| Clone Name | rbags29p07 |
|---|---|
| Clone Library Name | barley_pub |
>PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 246 Score = 279 bits (714), Expect = 5e-75 Identities = 125/153 (81%), Positives = 147/153 (96%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 DD+LKE INFTLHYIADLDIPIKRGTFIEFR+GM+NVSPIGRNCSQEERD+FE+YDKV N Sbjct: 94 DDKLKELINFTLHYIADLDIPIKRGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQN 153 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKG 332 +RPKMV+ LRE+FAHLNLTFSIGGQISFDVFP+GWDKTYCL+YLE+F EIHFFGDKTY+G Sbjct: 154 IRPKMVAELRERFAHLNLTFSIGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEG 213 Query: 331 GNDHEIFESDRTVGHTVTSPNDTVQQCKSIFLS 233 GND+EI+ES +T+GH+VTSP+DTV +CK++F+S Sbjct: 214 GNDYEIYESPKTIGHSVTSPDDTVAKCKALFMS 246
>PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 257 Score = 221 bits (564), Expect = 1e-57 Identities = 100/153 (65%), Positives = 127/153 (83%), Gaps = 2/153 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 +++ ++ +NF LHYIADLDIP+KRGTFIEFR+GMIN+SP+GRN + EER++FE++DK Sbjct: 103 EEKYQKLVNFCLHYIADLDIPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRK 162 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R MV VLREKF LTFSIGGQISFDVFP GWDKTYCL+++E+ F IHFFGDKTY Sbjct: 163 IRATMVDVLREKFKDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTY 222 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 KGGND+EIF RT+GH+VT+P+DT+ + K IF Sbjct: 223 KGGNDYEIFVDPRTIGHSVTNPDDTIAELKKIF 255
>PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 252 Score = 204 bits (519), Expect = 2e-52 Identities = 89/153 (58%), Positives = 122/153 (79%), Gaps = 2/153 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 +++ + + F L Y++D+D+PI+RGTFIEFR+GMINVSPIGRN S +ER+D+EK+DK H+ Sbjct: 97 NEKYNKLVKFILRYLSDIDLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHH 156 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R MV L+++F LT+SIGGQISFDVFP GWDKTYCL+++E+ F+ IHFFGDK+Y Sbjct: 157 IRETMVEALKKEFPDFGLTYSIGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSY 216 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 KGGND+EI+ RT+GH V SP+DT++ F Sbjct: 217 KGGNDYEIYNDPRTIGHAVNSPDDTIRILNETF 249
>PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 201 bits (511), Expect = 2e-51 Identities = 91/146 (62%), Positives = 118/146 (80%), Gaps = 3/146 (2%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 ++ +K FINF L Y+++LD+PIKRGTFIEFR+GM+NV PIGR C++EER+ F +YD H Sbjct: 99 EETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHK 158 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE---EFKEIHFFGDKT 341 VR KM+ L+++FA ++LT+SIGGQISFDVFP GWDKTYCLR++E +FKEIHFFGDKT Sbjct: 159 VREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKT 218 Query: 340 YKGGNDHEIFESDRTVGHTVTSPNDT 263 GGND+EI+ RT+ H V +P DT Sbjct: 219 EPGGNDYEIYSDPRTISHRVYTPKDT 244
>PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 200 bits (509), Expect = 3e-51 Identities = 91/153 (59%), Positives = 121/153 (79%), Gaps = 2/153 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 +++ + F L Y++++D+P +RGTF+EFR+GMINVSPIGRN S EER++FE+YDK H Sbjct: 100 EEKYNKLAVFILRYLSEIDLPKRRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQ 159 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R K V L+++F LTFSIGGQISFDVFP GWDKTYCL+++E+ FKEIHFFGDKT Sbjct: 160 IRAKFVEALKKEFPDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTM 219 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 GGND+EIF +RT+GH+V SP+DTV+ +F Sbjct: 220 VGGNDYEIFVDERTIGHSVQSPDDTVKILTELF 252
>PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 245 Score = 199 bits (505), Expect = 9e-51 Identities = 91/151 (60%), Positives = 114/151 (75%), Gaps = 1/151 (0%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 D +L+E INF L Y++D+ +P+KRG F+EFR+GMIN+SPIGR+CSQEER F ++DK H Sbjct: 90 DAKLQELINFALRYMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHG 149 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-EEFKEIHFFGDKTYK 335 +R K LREKF L F+IGGQIS DVFP GWDKT+CL+YL +F IHFFGDKT Sbjct: 150 IRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAP 209 Query: 334 GGNDHEIFESDRTVGHTVTSPNDTVQQCKSI 242 GGNDHEIF +RTVGHTV P DT + +++ Sbjct: 210 GGNDHEIFADERTVGHTVEGPEDTRKHVENV 240
>PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 242 Score = 199 bits (505), Expect = 9e-51 Identities = 94/153 (61%), Positives = 121/153 (79%), Gaps = 2/153 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 +D +++ IN+ L YIA++ +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK + Sbjct: 89 EDVIQDLINYCLSYIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEH 148 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R K V+ LR++FA LTFSIGGQIS DVFP+GWDK YCLR+LE +K I+FFGDKT Sbjct: 149 IRQKFVADLRKEFAGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTM 208 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 GGNDHEIF RTVG+TVT+P DT + C+ +F Sbjct: 209 PGGNDHEIFTDPRTVGYTVTAPEDTRRICEGLF 241
>PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 196 bits (498), Expect = 6e-50 Identities = 93/150 (62%), Positives = 118/150 (78%), Gaps = 2/150 (1%) Frame = -3 Query: 682 LKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRP 503 +++ IN+ L YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R Sbjct: 96 IQDLINYCLSYIAKVKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQ 155 Query: 502 KMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGG 329 K V+ LR++FA LTFSIGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GG Sbjct: 156 KFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGG 215 Query: 328 NDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 NDHEIF RTVG++VT+P DT + C+ +F Sbjct: 216 NDHEIFTDPRTVGYSVTAPEDTRRICEELF 245
>PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 194 bits (494), Expect = 2e-49 Identities = 92/150 (61%), Positives = 118/150 (78%), Gaps = 2/150 (1%) Frame = -3 Query: 682 LKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRP 503 +++ IN+ L YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R Sbjct: 96 IQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQ 155 Query: 502 KMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGG 329 K V+ LR++FA LTFSIGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GG Sbjct: 156 KFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGG 215 Query: 328 NDHEIFESDRTVGHTVTSPNDTVQQCKSIF 239 NDHEIF RT+G++VT+P DT + C+ +F Sbjct: 216 NDHEIFTDPRTMGYSVTAPEDTRRICELLF 245
>PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (PMMH-22)| Length = 262 Score = 184 bits (468), Expect = 2e-46 Identities = 89/156 (57%), Positives = 113/156 (72%), Gaps = 2/156 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 ++ L++ INF L Y+A L +P KRGTFIEFR+GM+N+SPIGR+C+ EER +F + DK Sbjct: 102 EELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEK 161 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R K V L+ +FA L FS GG ISFDVFP+GWDK YCL L++ F IHFFG++T Sbjct: 162 IREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETS 221 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIFLSE 230 GGND EIF RTVGH+V SP DTVQ+C+ IF E Sbjct: 222 PGGNDFEIFADPRTVGHSVVSPQDTVQRCREIFFPE 257
>PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1)| Length = 262 Score = 183 bits (465), Expect = 4e-46 Identities = 89/156 (57%), Positives = 113/156 (72%), Gaps = 2/156 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 ++ L++ INF L Y+A L +P KRGTFIEFR+GM+NVSPIGR+C+ EER +F + DK Sbjct: 102 EELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEK 161 Query: 511 VRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTY 338 +R K V L+ +FA L FS GG ISFDVFP+GWDK YCL L+E F IHFFG++T Sbjct: 162 IREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETS 221 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIFLSE 230 GGND EI+ RTVGH+V SP DTVQ+C+ +F E Sbjct: 222 PGGNDFEIYADPRTVGHSVVSPQDTVQRCRELFFPE 257
>PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8)| Length = 246 Score = 152 bits (383), Expect = 1e-36 Identities = 72/152 (47%), Positives = 99/152 (65%), Gaps = 2/152 (1%) Frame = -3 Query: 691 DDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHN 512 + +L++ + F L YIADLDIP KRGTFIE R +IN+ P GRNCS +R F +YD +H+ Sbjct: 91 ETKLRKMVEFCLRYIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHH 150 Query: 511 VRPKMVSVLREKF--AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTY 338 VR K++ VL+ +F L+F GGQIS DV+P+ W K+ L ++ + IHFFGD T Sbjct: 151 VRQKLIQVLKSQFDSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTR 210 Query: 337 KGGNDHEIFESDRTVGHTVTSPNDTVQQCKSI 242 +GGND EI+ +GHTVT D V Q + + Sbjct: 211 EGGNDFEIYNHPDVIGHTVTGYKDLVNQLEEL 242
>Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1| Length = 387 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -3 Query: 658 LHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNV 509 LH I + +P K G +++ G +NVS + RN +DD+EK+ + NV Sbjct: 88 LHEI-EQSLPAKSGRYLQIILGDVNVSILNRNDKVRYKDDYEKFKLILNV 136
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface| antigen) (721P) (Protein XE7) Length = 695 Score = 33.1 bits (74), Expect = 0.82 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -3 Query: 538 FEKYDKVHNVRPKMVSVLREKFAHLNL-TFSIGGQISFDVFPQ 413 FEK+ ++ NV M+ RE+ N TFS GG ++F+ + Q Sbjct: 178 FEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQ 220
>EA31_LAMBD (P03753) Protein ea31| Length = 296 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = -3 Query: 607 EFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVS---VLREKFAHLNLTFSIGGQ 437 EF IN+ P R+C+ E+ D+VH + RE++ + N G Sbjct: 131 EFSVMPINLVPSCRDCNMGEKGQVFAVDEVHQAIHPYIDKDIFFREQWVYANFVSGTPGA 190 Query: 436 ISFDV-FPQGWDKTYCLRYLEEFK 368 ISF V P W + R L FK Sbjct: 191 ISFYVECPANWRQEDKHRALHHFK 214
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 32.3 bits (72), Expect = 1.4 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Frame = -3 Query: 535 EKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE----EFK 368 EK D ++ K + K HL T ++ G IS + FP + CLR+L+ + K Sbjct: 1375 EKLDLENSRHLKNLPTSIYKLKHLE-TLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433 Query: 367 EIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 269 E+ +Y D +F R VT+PN Sbjct: 1434 ELP--SSISYLTALDELLFVDSRRNSPVVTNPN 1464
>YT72_CAEEL (Q11086) Hypothetical protein C01C10.2| Length = 204 Score = 29.6 bits (65), Expect = 9.1 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 26/109 (23%) Frame = -3 Query: 466 LNLTFSIGGQISFDVFPQ--------GWDKT------YCLRYLEEFKEIHFFGDKTY--- 338 LNLTFS +IS DVF Q W + Y + Y+++ E+ F D + Sbjct: 13 LNLTFSPKSEISEDVFKQMFSSLDRLWWSRLVISIRGYVINYVQQNDEVLFSCDDAFIKI 72 Query: 337 ------KGGNDHEIFESDRTVGHTVTSPNDTVQQC---KSIFLSE*SPD 218 + + FE + H + N +Q KSI ++ SP+ Sbjct: 73 HQKLAERNSQFEDAFEYLTAIFHVIREKNTLIQMISNPKSISTTKISPN 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,269,946 Number of Sequences: 219361 Number of extensions: 2391997 Number of successful extensions: 6257 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5976 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6246 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)