ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29p09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 106 6e-23
2CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 94 3e-19
3CALX_PEA (O82709) Calnexin homolog precursor 92 1e-18
4CALX1_ARATH (P29402) Calnexin homolog 1 precursor 83 8e-16
5CALX_HELTU (Q39994) Calnexin homolog precursor 79 8e-15
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 2.0
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.5
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.5

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score =  106 bits (264), Expect = 6e-23
 Identities = 51/91 (56%), Positives = 61/91 (67%)
 Frame = -2

Query: 629 EKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIE 450
           E TWKPKF V              S+ +S FQKK+F +LYKIADIPFL  +K KI DLIE
Sbjct: 407 ETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIE 466

Query: 449 KGEKQPNITISILASVAVILVTVLFRTIFGG 357
           K EKQPN+TI IL +V V+ V++ FR IFGG
Sbjct: 467 KAEKQPNLTIGILVAVVVVFVSIFFRLIFGG 497



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 45/112 (40%), Positives = 64/112 (57%)
 Frame = -2

Query: 629 EKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIE 450
           + TWKPKF V             E++ L  +QKK+F +LYK+ADI FL  YK KI++LIE
Sbjct: 400 QSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIE 459

Query: 449 KGEKQPNITISILASVAVILVTVLFRTIFGGXXXXXXXXXXXXXXXPSATEA 294
           K E QPN+TI +L S+ ++ +++ F+ IFGG                S +EA
Sbjct: 460 KAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKVEKKKPETAAETSTSEA 511



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
 Frame = -2

Query: 629 EKTWKPKFVVXXXX------XXXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIK 468
           E TWKPKF +                   ESE ++  QKK F +LYKIADI FL   K K
Sbjct: 406 ETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLLYKIADIAFLSGQKEK 465

Query: 467 IIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 357
           II++IEKGEKQPN+TI I+ SV ++ V++ FR IFGG
Sbjct: 466 IIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGG 502



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 37/91 (40%), Positives = 55/91 (60%)
 Frame = -2

Query: 629 EKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIE 450
           + TWKPKF V              ++ L  +QK +F +L K+AD+ FL  YK KI +LIE
Sbjct: 398 QTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIE 457

Query: 449 KGEKQPNITISILASVAVILVTVLFRTIFGG 357
           K E+QPN+TI +L ++ V+  ++  + IFGG
Sbjct: 458 KAEQQPNLTIGVLVAIVVVFFSLFLKLIFGG 488



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 33/66 (50%), Positives = 50/66 (75%)
 Frame = -2

Query: 554 EDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLF 375
           + L   QK +F VLYKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L 
Sbjct: 426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILL 485

Query: 374 RTIFGG 357
           + +FGG
Sbjct: 486 KLLFGG 491



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -1

Query: 414 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 289
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 405 SCCHPCYCALQNHFRWQEGSGTCEARCC 322
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 390 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 295
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,101,301
Number of Sequences: 219361
Number of extensions: 1065650
Number of successful extensions: 3273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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