9| Mouse DNA sequence from clone RP23-170L24 on chromosome X, complete sequence Length = 206372 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gttgagatctgaatttgcaa 368 |||||||||||||||||||| Sbjct: 122017 gttgagatctgaatttgcaa 121998
>gb|BC079625.1| Mus musculus cDNA clone IMAGE:30536554, containing frame-shift errors Length = 4877 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 266 cgcaggacctggggctggag 285
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 1027186 tcatttattgtcttcttcct 1027205
>emb|AL732480.12| Mouse DNA sequence from clone RP23-11N21 on chromosome 4, complete sequence Length = 209063 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttgtaaataatataaaatca 85 |||||||||||||||||||| Sbjct: 70574 ttgtaaataatataaaatca 70593
>gb|AC150597.4| Aotus nancymaae clone CH258-191N23, complete sequence Length = 97432 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcatttattgtcttcttcct 116 |||||||||||||||||||| Sbjct: 71615 tcatttattgtcttcttcct 71634
>emb|AJ007610.1|HSAJ7610 Homo sapiens mRNA for protocadherin alpha 9 (PCDHA9 gene) Length = 4020 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1181 cgcaggacctggggctggag 1200
>emb|AJ007609.1|HSAJ7609 Homo sapiens mRNA for protocadherin alpha 11 (PCDHA11 gene) Length = 3856 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 1003 cgcaggacctggggctggag 1022
>dbj|D86917.1| Mus musculus mRNA for CNR2, complete cds Length = 5369 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 272 cgcaggacctggggctggag 291
>dbj|D86916.1| Mus musculus mRNA for CNR1, complete cds Length = 5323 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 223 cgcaggacctggggctggag 242
>dbj|AB008182.1| Mus musculus CNR7 mRNA for Cadherin-related neural recepter 7, partial cds Length = 2746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 39 cgcaggacctggggctggag 58
>dbj|AB008181.1| Mus musculus CNR6 mRNA for Cadherin-related neural recepter 6, partial cds Length = 2698 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 39 cgcaggacctggggctggag 58
>dbj|AB008180.1| Mus musculus CNR5 mRNA for Cadherin-related neural recepter 5, partial cds Length = 2746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 39 cgcaggacctggggctggag 58
>dbj|AB008179.1| Mus musculus CNR4 mRNA for Cadherin-related neural recepter 4, partial cds Length = 2707 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 39 cgcaggacctggggctggag 58
>dbj|AB008178.1| Mus musculus CNR3 mRNA for Cadherin-related neural recepter 3, partial cds Length = 2731 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cgcaggacctggggctggag 505 |||||||||||||||||||| Sbjct: 39 cgcaggacctggggctggag 58 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,591,046 Number of Sequences: 3902068 Number of extensions: 5591046 Number of successful extensions: 151525 Number of sequences better than 10.0: 159 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 151196 Number of HSP's gapped (non-prelim): 330 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
