ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 ... 46 0.12
2emb|BX950186.10| Zebrafish DNA sequence from clone CH211-103O18 ... 42 1.9
3emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in l... 42 1.9
4gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B... 42 1.9
5emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in ... 42 1.9
6ref|NM_203000.1| Arabidopsis thaliana unknown protein AT5G04220 ... 40 7.6
7ref|NM_120504.1| Arabidopsis thaliana unknown protein AT5G04220 ... 40 7.6
8ref|XM_527549.1| PREDICTED: Pan troglodytes similar to Sorting n... 40 7.6
9gb|AC167559.2| Echinops telfairi, clone Echinops telfairi -24239... 40 7.6
10gb|AC116706.12| Mus musculus chromosome 1, clone RP23-37D15, com... 40 7.6
11ref|XM_322928.1| Neurospora crassa OR74A hypothetical protein ( ... 40 7.6
12ref|XM_956261.1| Neurospora crassa OR74A hypothetical protein ( ... 40 7.6
13gb|DQ492684.1| Homo sapiens heat shock transcription factor 2 (H... 40 7.6
14ref|NM_016224.3| Homo sapiens sorting nexin 9 (SNX9), mRNA 40 7.6
15gb|DQ465384.1| Oreochromis mossambicus clone SSH #509 mitochondr... 40 7.6
16gb|BC001084.2| Homo sapiens sorting nexin 9, mRNA (cDNA clone IM... 40 7.6
17emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on ch... 40 7.6
18gb|BT009742.1| Synthetic construct Homo sapiens sorting nexin 9 ... 40 7.6
19emb|AL133352.12| Human DNA sequence from clone RP11-411B6 on chr... 40 7.6
20emb|AL121954.7|HSDJ506O9 Human DNA sequence from clone RP3-506O9... 40 7.6
21emb|AL035634.7|HS403L10 Human DNA sequence from clone RP3-403L10... 40 7.6
22emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 o... 40 7.6
23gb|AY059741.1| Arabidopsis thaliana At5g04220 mRNA sequence 40 7.6
24gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, compl... 40 7.6
25emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC... 40 7.6
26emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.6
27gb|BC005022.1| Homo sapiens sorting nexin 9, mRNA (cDNA clone MG... 40 7.6
28dbj|AK127345.1| Homo sapiens cDNA FLJ45417 fis, clone BRHIP30338... 40 7.6
29gb|AF331667.1| Homo sapiens heat shock factor 2 (HSF2) gene, pro... 40 7.6
30gb|AF172847.1|AF172847 Homo sapiens sorting nexin 9 (SNX9) mRNA,... 40 7.6
31gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, compl... 40 7.6
32dbj|AB168588.1| Macaca fascicularis testis cDNA clone: QtsA-1324... 40 7.6
33gb|AF121859.1|AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA,... 40 7.6
34gb|AY028171.1| Leishmania donovani extra chromosome XC290, parti... 40 7.6
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
36gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, comple... 40 7.6
37gb|AC021648.25| Homo sapiens 12 BAC RP11-255I14 (Roswell Park Ca... 40 7.6
38gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, comple... 40 7.6
39dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41gb|AY892413.1| Synthetic construct Homo sapiens clone FLH014894.... 40 7.6
42gb|AY892412.1| Synthetic construct Homo sapiens clone FLH014893.... 40 7.6
43dbj|AK026637.1| Homo sapiens cDNA: FLJ22984 fis, clone KAT11574,... 40 7.6
44gb|AF131214.1|AF131214 Homo sapiens SH3 and PX domain-containing... 40 7.6
45gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, com... 40 7.6
46gb|AF076957.1|AF076957 Homo sapiens SDP1 protein mRNA, complete cds 40 7.6
47dbj|AB209736.1| Homo sapiens mRNA for sorting nexin 9 variant pr... 40 7.6 
>emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 in linkage group 19,
             complete sequence
          Length = 163300

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 280   cgaacgtgttgctgctgcgaaga 302
             |||||||||||||||||||||||
Sbjct: 25552 cgaacgtgttgctgctgcgaaga 25574
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>emb|BX950186.10| Zebrafish DNA sequence from clone CH211-103O18 in linkage group 15,
              complete sequence
          Length = 140307

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    atcttcccttttcagctcctt 448
              |||||||||||||||||||||
Sbjct: 137138 atcttcccttttcagctcctt 137118
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>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19,
             complete sequence
          Length = 147881

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 530   caagacaattgctttttcaat 550
             |||||||||||||||||||||
Sbjct: 75230 caagacaattgctttttcaat 75210
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>gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B23, complete sequence
          Length = 126010

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   caaactaccttattacaaata 188
             |||||||||||||||||||||
Sbjct: 45639 caaactaccttattacaaata 45659
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>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete
              sequence
          Length = 255824

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 530    caagacaattgctttttcaat 550
              |||||||||||||||||||||
Sbjct: 246931 caagacaattgctttttcaat 246911
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>ref|NM_203000.1| Arabidopsis thaliana unknown protein AT5G04220 transcript variant
          AT5G04220.2 mRNA, complete cds
          Length = 1999

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 29 ttgcataagagaaacaaaaa 48
          ||||||||||||||||||||
Sbjct: 35 ttgcataagagaaacaaaaa 16
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>ref|NM_120504.1| Arabidopsis thaliana unknown protein AT5G04220 transcript variant
          AT5G04220.1 mRNA, complete cds
          Length = 2026

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 29 ttgcataagagaaacaaaaa 48
          ||||||||||||||||||||
Sbjct: 36 ttgcataagagaaacaaaaa 17
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>ref|XM_527549.1| PREDICTED: Pan troglodytes similar to Sorting nexin 9 (SH3 and PX
            domain-containing protein 1) (SDP1 protein) (LOC472172),
            mRNA
          Length = 3948

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 3492 acaagacaaacagaacatgg 3511
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>gb|AC167559.2| Echinops telfairi, clone Echinops telfairi -24239157I1, complete
            sequence
          Length = 35266

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 24   gaaagttgcataagagaaacaaaa 47
            ||||||| ||||||||||||||||
Sbjct: 6676 gaaagtttcataagagaaacaaaa 6699
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>gb|AC116706.12| Mus musculus chromosome 1, clone RP23-37D15, complete sequence
          Length = 167357

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 428  atcttcccttttcagctcct 447
            ||||||||||||||||||||
Sbjct: 2214 atcttcccttttcagctcct 2195
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>ref|XM_322928.1| Neurospora crassa OR74A hypothetical protein ( (AL513444)
           hypothetical protein [Neurospora crassa OR74A]  )
           (NCU03627.1) partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 tggaatgaagaaaccaaggg 376
           ||||||||||||||||||||
Sbjct: 624 tggaatgaagaaaccaaggg 605
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>ref|XM_956261.1| Neurospora crassa OR74A hypothetical protein ( (AL513444)
           hypothetical protein [Neurospora crassa OR74A]  )
           (NCU03627.1) partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 tggaatgaagaaaccaaggg 376
           ||||||||||||||||||||
Sbjct: 624 tggaatgaagaaaccaaggg 605
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>gb|DQ492684.1| Homo sapiens heat shock transcription factor 2 (HSF2) gene,
           complete cds
          Length = 37258

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 385 aagatatatgtatacctcttccaa 408
           |||||||||||||| |||||||||
Sbjct: 755 aagatatatgtatatctcttccaa 732
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>ref|NM_016224.3| Homo sapiens sorting nexin 9 (SNX9), mRNA
          Length = 4200

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1766 acaagacaaacagaacatgg 1785
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>gb|DQ465384.1| Oreochromis mossambicus clone SSH #509 mitochondrial isocitrate
           dehydrogenase 2-like mRNA, complete cds; nuclear gene
           for mitochondrial product
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 494 acgaagacagagttgaagagtttg 517
           |||||| |||||||||||||||||
Sbjct: 423 acgaagccagagttgaagagtttg 446
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>gb|BC001084.2| Homo sapiens sorting nexin 9, mRNA (cDNA clone IMAGE:2958415),
           partial cds
          Length = 958

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  acaagacaaacagaacatgg 90
           ||||||||||||||||||||
Sbjct: 658 acaagacaaacagaacatgg 677
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>emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on chromosome 1 Contains the
             5' end of the SIL gene for TAL1 (SCL) interrupting locus,
             the 5' end of the  gene for UMP-CMP kinase (UMP-CMPK) and
             a CpG island, complete sequence
          Length = 68049

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 447   ttttgcctcaccttgtcatccctg 470
             ||||||||||||||||||| ||||
Sbjct: 54331 ttttgcctcaccttgtcattcctg 54354
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>gb|BT009742.1| Synthetic construct Homo sapiens sorting nexin 9 mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612
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>emb|AL133352.12| Human DNA sequence from clone RP11-411B6 on chromosome 10 Contains the 3'
              end of the WNT8B gene for wingless-type MMTV integration
              site family member 8B, the gene for secretory pathway
              component Sec31B-1 (SEC31B-1), the NDUFB8 gene for NADH
              dehydrogenase (ubiquinone) 1 beta subcomplex 8, 19kDa, the
              HIF1AN gene for hypoxia-inducible factor 1, alpha subunit
              inhibitor and four CpG islands, complete sequence
          Length = 157808

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    ccaaggggtgggggcaagat 389
              ||||||||||||||||||||
Sbjct: 149617 ccaaggggtgggggcaagat 149636
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>emb|AL121954.7|HSDJ506O9 Human DNA sequence from clone RP3-506O9 on chromosome 6q22.31-23.33
            Contains the 5' end of the HSF2 gene for heat shock
            transcription factor 2 and a  CpG island, complete
            sequence
          Length = 14185

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 385  aagatatatgtatacctcttccaa 408
            |||||||||||||| |||||||||
Sbjct: 9768 aagatatatgtatatctcttccaa 9745
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>emb|AL035634.7|HS403L10 Human DNA sequence from clone RP3-403L10 on chromosome 6q25.1-26
           Contains part of the SNX9 gene for sorting nexin 9 (SH3
           and PX domain-containing protein (SH3PX1, SDP1),
           FLJ22984), an HSPE1 (heat shock 10kD protein 1
           (chaperonin 10)) pseudogene and a novel gene, complete
           sequence
          Length = 60215

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  acaagacaaacagaacatgg 90
           ||||||||||||||||||||
Sbjct: 192 acaagacaaacagaacatgg 173
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>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2
             Contains GSSs and STSs, complete sequence
          Length = 125698

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   gaacatcttatcttcatttt 489
             ||||||||||||||||||||
Sbjct: 71949 gaacatcttatcttcatttt 71968
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>gb|AY059741.1| Arabidopsis thaliana At5g04220 mRNA sequence
          Length = 2042

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 29 ttgcataagagaaacaaaaa 48
          ||||||||||||||||||||
Sbjct: 36 ttgcataagagaaacaaaaa 17
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>gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, complete sequence
          Length = 169076

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    ttttctacgaagacagagtt 507
              ||||||||||||||||||||
Sbjct: 121247 ttttctacgaagacagagtt 121266
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>emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2
          Length = 99360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   tggaatgaagaaaccaaggg 376
             ||||||||||||||||||||
Sbjct: 52836 tggaatgaagaaaccaaggg 52817
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>emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BAC clone F21E1 (ESSA project)
          Length = 97451

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ttgcataagagaaacaaaaa 48
             ||||||||||||||||||||
Sbjct: 62389 ttgcataagagaaacaaaaa 62408
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>gb|BC005022.1| Homo sapiens sorting nexin 9, mRNA (cDNA clone MGC:12550
            IMAGE:3832234), complete cds
          Length = 2065

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1764 acaagacaaacagaacatgg 1783
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>dbj|AK127345.1| Homo sapiens cDNA FLJ45417 fis, clone BRHIP3033811, highly  similar
            to Sorting nexin 9
          Length = 3573

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1712 acaagacaaacagaacatgg 1731
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>gb|AF331667.1| Homo sapiens heat shock factor 2 (HSF2) gene, promoter sequence
          Length = 2651

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 385  aagatatatgtatacctcttccaa 408
            |||||||||||||| |||||||||
Sbjct: 1490 aagatatatgtatatctcttccaa 1467
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>gb|AF172847.1|AF172847 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds
          Length = 4175

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1737 acaagacaaacagaacatgg 1756
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>gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, complete sequence
          Length = 148917

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    ggggcaagatatatgtatac 399
              ||||||||||||||||||||
Sbjct: 137004 ggggcaagatatatgtatac 136985
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>dbj|AB168588.1| Macaca fascicularis testis cDNA clone: QtsA-13248, similar to human
            sorting nexin 9 (SNX9), mRNA, RefSeq: NM_016224.3
          Length = 2020

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1692 acaagacaaacagaacatgg 1711
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>gb|AF121859.1|AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds
          Length = 2271

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1617 acaagacaaacagaacatgg 1636
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>gb|AY028171.1| Leishmania donovani extra chromosome XC290, partial sequence
          Length = 44273

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gtgttgctgctgcgaagaaa 304
             ||||||||||||||||||||
Sbjct: 43345 gtgttgctgctgcgaagaaa 43364
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 389      tatatgtatacctcttccaa 408
                ||||||||||||||||||||
Sbjct: 17064494 tatatgtatacctcttccaa 17064513
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>gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, complete sequence
          Length = 159748

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 65    aaggcaacaagacaaacagaacatgggt 92
             |||||||||| || ||||||||||||||
Sbjct: 64518 aaggcaacaacaccaacagaacatgggt 64545
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>gb|AC021648.25| Homo sapiens 12 BAC RP11-255I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 128809

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   tggaatgaagaaaccaaggg 376
             ||||||||||||||||||||
Sbjct: 99271 tggaatgaagaaaccaaggg 99290
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>gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, complete sequence
          Length = 109840

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    ttttctacgaagacagagtt 507
              ||||||||||||||||||||
Sbjct: 101011 ttttctacgaagacagagtt 101030
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>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0016H06
          Length = 148158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    tatatgtatacctcttccaa 408
              ||||||||||||||||||||
Sbjct: 143905 tatatgtatacctcttccaa 143924
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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   tatatgtatacctcttccaa 408
             ||||||||||||||||||||
Sbjct: 17620 tatatgtatacctcttccaa 17639
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>gb|AY892413.1| Synthetic construct Homo sapiens clone FLH014894.01L sorting nexin 9
            (SNX9) mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612
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>gb|AY892412.1| Synthetic construct Homo sapiens clone FLH014893.01L sorting nexin 9
            (SNX9) mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612
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>dbj|AK026637.1| Homo sapiens cDNA: FLJ22984 fis, clone KAT11574, highly similar to
            AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA
          Length = 1699

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1402 acaagacaaacagaacatgg 1421
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>gb|AF131214.1|AF131214 Homo sapiens SH3 and PX domain-containing protein SH3PX1 (SH3PX1)
            mRNA, complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1636 acaagacaaacagaacatgg 1655
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>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence
          Length = 200174

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   atcttcccttttcagctcct 447
             ||||||||||||||||||||
Sbjct: 34195 atcttcccttttcagctcct 34214
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>gb|AF076957.1|AF076957 Homo sapiens SDP1 protein mRNA, complete cds
          Length = 1456

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 1077 acaagacaaacagaacatgg 1096
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>dbj|AB209736.1| Homo sapiens mRNA for sorting nexin 9 variant protein
          Length = 7717

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   acaagacaaacagaacatgg 90
            ||||||||||||||||||||
Sbjct: 3690 acaagacaaacagaacatgg 3709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,546,037
Number of Sequences: 3902068
Number of extensions: 7546037
Number of successful extensions: 129213
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129114
Number of HSP's gapped (non-prelim): 99
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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