ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29p15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-16... 44 0.37
5gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, r... 42 1.5
6gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94... 42 1.5
7gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome... 40 5.8
8gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete s... 40 5.8
9gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete s... 40 5.8
10emb|AL928596.5| Human DNA sequence from clone RP11-1037J10 on ch... 40 5.8
11emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on ch... 40 5.8
12emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3... 40 5.8
13emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22,... 40 5.8
14gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map... 40 5.8
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
16gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosom... 40 5.8
17dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.8
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
19emb|BX672566.2|CNS09SC4 Oryza sativa chromosome 12, . Partial se... 40 5.8

>dbj|AK065664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039L03, full
            insert sequence
          Length = 1679

 Score =  101 bits (51), Expect = 2e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 343  cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402
            ||||||||| ||||| || ||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 1279 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 1220

                                          
Query: 403  ctctccaaagctggngaagataacggcaat 432
             ||||||||||||| ||| ||||| |||||
Sbjct: 1219 ttctccaaagctggggaaaataaccgcaat 1190



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                            
Query: 343      cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402
                ||||||||| ||||| || ||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 34640799 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 34640858

                                        
Query: 403      ctctccaaagctggngaagataac 426
                 ||||||||||||| ||| |||||
Sbjct: 34640859 ttctccaaagctggggaaaataac 34640882



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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                         
Query: 343   cttcctcatccttcgaacggagttgtatatcggacggaacaaaatgctagagatatatct 402
             ||||||||| ||||| || ||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 92816 cttcctcattcttcggaccgagtcatatatcggacggaataaaatgctagagatatatct 92875

                                     
Query: 403   ctctccaaagctggngaagataac 426
              ||||||||||||| ||| |||||
Sbjct: 92876 ttctccaaagctggggaaaataac 92899



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>gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-162I7, complete sequence
          Length = 156542

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 173  gtgctgaagcccactcggcagc 194
            ||||||||||||||||||||||
Sbjct: 9122 gtgctgaagcccactcggcagc 9143



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>gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, region 97A-97B, BAC clone
             BACR19L21, complete sequence
          Length = 162876

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   ccttccctcggttttttatgg 157
             |||||||||||||||||||||
Sbjct: 48462 ccttccctcggttttttatgg 48442



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>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the
             complete sequence
          Length = 322332

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   ccttccctcggttttttatgg 157
             |||||||||||||||||||||
Sbjct: 22309 ccttccctcggttttttatgg 22289



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>gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome 15, complete
            sequence
          Length = 197376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 257  tgctgccctgcttgatgtgttatg 280
            |||| |||||||||||||||||||
Sbjct: 1197 tgcttccctgcttgatgtgttatg 1220



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>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence
          Length = 132267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    agataacatacaacaactcatgat 132
              ||||||||||||||| ||||||||
Sbjct: 109896 agataacatacaacatctcatgat 109919



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>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence
          Length = 113836

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   agataacatacaacaactcatgat 132
             ||||||||||||||| ||||||||
Sbjct: 35372 agataacatacaacatctcatgat 35349



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>emb|AL928596.5| Human DNA sequence from clone RP11-1037J10 on chromosome X, complete
             sequence
          Length = 64394

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   tttctacaatgctgccctgcttga 271
             |||||||||| |||||||||||||
Sbjct: 38643 tttctacaatactgccctgcttga 38620



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>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 128843

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   atgctagagatatatctctc 405
             ||||||||||||||||||||
Sbjct: 22320 atgctagagatatatctctc 22339



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>emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3, COMPLETE SEQUENCE
          Length = 136080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    agataacatacaacaactcatgat 132
              ||||||||||||||| ||||||||
Sbjct: 114721 agataacatacaacatctcatgat 114744



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>emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22, complete sequence
          Length = 171896

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    tgccagagcatttctacaat 257
              ||||||||||||||||||||
Sbjct: 171049 tgccagagcatttctacaat 171030



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>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete
             sequence
          Length = 98432

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ctacaatgctgccctgcttg 270
             ||||||||||||||||||||
Sbjct: 47257 ctacaatgctgccctgcttg 47238



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 105      aggcagataacatacaacaa 124
                ||||||||||||||||||||
Sbjct: 16244252 aggcagataacatacaacaa 16244271



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>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete
             sequence
          Length = 177253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   tgctgccctgcttgatgtgttatg 280
             |||| |||||||||||||||||||
Sbjct: 90114 tgcttccctgcttgatgtgttatg 90137



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>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15
          Length = 112406

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ctacaatgctgccctgcttg 270
              ||||||||||||||||||||
Sbjct: 104702 ctacaatgctgccctgcttg 104683



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 105      aggcagataacatacaacaa 124
                ||||||||||||||||||||
Sbjct: 16197485 aggcagataacatacaacaa 16197504



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>emb|BX672566.2|CNS09SC4 Oryza sativa chromosome 12, . Partial sequence from BAC B1004E12 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 24190

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aggcagataacatacaacaa 124
             ||||||||||||||||||||
Sbjct: 14107 aggcagataacatacaacaa 14126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,468,923
Number of Sequences: 3902068
Number of extensions: 3468923
Number of successful extensions: 59557
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59478
Number of HSP's gapped (non-prelim): 79
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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