| Clone Name | rbags29p15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039L03, full insert sequence Length = 1679 Score = 101 bits (51), Expect = 2e-18 Identities = 80/90 (88%) Strand = Plus / Minus Query: 343 cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402 ||||||||| ||||| || |||| |||||||||||||| |||||||||||||||||||| Sbjct: 1279 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 1220 Query: 403 ctctccaaagctggngaagataacggcaat 432 ||||||||||||| ||| ||||| ||||| Sbjct: 1219 ttctccaaagctggggaaaataaccgcaat 1190
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 3e-17 Identities = 75/84 (89%) Strand = Plus / Plus Query: 343 cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402 ||||||||| ||||| || |||| |||||||||||||| |||||||||||||||||||| Sbjct: 34640799 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 34640858 Query: 403 ctctccaaagctggngaagataac 426 ||||||||||||| ||| ||||| Sbjct: 34640859 ttctccaaagctggggaaaataac 34640882
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 97.6 bits (49), Expect = 3e-17 Identities = 75/84 (89%) Strand = Plus / Plus Query: 343 cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402 ||||||||| ||||| || |||| |||||||||||||| |||||||||||||||||||| Sbjct: 92816 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 92875 Query: 403 ctctccaaagctggngaagataac 426 ||||||||||||| ||| ||||| Sbjct: 92876 ttctccaaagctggggaaaataac 92899
>gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-162I7, complete sequence Length = 156542 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 gtgctgaagcccactcggcagc 194 |||||||||||||||||||||| Sbjct: 9122 gtgctgaagcccactcggcagc 9143
>gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, region 97A-97B, BAC clone BACR19L21, complete sequence Length = 162876 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ccttccctcggttttttatgg 157 ||||||||||||||||||||| Sbjct: 48462 ccttccctcggttttttatgg 48442
>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete sequence Length = 322332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ccttccctcggttttttatgg 157 ||||||||||||||||||||| Sbjct: 22309 ccttccctcggttttttatgg 22289
>gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome 15, complete sequence Length = 197376 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tgctgccctgcttgatgtgttatg 280 |||| ||||||||||||||||||| Sbjct: 1197 tgcttccctgcttgatgtgttatg 1220
>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence Length = 132267 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 agataacatacaacaactcatgat 132 ||||||||||||||| |||||||| Sbjct: 109896 agataacatacaacatctcatgat 109919
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence Length = 113836 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 agataacatacaacaactcatgat 132 ||||||||||||||| |||||||| Sbjct: 35372 agataacatacaacatctcatgat 35349
>emb|AL928596.5| Human DNA sequence from clone RP11-1037J10 on chromosome X, complete sequence Length = 64394 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 tttctacaatgctgccctgcttga 271 |||||||||| ||||||||||||| Sbjct: 38643 tttctacaatactgccctgcttga 38620
>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 128843 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 atgctagagatatatctctc 405 |||||||||||||||||||| Sbjct: 22320 atgctagagatatatctctc 22339
>emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3, COMPLETE SEQUENCE Length = 136080 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 agataacatacaacaactcatgat 132 ||||||||||||||| |||||||| Sbjct: 114721 agataacatacaacatctcatgat 114744
>emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22, complete sequence Length = 171896 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tgccagagcatttctacaat 257 |||||||||||||||||||| Sbjct: 171049 tgccagagcatttctacaat 171030
>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete sequence Length = 98432 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctacaatgctgccctgcttg 270 |||||||||||||||||||| Sbjct: 47257 ctacaatgctgccctgcttg 47238
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aggcagataacatacaacaa 124 |||||||||||||||||||| Sbjct: 16244252 aggcagataacatacaacaa 16244271
>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete sequence Length = 177253 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tgctgccctgcttgatgtgttatg 280 |||| ||||||||||||||||||| Sbjct: 90114 tgcttccctgcttgatgtgttatg 90137
>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15 Length = 112406 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctacaatgctgccctgcttg 270 |||||||||||||||||||| Sbjct: 104702 ctacaatgctgccctgcttg 104683
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aggcagataacatacaacaa 124 |||||||||||||||||||| Sbjct: 16197485 aggcagataacatacaacaa 16197504
>emb|BX672566.2|CNS09SC4 Oryza sativa chromosome 12, . Partial sequence from BAC B1004E12 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 24190 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aggcagataacatacaacaa 124 |||||||||||||||||||| Sbjct: 14107 aggcagataacatacaacaa 14126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,468,923 Number of Sequences: 3902068 Number of extensions: 3468923 Number of successful extensions: 59557 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59478 Number of HSP's gapped (non-prelim): 79 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)