ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30a04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence Length = 2199 Score = 139 bits (70), Expect = 1e-29 Identities = 124/142 (87%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 1755 tggacaagaatgcacattaaggacctccaacgcacaacaaagggatattgcagattctaa 1696 Query: 622 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 681 ||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct: 1695 ttcctcctcttgcaacatggtgcatgccaaaagttggaggttggtcaatcttgggcaatc 1636 Query: 682 aagcttcagaatcttcagtgag 703 ||||||||| | || ||||||| Sbjct: 1635 aagcttcagcacctccagtgag 1614
>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full insert sequence Length = 1911 Score = 125 bits (63), Expect = 2e-25 Identities = 114/131 (87%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1442 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1383 Query: 622 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 681 ||| || ||||||||||| |||||||||| ||||||||| || | || |||||||||||| Sbjct: 1382 ttcctcatcttgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1323 Query: 682 aagcttcagaa 692 ||||||||||| Sbjct: 1322 aagcttcagaa 1312
>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full insert sequence Length = 2385 Score = 117 bits (59), Expect = 5e-23 Identities = 113/131 (86%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1884 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1825 Query: 622 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 681 ||| || ||| ||||||| |||||||||| ||||||||| || | || |||||||||||| Sbjct: 1824 ttcctcatctcgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1765 Query: 682 aagcttcagaa 692 ||||||||||| Sbjct: 1764 aagcttcagaa 1754
>gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence Length = 1020 Score = 107 bits (54), Expect = 5e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 400 tggacaagaatgcacattaaggaactccaacgcactacaaagggatattgcagattctaa 341 Query: 622 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 681 ||| |||||||||||||| ||||||||| ||| ||||| || | ||||||||||||||| Sbjct: 340 ttcctcctcttgcaacatgatgcatgccagaagctggagattggacaatcttgggcaatc 281 Query: 682 aagcttcagaatcttcagtgag 703 ||||||||| | || ||||||| Sbjct: 280 aagcttcagcacctccagtgag 259 Score = 44.1 bits (22), Expect = 0.62 Identities = 37/42 (88%) Strand = Plus / Minus Query: 482 tatgcgatgaggctgctctgaatgcgcttgagagttgggcaa 523 |||| ||||||||||||||| |||||||| ||| | |||||| Sbjct: 480 tatgagatgaggctgctctggatgcgcttcagactggggcaa 439
>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA Length = 3459 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 2757 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 2698 Query: 622 ttcatcctcttgcaacattgtgcatgcc 649 ||| || ||||||||||| ||||||||| Sbjct: 2697 ttcctcatcttgcaacatggtgcatgcc 2670
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 76107 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 76166 Query: 622 ttcatcctcttgcaacattgtgcatgcc 649 ||| || ||||||||||| ||||||||| Sbjct: 76167 ttcctcatcttgcaacatggtgcatgcc 76194 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 652 aagttggaggttagccaatcttgggcaatcaagcttcagaa 692 ||||||||| || | || ||||||||||||||||||||||| Sbjct: 77343 aagttggagatttgtcagtcttgggcaatcaagcttcagaa 77383
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 141181 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 141122 Query: 622 ttcatcctcttgcaacattgtgcatgcc 649 ||| || ||||||||||| ||||||||| Sbjct: 141121 ttcctcatcttgcaacatggtgcatgcc 141094 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 652 aagttggaggttagccaatcttgggcaatcaagcttcagaa 692 ||||||||| || | || ||||||||||||||||||||||| Sbjct: 139945 aagttggagatttgtcagtcttgggcaatcaagcttcagaa 139905
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12779668 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12779727 Query: 622 ttcatcctcttgcaacattgtgcatgcc 649 ||| || ||||||||||| ||||||||| Sbjct: 12779728 ttcctcatcttgcaacatggtgcatgcc 12779755 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 652 aagttggaggttagccaatcttgggcaatcaagcttcagaa 692 ||||||||| || | || ||||||||||||||||||||||| Sbjct: 12780904 aagttggagatttgtcagtcttgggcaatcaagcttcagaa 12780944
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 562 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 621 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12787009 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12787068 Query: 622 ttcatcctcttgcaacattgtgcatgcc 649 ||| || ||||||||||| ||||||||| Sbjct: 12787069 ttcctcatcttgcaacatggtgcatgcc 12787096 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 652 aagttggaggttagccaatcttgggcaatcaagcttcagaa 692 ||||||||| || | || ||||||||||||||||||||||| Sbjct: 12788245 aagttggagatttgtcagtcttgggcaatcaagcttcagaa 12788285
>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8 Length = 207674 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 179 gaatctggtataatttcacacaa 201 ||||||||||||||||||||||| Sbjct: 81966 gaatctggtataatttcacacaa 81944
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46 Length = 198788 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 179 gaatctggtataatttcacacaa 201 ||||||||||||||||||||||| Sbjct: 71331 gaatctggtataatttcacacaa 71309
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 aatttcacacaaacttagtac 210 ||||||||||||||||||||| Sbjct: 1039207 aatttcacacaaacttagtac 1039227
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence Length = 191823 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 acaagaaatcaattggaaaaa 380 ||||||||||||||||||||| Sbjct: 163256 acaagaaatcaattggaaaaa 163236
>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence Length = 135883 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 acaagaaatcaattggaaaaa 380 ||||||||||||||||||||| Sbjct: 117289 acaagaaatcaattggaaaaa 117309
>emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chromosome 6 Contains the MTCO3P1 pseudogene for cytochrome c oxidase III, the HLA-DQB3 pseudogene for major histocompatibility complex, class II, DQ beta 3, the HLA-DQA2 gene for major histocompatibility complex, class II, DQ alpha 2, the HLA-DQB2 gene for major histocompatibility complex, class II, DQ beta 2 and one CpG island, complete sequence Length = 117303 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tggcttttttgtttcaaatct 457 ||||||||||||||||||||| Sbjct: 66812 tggcttttttgtttcaaatct 66832
>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete sequence Length = 109326 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tggcttttttgtttcaaatct 457 ||||||||||||||||||||| Sbjct: 106780 tggcttttttgtttcaaatct 106800
>dbj|AK045337.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130066B17 product:hypothetical protein, full insert sequence Length = 1787 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 83 atcaccaaccatcaggtggaaacatctcagttg 115 |||||||||||||| |||||| || |||||||| Sbjct: 1013 atcaccaaccatcaagtggaaccagctcagttg 981
>dbj|AK038454.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230013K13 product:[PYRUVATE DEHYDROGENASE [LIPOAMIDE]] KINASE ISOZYME 1, MITOCHONDRIAL PRECURSOR (EC 2.7.1.99) (PYRUVATE DEHYDROGENASE KINASE ISOFORM 1) (PDK P48) homolog [Rattus norvegicus], full insert sequence Length = 2598 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 83 atcaccaaccatcaggtggaaacatctcagttg 115 |||||||||||||| |||||| || |||||||| Sbjct: 1149 atcaccaaccatcaagtggaaccagctcagttg 1117
>emb|AL928963.8| Mouse DNA sequence from clone RP23-5K9 on chromosome 2, complete sequence Length = 216315 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 83 atcaccaaccatcaggtggaaacatctcagttg 115 |||||||||||||| |||||| || |||||||| Sbjct: 140746 atcaccaaccatcaagtggaaccagctcagttg 140714
>gb|BC078333.1| Danio rerio SRY-box containing gene 10, mRNA (cDNA clone IMAGE:7168235), complete cds Length = 2255 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ttattcattcatataaatacagat 282 ||||||||||||| |||||||||| Sbjct: 1240 ttattcattcatacaaatacagat 1217
>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence Length = 221261 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tggtataatttcacacaaac 203 |||||||||||||||||||| Sbjct: 220446 tggtataatttcacacaaac 220465
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 aatggcttttttgtttcaaa 454 |||||||||||||||||||| Sbjct: 1131070 aatggcttttttgtttcaaa 1131051
>gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, complete sequence Length = 183402 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ttattcattcatataaatac 278 |||||||||||||||||||| Sbjct: 77537 ttattcattcatataaatac 77518
>ref|NM_131875.1| Danio rerio SRY-box containing gene 10 (sox10), mRNA Length = 3231 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ttattcattcatataaatacagat 282 ||||||||||||| |||||||||| Sbjct: 2223 ttattcattcatacaaatacagat 2200
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 atttcagttcatcctcttgc 634 |||||||||||||||||||| Sbjct: 133427 atttcagttcatcctcttgc 133446
>ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510397.10) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 gacaatggcttttttgtttc 451 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510609.20) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 gacaatggcttttttgtttc 451 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence Length = 208798 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tttatttgtggacaagagtg 573 |||||||||||||||||||| Sbjct: 207754 tttatttgtggacaagagtg 207735
>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four novel genes, a novel pseudogene, the 5' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445) and two CpG islands, complete sequence Length = 93826 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 attcagcacaagaaatcaat 372 |||||||||||||||||||| Sbjct: 15037 attcagcacaagaaatcaat 15018
>gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212349 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ttcattcatataaatacaga 281 |||||||||||||||||||| Sbjct: 117673 ttcattcatataaatacaga 117654
>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21 Contains a novel pseudogene, a eukaryotic translation initiation factor 1A pseudogene 1 (EIF1AP1), part of a novel gene (LOC284729), a macrophage stimulating 1 (hepatocyte growth factor-like)(MST1) pseudogene and five CpG islands, complete sequence Length = 118067 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 attcagcacaagaaatcaat 372 |||||||||||||||||||| Sbjct: 48460 attcagcacaagaaatcaat 48441
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 aatggcttttttgtttcaaa 454 |||||||||||||||||||| Sbjct: 2691148 aatggcttttttgtttcaaa 2691167
>gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, complete sequence Length = 165849 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ttttttgtttcaaatctgga 460 |||||||||||||||||||| Sbjct: 103467 ttttttgtttcaaatctgga 103448
>gb|AF480912.1| Legionella pneumophila clone pA37F putative lipoprotein (plpA), putative copper efflux ATPase (copA2), chemiosmotic efflux system C protein A (cecA), chemiosmotic efflux system C protein B (cecB), chemiosmotic efflux system C protein C (cecC), putative copper efflux ATPase (copA1), chemiosmotic efflux system B protein A (cebA), chemiosmotic efflux system B protein B (cebB), chemiosmotic efflux system B protein C (cebC), putative cation efflux transporter (ctpA), putative cadmium efflux ATPase (cadA1), and cadA2 genes, complete cds; and unknown genes Length = 38800 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 aatggcttttttgtttcaaa 454 |||||||||||||||||||| Sbjct: 8184 aatggcttttttgtttcaaa 8203
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agaaatcaattggaaaaaca 382 |||||||||||||||||||| Sbjct: 73633 agaaatcaattggaaaaaca 73652
>gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, complete sequence Length = 97387 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ttttttgtttcaaatctgga 460 |||||||||||||||||||| Sbjct: 15709 ttttttgtttcaaatctgga 15690
>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold Length = 489372 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 aatggcttttttgtttcaaa 454 |||||||||||||||||||| Sbjct: 25788 aatggcttttttgtttcaaa 25807
>dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0033L07 product:transportin 3, full insert sequence Length = 2616 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 atttcagttcatcctcttgc 634 |||||||||||||||||||| Sbjct: 2440 atttcagttcatcctcttgc 2421
>gb|AF402677.1|AF402677 Danio rerio HMG-box transcription factor Sox10 (sox10) mRNA, complete cds Length = 3231 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ttattcattcatataaatacagat 282 ||||||||||||| |||||||||| Sbjct: 2223 ttattcattcatacaaatacagat 2200
>gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich glycoprotein VSP4 mRNA, complete cds Length = 4029 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 gcctgtagcccgccaaaatccagc 550 ||||| |||||||||||||||||| Sbjct: 1478 gcctgcagcccgccaaaatccagc 1501
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aagaaatcaattggaaaaac 381 |||||||||||||||||||| Sbjct: 10429419 aagaaatcaattggaaaaac 10429400
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aagaaatcaattggaaaaac 381 |||||||||||||||||||| Sbjct: 137124 aagaaatcaattggaaaaac 137105
>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B03 Length = 147748 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aagaaatcaattggaaaaac 381 |||||||||||||||||||| Sbjct: 29798 aagaaatcaattggaaaaac 29779
>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete sequence Length = 114287 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 aagacggttattcattcatataaa 275 ||||||||||||| |||||||||| Sbjct: 96079 aagacggttattctttcatataaa 96102
>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192387 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gtttccatatttcaactaga 353 |||||||||||||||||||| Sbjct: 82040 gtttccatatttcaactaga 82059
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete sequence Length = 264966 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agaaatcaattggaaaaaca 382 |||||||||||||||||||| Sbjct: 22213 agaaatcaattggaaaaaca 22232
>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252), and DS08881 (D260)), complete sequence Length = 196672 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agaaatcaattggaaaaaca 382 |||||||||||||||||||| Sbjct: 166919 agaaatcaattggaaaaaca 166900
>gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complete sequence Length = 210223 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tggtataatttcacacaaac 203 |||||||||||||||||||| Sbjct: 150048 tggtataatttcacacaaac 150029
>gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP65Aa gene, complete cds Length = 1585 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agaaatcaattggaaaaaca 382 |||||||||||||||||||| Sbjct: 1199 agaaatcaattggaaaaaca 1218
>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete sequence Length = 211321 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 tttatttgtggacaagagtg 573 |||||||||||||||||||| Sbjct: 81599 tttatttgtggacaagagtg 81618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,221,979 Number of Sequences: 3902068 Number of extensions: 6221979 Number of successful extensions: 111898 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111568 Number of HSP's gapped (non-prelim): 323 length of query: 707 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 684 effective length of database: 17,143,297,704 effective search space: 11726015629536 effective search space used: 11726015629536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
