ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29o13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein 51 4e-06
2SGN1_YEAST (P40561) RNA-binding protein SGN1 50 6e-06
3PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin... 48 2e-05
4GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 48 2e-05
5NOP12_YARLI (Q6C2Q7) Nucleolar protein 12 48 2e-05
6YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4 48 2e-05
7YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12 48 2e-05
8GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 47 5e-05
9NOP12_CANGA (Q6FUS6) Nucleolar protein 12 47 7e-05
10NOP12_KLULA (Q6CKV6) Nucleolar protein 12 47 7e-05
11GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 45 1e-04
12GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 45 1e-04
13NOP12_ASHGO (Q75BJ7) Nucleolar protein 12 45 1e-04
14NUCL_XENLA (P20397) Nucleolin (Protein C23) 45 2e-04
15NOP12_YEAST (Q08208) Nucleolar protein 12 45 2e-04
16NUCL_CHICK (P15771) Nucleolin (Protein C23) 45 3e-04
17RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p... 45 3e-04
18GAR2_SCHPO (P41891) Protein gar2 44 3e-04
19PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi... 44 4e-04
20PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi... 44 4e-04
21GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment) 44 4e-04
22PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 44 4e-04
23PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi... 44 4e-04
24NUCL_MACFA (Q4R4J7) Nucleolin 44 6e-04
25NUCL_HUMAN (P19338) Nucleolin (Protein C23) 44 6e-04
26NUCL_RAT (P13383) Nucleolin (Protein C23) 44 6e-04
27NUCL_PONPY (Q5RF26) Nucleolin 44 6e-04
28NUCL_MOUSE (P09405) Nucleolin (Protein C23) 44 6e-04
29NUCL_MESAU (P08199) Nucleolin (Protein C23) 44 6e-04
30PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 44 6e-04
31PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 44 6e-04
32ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 43 7e-04
33HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 43 0.001
34HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn... 43 0.001
35HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 43 0.001
36HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 43 0.001
37GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro... 43 0.001
38ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ... 42 0.001
39PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 42 0.001
40PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 42 0.001
41PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 42 0.001
42GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 42 0.002
43PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 42 0.002
44PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g... 42 0.002
45RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p... 41 0.003
46RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro... 41 0.003
47RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 41 0.004
48RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 41 0.004
49RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 40 0.005
50PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 40 0.006
51RNP24_SCHPO (Q09100) RNA-binding protein rnp24 40 0.006
52RSD1_SCHPO (O13845) RNA-binding protein rsd1 40 0.008
53RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 40 0.008
54YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i... 40 0.008
55MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote... 40 0.008
56RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 40 0.008
57DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1 39 0.011
58SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 39 0.014
59MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote... 39 0.018
60YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i... 38 0.024
61RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi) 38 0.024
62RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 38 0.031
63ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 38 0.031
64RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 38 0.031
65MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156) 37 0.040
66MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote... 37 0.040
67MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote... 37 0.040
68ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 37 0.040
69NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 37 0.040
70MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2) 37 0.040
71IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s... 37 0.053
72IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s... 37 0.053
73SXL_CHRRU (O97018) Sex-lethal homolog 37 0.053
74DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp... 37 0.069
75DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 37 0.069
76DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp... 37 0.069
77DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote... 36 0.090
78DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote... 36 0.090
79HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4... 36 0.12
80NOP12_SCHPO (O13741) Nucleolar protein 12 36 0.12
81RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 36 0.12
82SXL_MUSDO (O17310) Sex-lethal homolog 36 0.12
83CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine... 35 0.15
84CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine... 35 0.15
85RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 35 0.15
86MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa... 35 0.20
87SCE3_SCHPO (O14369) Probable RNA-binding protein sce3 35 0.20
88MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 35 0.20
89NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 35 0.20
90PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 35 0.20
91PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 35 0.20
92HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2... 35 0.20
93IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R... 34 0.34
94CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r... 34 0.34
95CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine... 34 0.34
96CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine... 34 0.34
97MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 34 0.34
98MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 34 0.45
99ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1 34 0.45
100MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 34 0.45
101TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43) 34 0.45
102MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote... 33 0.58
103CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine... 33 0.58
104DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 33 0.58
105CPB1_CAERE (Q6E3C9) Cytoplasmic polyadenylation element-binding ... 33 0.76
106HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn... 33 0.76
107HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (... 33 0.76
108PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 33 0.76
109MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote... 33 0.76
110HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (... 33 1.00
111YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ... 33 1.00
112TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43) 33 1.00
113TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran... 33 1.00
114TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr... 33 1.00
115TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr... 33 1.00
116YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 32 1.3
117TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 32 1.3
118MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote... 32 1.3
119TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 32 1.3
120FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei... 32 1.3
121FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei... 32 1.3
122SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli... 32 1.7
123SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp... 32 1.7
124SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp... 32 1.7
125SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp... 32 1.7
126RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 32 1.7
127SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp... 32 1.7
128SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35) 32 2.2
129RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 31 2.9
130MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote... 31 2.9
131RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 31 2.9
132RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2 31 3.8
133RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2 31 3.8
134MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash... 31 3.8
135MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa... 31 3.8
136MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa... 31 3.8
137RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1 30 4.9
138RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1 30 4.9
139RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1 30 4.9
140RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1 30 4.9
141RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1 30 4.9
142RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain... 30 4.9
143NOP12_NEUCR (Q7S2L7) Nucleolar protein 12 30 6.5
144IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 9... 30 6.5
145ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E... 30 6.5
146ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 30 6.5
147ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 30 8.4 
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           SL++ FS+ G+IT   +  D E G S+G  ++ F DE S   A+E ++G +L G N+ V 
Sbjct: 21  SLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVN 80

Query: 426 EAKPKG 409
           EA+ +G
Sbjct: 81  EAQSRG 86
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>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCN 439
           D     +++HF  CG+I R+++  D   G  KG  Y++F   +   KAL+L+G +L G  
Sbjct: 74  DVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKK 133

Query: 438 LYVAEAK 418
           + V+  +
Sbjct: 134 IAVSRKR 140
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>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/69 (39%), Positives = 38/69 (55%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SV+V   D S   +     LQ HF+ CG + RV++  D   G  KG AY++F++ S    
Sbjct: 56  SVYVGNVDYSVTPE----ELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 111

Query: 477 ALELSGSDL 451
           AL L+GS L
Sbjct: 112 ALLLNGSML 120
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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           SL+  FS+ GE+    +  D E G S+G  ++ F DE S   A+E ++G DL G ++ V 
Sbjct: 23  SLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82

Query: 426 EAKPKG 409
           EA+ +G
Sbjct: 83  EAQSRG 88
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>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 37/68 (54%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           VFV   D  +QE+    SL E FS CG++  V +  D +    KG AY+ F D +S  +A
Sbjct: 276 VFVGALDFEEQEE----SLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQA 331

Query: 474 LELSGSDL 451
           L L+G  +
Sbjct: 332 LLLNGKGI 339
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>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVF+   D +   + I    +EHF  CG+I + ++P D      K  AY++F D SS   
Sbjct: 102 SVFIGNVDFNSTIEEI----EEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIEN 157

Query: 477 ALELSGS 457
           AL ++GS
Sbjct: 158 ALVMNGS 164
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>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVF+   D +   + +    +EHF  CG I R ++P D      K  AY++F D SS   
Sbjct: 62  SVFIGNVDFNSTIEEV----EEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIEN 117

Query: 477 ALELSGS 457
           AL ++GS
Sbjct: 118 ALVMNGS 124
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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  FS+ GE+    +  D E G S+G  ++ F DE S   A+E ++G DL G ++ V 
Sbjct: 23  ALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82

Query: 426 EAKPKG 409
           EA+ +G
Sbjct: 83  EAQSRG 88
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>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 28/80 (35%), Positives = 40/80 (50%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVFV   D  + E+    SL +HF  CG I  V +  D +    KG AY+ F +  S SK
Sbjct: 229 SVFVGNLDFEEDEE----SLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSK 284

Query: 477 ALELSGSDLGGCNLYVAEAK 418
           AL L+   +   N ++ + K
Sbjct: 285 ALLLNEKPMISQNEHLKKRK 304
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>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 27/64 (42%), Positives = 34/64 (53%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVFV   D  + E+    SL +HF  CG+I  V +  D +    KG AY+ F D  S SK
Sbjct: 360 SVFVGNLDFEEVEE----SLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSK 415

Query: 477 ALEL 466
           AL L
Sbjct: 416 ALLL 419
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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYV 430
           + L+  FS+ GE+    +  D E G S+G  ++ F DE S   A+ E++G +L G  + V
Sbjct: 20  AELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITV 79

Query: 429 AEAKPKG 409
            EA+ +G
Sbjct: 80  NEAQSRG 86
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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           SL+  F+  GEI    V  D E G S+G  ++ F+ E+S   A+E ++G +L G N+ V 
Sbjct: 23  SLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVN 82

Query: 426 EAKPKG 409
           +A+ +G
Sbjct: 83  QAQSRG 88
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>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12|
          Length = 426

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVFV   D  + E+    SL +HF  CG I  V +  D +    KG AY+ F D  S +K
Sbjct: 260 SVFVGNLDFEESEE----SLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNK 315

Query: 477 ALELS 463
           AL L+
Sbjct: 316 ALLLN 320
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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 44/80 (55%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           LS+F+   +S+++ D ++ +L+E FSK     +     D   G SK   Y+DF+ E    
Sbjct: 232 LSIFIGNLNSTKEFDELKDALREFFSK-----KNLTIQDIRIGNSKKFGYVDFSSEEEVE 286

Query: 480 KALELSGSDLGGCNLYVAEA 421
           KAL+L+G  + G  + + +A
Sbjct: 287 KALKLTGKKILGTEVKIEKA 306



 Score = 37.4 bits (85), Expect = 0.040
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVK    S   +     LQE F    +I R+    D   G++KGIAY++F++E   
Sbjct: 323 SRTLFVKNIPYSTTVE----ELQEIFENAKDI-RIPTGKD---GSNKGIAYVEFSNEDEA 374

Query: 483 SKAL-ELSGSDLGGCNLYVAEAKPKGQ 406
           +KAL E  G+++ G +++V     K Q
Sbjct: 375 NKALEEKQGAEIEGRSIFVDFTGEKSQ 401



 Score = 37.0 bits (84), Expect = 0.053
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FV+G      ED    +L+E F   G +    +  D + GASKG  ++DF+     
Sbjct: 501 SKTLFVRGLS----EDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDA 553

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKG 409
             A E +   ++ G  + +  AKPKG
Sbjct: 554 KAAKEAMEDGEIDGNKVTLDFAKPKG 579
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>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/65 (38%), Positives = 35/65 (53%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           S+FV   D  + E+    SL +HF  CG+I  V +  D +    KG AY+ F D  S +K
Sbjct: 280 SIFVGNLDFEEIEE----SLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNK 335

Query: 477 ALELS 463
           AL L+
Sbjct: 336 ALLLN 340
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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCG-EITRVSVPMDHENGASKGIAYMDFTDESS 487
           + S+FVK    ++  + +R++++E F K   +++ V +      G+SK   Y+DF     
Sbjct: 280 AFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI------GSSKRFGYVDFLSAED 333

Query: 486 FSKALELSGSDLGGCNLYVAEAKPK 412
             KAL+L+G  L G  + + +AK K
Sbjct: 334 MDKALQLNGKKLMGLEIKLEKAKSK 358



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FV+G      E+ +R S +   S         +  D + G+SKG  ++DF+     
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEGSIS-------ARIVTDRDTGSSKGFGFVDFSSPEDA 604

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 605 KAAKEAMEDGEIDGNKVTLDFAKPKGE 631



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           ++FVK       ED +++     F    E+  V     ++ G+SKG+AY++F  E+   K
Sbjct: 372 TLFVKNLPYRVTEDEMKNV----FENALEVRLVL----NKEGSSKGMAYIEFKTEAEAEK 423

Query: 477 AL-ELSGSDLGGCNLYVAEAKPKGQ 406
           AL E  G+++ G  + +     K Q
Sbjct: 424 ALEEKQGTEVDGRAMVIDYTGEKSQ 448
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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 29/82 (35%), Positives = 39/82 (47%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVFV       +E AI    ++HF  CG I  V +  D   G  KG  Y+ F +  S   
Sbjct: 288 SVFVGNLPYKVEESAI----EKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343

Query: 477 ALELSGSDLGGCNLYVAEAKPK 412
           AL+L+ S+L G  L V  +  K
Sbjct: 344 ALKLNNSELMGRKLRVMRSVNK 365
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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +VFV     +  ED + ++    F  CG+I  + +P D ++G  KG  Y+ F+D  S  K
Sbjct: 367 TVFVGNLSFNATEDDLSTA----FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422

Query: 477 ALELSGSDLGG 445
            +E++G  + G
Sbjct: 423 CVEMNGHFIAG 433



 Score = 32.7 bits (73), Expect = 1.00
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGS 457
           L + F + G I    V MD ++G SKG  Y+DF    +   A+  +G+
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
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>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -1

Query: 615 AIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNL 436
           A    L+ HF  CG + RV++  D  +G  KG AY++F+D+ S   +L L  S   G  +
Sbjct: 182 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 241

Query: 435 YV 430
            V
Sbjct: 242 KV 243
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>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -1

Query: 615 AIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNL 436
           A    L+ HF  CG + RV++  D  +G  KG AY++F+D+ S   +L L  S   G  +
Sbjct: 182 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 241

Query: 435 YV 430
            V
Sbjct: 242 KV 243
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>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           +SL   FS  GE+    + +D E   S+G  ++ F+ E +   A+E ++G +L G N+ V
Sbjct: 1   NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60

Query: 429 AEAKPKG 409
            EA+ +G
Sbjct: 61  NEAQSRG 67
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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ++     L+E F K G    V V  D +NG SKG  ++ F       K
Sbjct: 192 NVYIKNFGDDMNDER----LKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G D+ G +++V  A+ K
Sbjct: 247 AVDEMNGKDMNGKSMFVGRAQKK 269
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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -1

Query: 615 AIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNL 436
           A    L+ HF  CG + RV++  D  +G  KG AY++F+D+ S   +L L  S   G  +
Sbjct: 178 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 237

Query: 435 YV 430
            V
Sbjct: 238 KV 239
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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      ED    +L+E F   G + R  +  D E G+SKG  ++DF  E   
Sbjct: 571 SKTLFVKGLS----EDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 623

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPKGE 650



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
 Frame = -1

Query: 645 KGFDSSQQEDA------------IRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF 502
           KG DS ++ DA             +  L+E F    EI  VS     ++G SKGIAY++F
Sbjct: 382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEF 436

Query: 501 TDESSFSKAL-ELSGSDLGGCNLYVAEAKPKGQ 406
             E+   K   E  G+++ G ++ +     KGQ
Sbjct: 437 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQ 469



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           + ++FV   + ++    +++ + + F+K  ++  V V +    G ++   Y+DF      
Sbjct: 306 AFNLFVGNLNFNKSAPELKTGISDVFAK-NDLAVVDVRI----GMTRKFGYVDFESAEDL 360

Query: 483 SKALELSGSDLGGCNLYVAEAKPKGQ 406
            KALEL+G  + G  + +   KPKG+
Sbjct: 361 EKALELTGLKVFGNEIKL--EKPKGK 384



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = -1

Query: 633 SSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSD 454
           S+    A   +LQE F K    T + VP + +NG SKG A+++F   +SF  A E     
Sbjct: 491 SNLSYSATEETLQEVFEKA---TFIKVPQN-QNGKSKGYAFIEF---ASFEDAKEA---- 539

Query: 453 LGGCN 439
           L  CN
Sbjct: 540 LNSCN 544
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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      ED    +L+E F   G + R  +  D E G+SKG  ++DF  E   
Sbjct: 570 SKTLFVKGLS----EDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 622

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWAKPKGE 649



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
 Frame = -1

Query: 645 KGFDSSQQEDA------------IRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF 502
           KG DS ++ DA             +  L+E F    EI  VS     ++G SKGIAY++F
Sbjct: 381 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEF 435

Query: 501 TDESSFSKAL-ELSGSDLGGCNLYVAEAKPKGQ 406
             E+   K   E  G+++ G ++ +     KGQ
Sbjct: 436 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQ 468



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           + ++FV   + ++    +++ + + F+K  ++  V V +    G ++   Y+DF      
Sbjct: 305 AFNLFVGNLNFNKSAPELKTGISDVFAK-NDLAVVDVRI----GMTRKFGYVDFESAEDL 359

Query: 483 SKALELSGSDLGGCNLYVAEAKPKGQ 406
            KALEL+G  + G  + +   KPKG+
Sbjct: 360 EKALELTGLKVFGNEIKL--EKPKGK 383



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = -1

Query: 633 SSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSD 454
           S+    A   +LQE F K    T + VP + +NG SKG A+++F   +SF  A E     
Sbjct: 490 SNLSYSATEETLQEVFEKA---TFIKVPQN-QNGKSKGYAFIEF---ASFEDAKEA---- 538

Query: 453 LGGCN 439
           L  CN
Sbjct: 539 LNSCN 543
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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      E+ ++ S +      G + R  +  D E G+SKG  ++DF  E   
Sbjct: 573 SKTLFVKGLSEDTTEETLKESFE------GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 625

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 626 KAAKEAMEDGEIDGNKVTLDWAKPKGE 652



 Score = 34.7 bits (78), Expect = 0.26
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYVAE 424
           L+E F    EI  VS     ++G SKGIAY++F  E+   K L E  G+++ G ++ +  
Sbjct: 412 LKEVFEDAVEIRLVS-----QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 466

Query: 423 AKPKGQ 406
              KGQ
Sbjct: 467 TGEKGQ 472



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           ++F+   + ++    ++ ++ E F+K  ++  V V      G ++   Y+DF       K
Sbjct: 311 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDV----RTGTNRKFGYVDFESAEDLEK 365

Query: 477 ALELSGSDLGGCNLYVAEAKPKGQ 406
           ALEL+G  + G  + +   KPKG+
Sbjct: 366 ALELTGLKVFGNEIKL--EKPKGR 387
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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      ED    +L+E F   G + R  +  D E G+SKG  ++DF  E   
Sbjct: 572 SKTLFVKGLS----EDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 624

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 625 KAAKEAMEDGEIDGNKVTLDWAKPKGE 651



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
 Frame = -1

Query: 645 KGFDSSQQEDA------------IRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF 502
           KG DS ++ DA             +  L+E F    EI  VS     ++G SKGIAY++F
Sbjct: 383 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEF 437

Query: 501 TDESSFSKAL-ELSGSDLGGCNLYVAEAKPKGQ 406
             E+   K   E  G+++ G ++ +     KGQ
Sbjct: 438 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQ 470



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           + ++FV   + ++    +++ + + F+K  ++  V V +    G ++   Y+DF      
Sbjct: 307 AFNLFVGNLNFNKSAPELKTGISDVFAK-NDLAVVDVRI----GMTRKFGYVDFESAEDL 361

Query: 483 SKALELSGSDLGGCNLYVAEAKPKGQ 406
            KALEL+G  + G  + +   KPKG+
Sbjct: 362 EKALELTGLKVFGNEIKL--EKPKGK 385



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = -1

Query: 633 SSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSD 454
           S+    A   +LQE F K    T + VP + +NG SKG A+++F   +SF  A E     
Sbjct: 492 SNLSYSATEETLQEVFEKA---TFIKVPQN-QNGKSKGYAFIEF---ASFEDAKEA---- 540

Query: 453 LGGCN 439
           L  CN
Sbjct: 541 LNSCN 545
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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      E+ ++ S +      G + R  +  D E G+SKG  ++DF  E   
Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE------GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 619

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 620 KAAKEAMEDGEIDGNKVTLDWAKPKGE 646



 Score = 34.7 bits (78), Expect = 0.26
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYVAE 424
           L+E F    EI  VS     ++G SKGIAY++F  E+   K L E  G+++ G ++ +  
Sbjct: 410 LKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 464

Query: 423 AKPKGQ 406
              KGQ
Sbjct: 465 TGEKGQ 470



 Score = 32.7 bits (73), Expect = 1.00
 Identities = 21/84 (25%), Positives = 43/84 (51%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           ++F+   + ++  + ++ ++ E F+K  ++  V V      G ++   Y+DF       K
Sbjct: 309 NLFIGNLNPNKSVNELKFAISELFAK-NDLAVVDV----RTGTNRKFGYVDFESAEDLEK 363

Query: 477 ALELSGSDLGGCNLYVAEAKPKGQ 406
           ALEL+G  + G  + +   KPKG+
Sbjct: 364 ALELTGLKVFGNEIKL--EKPKGR 385
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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S ++FVKG      E+ ++ S +      G + R  +  D E G+SKG  ++DF  E   
Sbjct: 570 SKTLFVKGLSEDTTEETLKESFE------GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 622

Query: 483 SKALE-LSGSDLGGCNLYVAEAKPKGQ 406
             A E +   ++ G  + +  AKPKG+
Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWAKPKGE 649



 Score = 34.3 bits (77), Expect = 0.34
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYVAE 424
           L+E F    EI  VS     ++G SKGIAY++F  E+   K L E  G+++ G ++ +  
Sbjct: 409 LKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 463

Query: 423 AKPKGQ 406
              KGQ
Sbjct: 464 TGEKGQ 469



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           ++F+   + ++    ++ ++ E F+K  ++  V V      G ++   Y+DF       K
Sbjct: 308 NLFIGNLNPNKSVAELKVAISEPFAK-NDLAVVDV----RTGTNRKFGYVDFESAEDLEK 362

Query: 477 ALELSGSDLGGCNLYVAEAKPKGQ 406
           ALEL+G  + G  + +   KPKG+
Sbjct: 363 ALELTGLKVFGNEIKL--EKPKGR 384
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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ED     L+E F K G    V V  D E+G SKG  ++ F       K
Sbjct: 192 NVYIKNFG----EDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G +L G  +YV  A+ K
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKK 269
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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ED     L+E F K G    V V  D E+G SKG  ++ F       K
Sbjct: 192 NVYIKNFG----EDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G +L G  +YV  A+ K
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKK 269
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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G +    E+ IR    E+F + GEI  + +P+D +    +G  ++ F +E    K 
Sbjct: 161 IFVGGLNPEATEEKIR----EYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
           LE     + G    +  A+PK
Sbjct: 217 LEKKFHTVSGSKCEIKVAQPK 237



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGG 445
           D  +  L+++F+K GE+   ++ MD   G S+G  ++ F D SS  K L+     L G
Sbjct: 85  DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDG 142
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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G      E+ IR    E+F   GE+  + +PMD++    +G  ++ F +E    K 
Sbjct: 182 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237

Query: 474 LELSGSDLG--GCNLYVAEAKPKGQ 406
           +E    ++G   C + VA +K + Q
Sbjct: 238 MEKKYHNVGLSKCEIKVAMSKEQYQ 262



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGG 445
           D  +  L+++FSK G++   ++ +D   G S+G  ++ F +  S  K ++     L G
Sbjct: 105 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 162
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>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G      E+ IR    E+F   GE+  + +PMD++    +G  ++ F +E    K 
Sbjct: 36  IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 91

Query: 474 LELSGSDLG--GCNLYVAEAKPKGQ 406
           +E    ++G   C + VA +K + Q
Sbjct: 92  MEKKYHNVGLSKCEIKVAMSKEQYQ 116
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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G      E+ IR    E+F   GE+  + +PMD++    +G  ++ F +E    K 
Sbjct: 184 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239

Query: 474 LELSGSDLG--GCNLYVAEAKPKGQ 406
           +E    ++G   C + VA +K + Q
Sbjct: 240 MEKKYHNVGLSKCEIKVAMSKEQYQ 264



 Score = 37.0 bits (84), Expect = 0.053
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGG 445
           D  +  L+++FSK GE+   ++ +D   G S+G  ++ F +  S  K ++     L G
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 164
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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G      E+ IR    E+F   GE+  + +PMD++    +G  ++ F +E    K 
Sbjct: 184 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239

Query: 474 LELSGSDLG--GCNLYVAEAKPKGQ 406
           +E    ++G   C + VA +K + Q
Sbjct: 240 MEKKYHNVGLSKCEIKVAMSKEQYQ 264



 Score = 37.0 bits (84), Expect = 0.053
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGG 445
           D  +  L+++FSK GE+   ++ +D   G S+G  ++ F +  S  K ++     L G
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 164
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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYVAE 424
           LQ  FS+ G++    +  D E+G S+G  ++ F DE +   A+ E++G +L G  + V E
Sbjct: 22  LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81

Query: 423 AKPKG 409
           A+ +G
Sbjct: 82  AQSRG 86
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>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G +    E      ++E+F + GEI  + +PMD +    +G  ++ F +E    K 
Sbjct: 154 IFVGGLNP---ESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 210

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
           LE     + G    +  A+PK
Sbjct: 211 LEKKFHTVSGSKCEIKVAQPK 231



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGG 445
           D  +  L+++F+K GE+   ++ MD   G S+G  ++ F D +S  K L+     L G
Sbjct: 78  DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG 135
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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ED     L++ F K G    V V  D E+G SKG  ++ F       K
Sbjct: 192 NVYIKNFG----EDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G +L G  +YV  A+ K
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKK 269
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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ED     L++ F K G    V V  D E+G SKG  ++ F       K
Sbjct: 192 NVYIKNFG----EDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G +L G  +YV  A+ K
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKK 269
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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +V++K F     ED     L++ F K G    V V  D E+G SKG  ++ F       K
Sbjct: 192 NVYIKNFG----EDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246

Query: 477 AL-ELSGSDLGGCNLYVAEAKPK 412
           A+ E++G +L G  +YV  A+ K
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKK 269
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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYV 430
           +SL++ F+  G++    V +D E G S+G  +++F DE + + A+ E+ G +L G ++ V
Sbjct: 49  ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108

Query: 429 AEAKPK 412
             A  +
Sbjct: 109 NPANDR 114
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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           +++FVK  D S  ++     L+E F+  G IT   V M  ENG SKG  ++ F+     +
Sbjct: 321 VNLFVKNLDDSVDDE----KLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEAT 375

Query: 480 KAL-ELSGSDLGGCNLYVAEAKPK 412
           KA+ E +   + G  LYVA A+ K
Sbjct: 376 KAITEKNQQIVAGKPLYVAIAQRK 399



 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           ++F+K        D    +L + FS  G+I    +  D ENG SKG  ++ F +E +  +
Sbjct: 126 NIFIKNL----HPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKE 180

Query: 477 ALE-LSGSDLGGCNLYVA 427
           A++ L+G  L G  +YVA
Sbjct: 181 AIDALNGMLLNGQEIYVA 198



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S S++V   + S  E    + L + FS  G ++ + V  D     S G AY++F D  + 
Sbjct: 36  SASLYVGDLEPSVSE----AHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAG 91

Query: 483 SKALE 469
            KA+E
Sbjct: 92  RKAIE 96
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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF-TDESSFS 481
           +++VK  + +  E+ +R    +HFS+CG IT   +  D E G SKG  ++ F T E +  
Sbjct: 305 NIYVKNVNVAVTEEELR----KHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAID 359

Query: 480 KALELSGSDLGGCNLYVAEAKPK 412
                 G    G  LYVA A+ K
Sbjct: 360 AVKTFHGQMFHGKPLYVAIAQKK 382
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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYVA 427
           S+L+EHF  CG I  V +  +   G  +G  Y+ F +  +   AL+L+ S+L G  L V 
Sbjct: 305 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM 364

Query: 426 EAKPK 412
            +  K
Sbjct: 365 RSVNK 369
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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYVA 427
           S+L+EHF  CG I  V +  +   G  +G  Y+ F +  +   AL+L+ S+L G  L V 
Sbjct: 299 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM 358

Query: 426 EAKPK 412
            +  K
Sbjct: 359 RSVNK 363
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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G + +  E A    L++HFS  G I+ V V  D E   S+G  ++ FT+    S A
Sbjct: 8   LFVGGLNFNTDEQA----LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

Query: 474 LE-LSGSDLGGCNLYVAEA 421
           +  ++G  L G  + V  A
Sbjct: 64  MRAMNGESLDGRQIRVDHA 82
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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 22/57 (38%), Positives = 33/57 (57%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYV 430
           L+E FS  G++  V +  D  +  SKGIAY++F D SS   A+ L+G  + G  + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225



 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           + ++V     +  ED +R      F   G I  + + MD E G SKG  ++ F+D     
Sbjct: 250 MRLYVGSLHFNITEDMLRGI----FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305

Query: 480 KALE-LSGSDLGG 445
           KALE L+G +L G
Sbjct: 306 KALEQLNGFELAG 318
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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G + +  E A    L++HFS  G I+ V V  D E   S+G  ++ FT+    S A
Sbjct: 8   LFVGGLNFNTDEQA----LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query: 474 LE-LSGSDLGGCNLYVAEA 421
           +  ++G  L G  + V  A
Sbjct: 64  MRAMNGESLDGRQIRVDHA 82
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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           +++++K  D +  ++ +R    + FS  G IT   V +  E+G SKG  ++ F+     +
Sbjct: 294 VNLYIKNLDDTIDDEKLR----KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEAT 347

Query: 480 KAL-ELSGSDLGGCNLYVAEAKPK 412
           KA+ E++G  +G   LYVA A+ K
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRK 371
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>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL 466
           + L+EHF + G+I RV +    + G  KG  ++DF D  +  KA+EL
Sbjct: 242 ADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL 288



 Score = 37.4 bits (85), Expect = 0.040
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 573 EITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALELSGSDLGGCNLYV 430
           +ITR+ +PM  E    +KG AY+DF  E +   AL+ S   L G N+ +
Sbjct: 148 QITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196
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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYV 430
           L + F + G +    +  D  +G SKG+AY++F  E S   A+ LSG  L G  + V
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIV 312
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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           VF+ G  S+  E  +R+     F++ G++T V +  D E   S+G  ++ F +ESS    
Sbjct: 98  VFLGGLPSNVTETDLRT----FFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHV 153

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
                 +L G  + + +A+P+
Sbjct: 154 TNERYINLNGKQVEIKKAEPR 174



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCN 439
           +  + +L  +F + G+I    V  ++E+G S+G  ++ F D ++ +  L+     L G  
Sbjct: 17  ETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRT 76

Query: 438 LYVAEAKPK 412
           +      P+
Sbjct: 77  IDPKPCNPR 85
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>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G  S  QED     LQ+ FSK G +T V +  +    AS+G  ++ F+     + A
Sbjct: 103 LFVSGIASRMQED----ELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158

Query: 474 LE-LSGSDLGGCNLYVAEAK 418
           ++ L+  +  G  L V +AK
Sbjct: 159 IDNLNSQEFYGRVLNVQKAK 178
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>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +F++    S  ED ++S     F   G++ +V +P+D +    KG AY+DF D     +A
Sbjct: 325 LFLRNLTYSCAEDDLKSL----FGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380

Query: 474 -LELSGSDLGGCNLYVAEAKPK 412
            LEL      G  L+V  AK +
Sbjct: 381 YLELDAKPFQGRLLHVLPAKAR 402
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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYV 430
           L+E FS  G++  V +  D  +  S+GIAY++F D SS   A+ L+G  + G  + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIV 225



 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           + ++V     +  ED +R      F   G I  + + MD E G SKG  ++ F+D     
Sbjct: 250 MRLYVGSLHFNITEDMLRGI----FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305

Query: 480 KALE-LSGSDLGG 445
           KALE L+G +L G
Sbjct: 306 KALEQLNGFELAG 318
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>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE------LSGSDLGG 445
           S L+EHFS  G+I  + V  D     SKGIA++ F   S   +A+E      L  +D   
Sbjct: 39  SVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKP 98

Query: 444 CNLYVAEAKPKG 409
             +++A+++  G
Sbjct: 99  IKVFIAQSRSSG 110



 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV    S  +ED     L+E F   G+I   SV  +   G SKG+ Y+ +   S  ++A
Sbjct: 123 IFVMIPKSYTEED-----LREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQA 177

Query: 474 LE 469
           +E
Sbjct: 178 IE 179
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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +     L++HF K GEI  ++V  D + G S+G A++ FT+  +  K
Sbjct: 66  ETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112
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>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGC 442
           DA  S L+  FSK G+I  + V  D  +  SKG AY+ + +  +  +A  EL G    G 
Sbjct: 311 DASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGR 370

Query: 441 NLYVAEAKPK 412
            +++  A  K
Sbjct: 371 LMHILPATAK 380
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>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE 469
           D     L++HF  CG+I ++ +    ++G  KG A++DF +E   +  L+
Sbjct: 249 DVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELK 298



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -1

Query: 573 EITRVSVPMDHENGAS----KGIAYMDFTDESSFSKALELSGSDLGGCNLYVAEAK 418
           +ITR+S+P      ++    KG  YM F +       LELS S L G N+ + +++
Sbjct: 163 DITRLSMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSE 218
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>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -1

Query: 639 FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF-TDESSFSKALELS 463
           F +S  E+A    +QE F   GEI  + + +D   G SKG A +++ T + + +    L+
Sbjct: 76  FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135

Query: 462 GSDLGGCNLYVAEAKPKG 409
           G+++ G  + V     KG
Sbjct: 136 GAEIMGQTIQVDWCFVKG 153
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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -1

Query: 645 KGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL 466
           K F    +ED     L+E+F + G+I  + +  D ++G  +G A++ F D     K +  
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160

Query: 465 SGSDLGGCNLYVAEAKPK 412
               + G N  V +A  K
Sbjct: 161 KYHTINGHNAEVRKALSK 178
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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGGCNLYV-- 430
           L++ FS+ G++    V  D E+G S+G  ++  + E+  S+A+  L G  L G  + V  
Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNA 266

Query: 429 AEAKPK 412
           AE +P+
Sbjct: 267 AEERPR 272
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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYV 430
           L++ FS  G++  V +  D  +  SKGIAY++F +  S   A+ L+G  L G  + V
Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV 238



 Score = 33.5 bits (75), Expect = 0.58
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 660 LSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           + ++V     +  ED +R      F   G+I  + +  D + G SKG  ++ F+D     
Sbjct: 263 MRLYVGSLHFNITEDMLRGI----FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 318

Query: 480 KALE-LSGSDLGG 445
           +ALE L+G +L G
Sbjct: 319 RALEQLNGFELAG 331
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>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           VF+       +  AI+  ++E   K GE+T V +  D E G S+G   ++F DE    KA
Sbjct: 102 VFISNIPYDMKWQAIKDLMRE---KVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKA 157

Query: 474 LE-LSGSDLGGCNLYVAEAKPKGQ 406
           LE ++  DL G  L + E  P G+
Sbjct: 158 LETMNKYDLSGRPLNIKE-DPDGE 180



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL 466
           D     L+E FS+CG +    + M  ENG SKG   + F    S  KA  +
Sbjct: 533 DLTWQKLKEKFSQCGHVMFAEIKM--ENGKSKGCGTVRFDSPESAEKACRI 581
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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSFSKALELSGSDLGGC 442
           DA     ++ FS  GE+  V V +D   G SKG AY+ F D E + +  +EL      G 
Sbjct: 311 DATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGR 370

Query: 441 NLYVAEAKPK 412
            L++  A  K
Sbjct: 371 LLHILPADAK 380
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>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +F++    +  ED +R    EHF+K G +  V VP+D   G SKG A + +   +S   A
Sbjct: 310 LFLRNLSYTVTEDDVR----EHFAKFGILVEVHVPLD-SKGHSKGFAMIRYEKPASALAA 364

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
            +  G+   G  +++  A  K
Sbjct: 365 FQTDGTVFQGRIVHILPAAAK 385
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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G     +ED +R    E+F + G+I  + +  D  +G  +G A++ F D  S  K 
Sbjct: 107 IFVGGIKEDTEEDHLR----EYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
           +      +   N  V +A  K
Sbjct: 163 VIQKYHTVNNHNSQVRKALSK 183
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>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           SVFV+        DA   SL  HFSK G +      +D   G +KG A++ F D+ ++++
Sbjct: 291 SVFVRNVPY----DATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNE 346

Query: 477 ALE 469
            ++
Sbjct: 347 CIK 349
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>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           VF+       +  AI+  ++E   K GE+T V +  D E G S+G   ++F DE    KA
Sbjct: 93  VFISNIPYDMKWQAIKDLMRE---KVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKA 148

Query: 474 LE-LSGSDLGGCNLYVAEAKPKGQ 406
           LE ++  DL G  L + E  P G+
Sbjct: 149 LETMNKYDLSGRPLNIKE-DPDGE 171



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL 466
           D     L+E FS+CG +    + M  ENG SKG   + F    S  KA  +
Sbjct: 524 DLTWQKLKEKFSQCGHVMFAEIKM--ENGKSKGCGTVRFESAESAEKACRI 572
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>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 621 EDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           ED   + LQE F   G I+R+ +  D   G SKG A++ F      ++A+  +SG     
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 307

Query: 444 CNLYVAEAKP 415
             L V  AKP
Sbjct: 308 LILNVEWAKP 317
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>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 621 EDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           ED   + LQE F   G I+R+ +  D   G SKG A++ F      ++A+  +SG     
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 307

Query: 444 CNLYVAEAKP 415
             L V  AKP
Sbjct: 308 LILNVEWAKP 317
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>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 621 EDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +D     L   F  CG I    +  D++ G S G A++DF  E     A++ L+G  +  
Sbjct: 94  QDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRN 153

Query: 444 CNLYVAEAKPKGQ 406
             L V+ A+P G+
Sbjct: 154 KRLKVSYARPGGE 166
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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G D S  ++ +RS    +FS+ GE+    +  D     S+G  ++ F D +     
Sbjct: 12  LFVGGLDWSTTQETLRS----YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 474 LELSGSDLGGCNLYVAEAKPKG 409
           L      L G N+      P+G
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRG 89
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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G D S  ++ +RS    +FS+ GE+    +  D     S+G  ++ F D +     
Sbjct: 12  LFVGGLDWSTTQETLRS----YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 474 LELSGSDLGGCNLYVAEAKPKG 409
           L      L G N+      P+G
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRG 89
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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G D S  ++ +RS    +FS+ GE+    +  D     S+G  ++ F D +     
Sbjct: 12  LFVGGLDWSTTQETLRS----YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 474 LELSGSDLGGCNLYVAEAKPKG 409
           L      L G N+      P+G
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRG 89
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>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE------LSGSDLGGCN 439
           L+E FS  G+I  + V  D     SKG+A++ F   S   +A+E      L  SD     
Sbjct: 41  LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIK 100

Query: 438 LYVAEAKPKG 409
           +++A+++  G
Sbjct: 101 VFIAQSRSSG 110
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>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = -1

Query: 606 SSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE------LSGSDLGG 445
           S L+E FS  G+I  + V  D     SKGIA++ F   S   +A+E      L  +D   
Sbjct: 39  SVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKP 98

Query: 444 CNLYVAEAKPKG 409
             +++A+++  G
Sbjct: 99  IKVFIAQSRSSG 110
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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S  +F+ G +    ED    +L+E+F K G +T + +  D   G S+G  ++ F   SS 
Sbjct: 158 SCKMFIGGLNWDTTED----NLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213

Query: 483 SKALE 469
            + ++
Sbjct: 214 DEVVK 218
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>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDL-GGC 442
           +A    L  +F  CG I  V +  D +    KG AY+ F D     KAL L+   +  G 
Sbjct: 280 EAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGR 339

Query: 441 NLYVAEAK 418
            L +  AK
Sbjct: 340 TLRIMRAK 347
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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G      E+ +R    E+F   G+I  V++  D + G  +G A+++F D     K 
Sbjct: 117 LFVGGLRDDHDEECLR----EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKI 172

Query: 474 L 472
           +
Sbjct: 173 I 173



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/81 (22%), Positives = 33/81 (40%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +F+ G D    +D +++    HF K G I  V V  D +   S+G  ++ ++       A
Sbjct: 26  LFIGGLDYRTTDDGLKA----HFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
                  + G  +    A P+
Sbjct: 82  QNARPHKIDGRTVEPKRAVPR 102
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>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 621 EDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +D     L   F  CG I    +  D++ G S G A++DF  E     A++ ++G  +  
Sbjct: 111 QDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRN 170

Query: 444 CNLYVAEAKPKGQ 406
             L V+ A+P G+
Sbjct: 171 KRLKVSYARPGGE 183
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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 654 VFVKG--FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSF 484
           +FV G  FD+++Q      SL++ FSK G+I+ V V  D E   S+G  ++ F + + + 
Sbjct: 8   LFVGGLSFDTNEQ------SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 483 SKALELSGSDLGGCNLYVAEA 421
              + ++G  + G  + V +A
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQA 82
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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 654 VFVKG--FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSF 484
           +FV G  FD+++Q      SL++ FSK G+I+ V V  D E   S+G  ++ F + + + 
Sbjct: 8   LFVGGLSFDTNEQ------SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 483 SKALELSGSDLGGCNLYVAEA 421
              + ++G  + G  + V +A
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQA 82
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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 645 KGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL 466
           K F    +ED     L+E+F + G+I    +  D ++G  +G  ++ F D     K +  
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160

Query: 465 SGSDLGGCNLYVAEAKPK 412
               + G N  V +A  K
Sbjct: 161 KYHTINGHNAEVRKALSK 178
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>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-----ELSGSDLGGCN 439
           SL+++FSK GEI    V  D     S+G  ++ F D +S  K L     EL    +    
Sbjct: 36  SLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKV 95

Query: 438 LYVAEAKPK 412
            +   A+PK
Sbjct: 96  AFPRRAQPK 104
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>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 570 ITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLGGCNLYVAEAKPK 412
           +T + + +D     S+G  Y++F    + S AL LSG DL G  + +  A+P+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-----ELSGSDLGGCN 439
           SL+++FSK GEI    V  D     S+G  ++ F D +S  K L     EL    +    
Sbjct: 36  SLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKV 95

Query: 438 LYVAEAKPK 412
            +   A+PK
Sbjct: 96  AFPRRAQPK 104
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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 618 DAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE 469
           +A R ++ E F+K GE+  V +P   E    KG  Y+ F++     KAL+
Sbjct: 277 NADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL-ELSGSDLGG--CNLYV 430
           L++ F   G +    V  +     S+G  Y+DF ++S   KA+ E+ G ++ G   N  +
Sbjct: 184 LKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDM 243

Query: 429 AEAKPKG 409
           + +KP G
Sbjct: 244 STSKPAG 250
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>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVAE 424
           L   F   G+IT + +P+D+E    +G A+++F      + A++ ++ S+L G  + V  
Sbjct: 22  LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81

Query: 423 AKP 415
           AKP
Sbjct: 82  AKP 84
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>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVAE 424
           L   F   G+IT + +P+D+E    +G A+++F      + A++ ++ S+L G  + V  
Sbjct: 22  LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81

Query: 423 AKP 415
           AKP
Sbjct: 82  AKP 84
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>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDE 493
           +FV G      E+ IR    E+F   GE+  + +PMD++    +G  ++ F  E
Sbjct: 174 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFNQE 223
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>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -1

Query: 621 EDAIRSSLQEHFS-KCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLG 448
           E+A  +SL+E        I RVSV  + E G S+G+A++ F+ E    +AL  L G    
Sbjct: 200 ENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYM 259

Query: 447 GCNLYVAEAKPK 412
              L V  +KPK
Sbjct: 260 NLILRVEWSKPK 271
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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 654 VFVKG--FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSF 484
           +FV G  FD+++Q      +L++ FSK G+I+ V V  D E   S+G  ++ F + + + 
Sbjct: 8   LFVGGLSFDTNEQ------ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 483 SKALELSGSDLGGCNLYVAEA 421
              + ++G  + G  + V +A
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQA 82
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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 654 VFVKG--FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSF 484
           +FV G  FD+++Q      +L++ FSK G+I+ V V  D E   S+G  ++ F + + + 
Sbjct: 8   LFVGGLSFDTNEQ------ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 483 SKALELSGSDLGGCNLYVAEA 421
              + ++G  + G  + V +A
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQA 82
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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 654 VFVKG--FDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTD-ESSF 484
           +FV G  FD+++Q      +L++ FSK G+I+ V V  D E   S+G  ++ F + + + 
Sbjct: 8   LFVGGLSFDTNEQ------ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 483 SKALELSGSDLGGCNLYVAEA 421
              + ++G  + G  + V +A
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQA 82
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>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 612 IRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDF 502
           I   LQE+F++ G +TR+ +    + G SKG AY+++
Sbjct: 53  IEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 633 SSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA-LELSGS 457
           +S++ED      ++ FS  GE+  V V +D   G SKG AY+ F D  +   A +EL   
Sbjct: 355 TSKEED-----FRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQ 409

Query: 456 DLGGCNLYVAEAKPK 412
              G  L++   + K
Sbjct: 410 IFQGRLLHILPGEEK 424
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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV G  S+  +D +R    E +S+ GEIT + V  D     S+G  ++ F+ ++    A
Sbjct: 25  IFVGGLTSNTTDDLMR----EFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80

Query: 474 LELSGSDLGGCNLYVAEAKPK 412
           ++     + G  +    A P+
Sbjct: 81  MKQRPHIIDGKTVDPKRAVPR 101



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 633 SSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL 472
           S  +ED     L E+F+K G +T+  + +D      +G  ++ F D  S  + +
Sbjct: 119 SGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
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>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDF 502
           L+E+FS+ G +TR+ +    + G SKG AY++F
Sbjct: 57  LREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
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>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL 472
           L+E+FS  GE+  V V  D + G SKG  ++ FT+  +  K +
Sbjct: 120 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
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>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 588 FSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALEL-SGSDLGGCNLYVAEAKPK 412
           F   G + +V +P+D +  ASKG+A++ F+D +    A     GS   G  L++  A  K
Sbjct: 334 FESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNK 393
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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +F+ G +    ED     L++ F+K G I+ V V  D E   S+G  ++ F +      A
Sbjct: 7   LFIGGLNFETNEDC----LEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62

Query: 474 -LELSGSDLGGCNLYVAEA 421
            + ++G  + G  + V +A
Sbjct: 63  MMAMNGKSVDGRQIRVDQA 81
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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +VFV G D    E  IRS    +F + G +  V +  D   G SKG  ++ F D     K
Sbjct: 37  TVFVGGIDIRMNEAEIRS----YFEQYGTVKEVKIITD-RTGVSKGYGFVSFLDNVDVQK 91

Query: 477 ALE 469
            +E
Sbjct: 92  IVE 94
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>CPB1_CAERE (Q6E3C9) Cytoplasmic polyadenylation element-binding protein 1|
          Length = 594

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           +VF+ G     +   + SSLQ+++   G+++ V + +D E    KG A + F +  SF +
Sbjct: 382 TVFIGGVPRPTRASDLASSLQDYY---GKVSYVGIDIDPELKYPKGAARVTFANSQSFVR 438

Query: 477 AL 472
           A+
Sbjct: 439 AI 440
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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV+   ++  E+ +  S    FS+ G++ RV    D+        A++ F +     KA
Sbjct: 250 LFVRNLANTVTEEILEKS----FSQFGKLERVKKLKDY--------AFIHFDERDGAVKA 297

Query: 474 LE-LSGSDLGGCNLYVAEAKPKGQ 406
           +E ++G DL G N+ +  AKP  Q
Sbjct: 298 MEEMNGKDLEGENIEIVFAKPPDQ 321
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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV+   ++  E+ +  S    FS+ G++ RV    D+        A++ F +     KA
Sbjct: 340 LFVRNLANTVTEEILEKS----FSQFGKLERVKKLKDY--------AFIHFDERDGAVKA 387

Query: 474 LE-LSGSDLGGCNLYVAEAKPKGQ 406
           +E ++G DL G N+ +  AKP  Q
Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQ 411
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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVAE 424
           L   F   G+I  + +P D+E+   +G A++++      + A++ ++ S+L G  + V  
Sbjct: 22  LNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNL 81

Query: 423 AKP 415
           AKP
Sbjct: 82  AKP 84
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>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S  +FV+      +E    S L+  FS  G+I  + V  D     SKG AY+ + D  + 
Sbjct: 294 SARLFVRNLSYETKE----SELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAA 349

Query: 483 SKAL-ELSGSDLGGCNLYVAEAKPK 412
            +A   L G    G  L++  A  K
Sbjct: 350 VEAYRNLDGKIFQGRLLHILPASQK 374
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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA 475
           +FV+   ++  E+     L++ FS+ G++ RV    D+        A++ F +     KA
Sbjct: 340 LFVRNLANTVTEEI----LEKAFSQFGKLERVKKLKDY--------AFIHFDERDGAVKA 387

Query: 474 LE-LSGSDLGGCNLYVAEAKPKGQ 406
           +E ++G DL G N+ +  AKP  Q
Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQ 411
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>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -1

Query: 663 SLSVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSF 484
           S  +FV    ++  +D +  S+ E+F K G++ RV V  D+   A++  A++ + ++   
Sbjct: 92  SSCIFVASLAAALSDDELCLSVTENFKKYGDLARVKVLRDN---ANRPYAFVQYNNDHDA 148

Query: 483 SKAL-ELSGSDLGGCNLYVAEAK 418
             AL    G+ L G  L    AK
Sbjct: 149 KHALIRAQGTLLNGRRLRCEPAK 171
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>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL 472
           L+++FS  GE+  V V  D + G SKG  ++ FT+  +  K +
Sbjct: 120 LKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           L+E FSK G I  VS+  D ++  S+G A++ F +     +A E  +G +L G  + V
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 191
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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           L+E FSK G I  VS+  D ++  S+G A++ F +     +A E  +G +L G  + V
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 191
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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           L+E FSK G I  VS+  D ++  S+G A++ F +     +A E  +G +L G  + V
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 191
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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           S+FV     +  E  + S     ++ C       +  D +   S+G  ++ FTDE+    
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKS---AKIMTDPQTNVSRGYGFVRFTDENDQKS 243

Query: 477 AL-ELSGSDLGGCNLYVAEAKPKGQ 406
           AL E+ G   G   + V  A PK +
Sbjct: 244 ALAEMQGQICGDRPIRVGLATPKSK 268
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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           L+E FS+ G ++ V+V  D   G S+G A++ F       +A+E  +G +L G  + V
Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 190
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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 615 AIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKA-LELSGSDLGGCN 439
           A     ++ FS  GE+  V + +D   G SKG AY+ F +  + + A +EL      G  
Sbjct: 341 ATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRL 400

Query: 438 LYVAEAKPK 412
           L++  A  K
Sbjct: 401 LHILPADAK 409
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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYV 430
           L+E FS+ G ++ V+V  D   G S+G A++ F       +A+E  +G +L G  + V
Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 192
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>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 657 SVFVKGF-DSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           S+FV+   D ++ ED     L+  F + G I  V VP+D      +G AY+ F D     
Sbjct: 11  SLFVRNVADDTRSED-----LRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65

Query: 480 KAL 472
            AL
Sbjct: 66  DAL 68
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>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 657 SVFVKGF-DSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           S+FV+   D ++ ED     L+  F + G I  V VP+D      +G AY+ F D     
Sbjct: 11  SLFVRNVADDTRSED-----LRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65

Query: 480 KAL 472
            AL
Sbjct: 66  DAL 68
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>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  F K G +  V +P D     S+G A++ F D+     A++ + G+ L G  L V 
Sbjct: 28  TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 87

Query: 426 EAK 418
            A+
Sbjct: 88  MAR 90
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>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  F K G +  V +P D     S+G A++ F D+     A++ + G+ L G  L V 
Sbjct: 28  TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 87

Query: 426 EAK 418
            A+
Sbjct: 88  MAR 90
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>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  F K G +  V +P D     S+G A++ F D+     A++ + G+ L G  L V 
Sbjct: 28  TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 87

Query: 426 EAK 418
            A+
Sbjct: 88  MAR 90
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>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  F K G +  V +P D     S+G A++ F D+     A++ + G+ L G  L V 
Sbjct: 28  TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 87

Query: 426 EAK 418
            A+
Sbjct: 88  MAR 90
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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 600 LQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDLG 448
           LQ++F K GEI ++ +  D     SKG A++ F D  S   A +  G   G
Sbjct: 123 LQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRG 173
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>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 603 SLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE-LSGSDLGGCNLYVA 427
           +L+  F K G +  V +P D     S+G A++ F D+     A++ + G+ L G  L V 
Sbjct: 29  TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88

Query: 426 EAK 418
            A+
Sbjct: 89  MAR 91
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>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 657 SVFVKGF-DSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFS 481
           S+F++   D+++ ED     L+  F + G I  V +P+D      +G AY+ F D     
Sbjct: 11  SLFIRNVADATRPED-----LRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAE 65

Query: 480 KAL 472
            AL
Sbjct: 66  DAL 68
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>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           + F K F          +SL+++F   G+I    V  D + G S+G  ++   D ++  +
Sbjct: 29  TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADR 88

Query: 477 ALELSGSDLGG----CNLYVAEAKPK 412
           A +     + G     NL    AKP+
Sbjct: 89  ACKDPNPIIDGRKANVNLAYLGAKPR 114
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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFT-DESSFSK 478
           +F++    S  ED      ++ FS  GE+  V V +D   G SKG AY+ F   E +   
Sbjct: 327 LFLRNILYSSTED----DFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQA 382

Query: 477 ALELSGSDLGGCNLYVAEA 421
            +EL      G  L++  A
Sbjct: 383 YIELDKQIFQGRLLHILAA 401
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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 657 SVFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSK 478
           + F K F          +SL+++F   G+I    V  D + G S+G  ++   D ++  +
Sbjct: 8   TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67

Query: 477 ALELSGSDLGG----CNLYVAEAKPK 412
           A +     + G     NL    AKP+
Sbjct: 68  ACKDPNPIIDGRKANVNLAYLGAKPR 93
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>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 588 FSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE 469
           FS+ GEI  +++  D + G SKG  ++ + D+ S   A++
Sbjct: 56  FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVD 95
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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 588 FSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALE 469
           FS+ GEI  +++  D + G SKG  ++ + D+ S   A++
Sbjct: 56  FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
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>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDL 451
           +  L+E+F + GE+    V  D     S+G  ++ F D++   K L  S  +L
Sbjct: 33  QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85
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>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDL 451
           +  L+E+F + GE+    V  D     S+G  ++ F D++   K L  S  +L
Sbjct: 33  QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85
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>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSGSDL 451
           +  L+E+F + GE+    V  D     S+G  ++ F D++   K L  S  +L
Sbjct: 33  QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85
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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMD-HENGASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P+D +    SKG AY++F       KAL+ + G  + G
Sbjct: 151 KDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDG 207
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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P++  +   SKG AY++F +     KAL+ + G  + G
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P++  +   SKG AY++F +     KAL+ + G  + G
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P++  +   SKG AY++F +     KAL+ + G  + G
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P++  +   SKG AY++F +     KAL+ + G  + G
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENG-ASKGIAYMDFTDESSFSKALE-LSGSDLGG 445
           +  + E FS  G+I  + +P++  +   SKG AY++F +     KAL+ + G  + G
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
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>NOP12_NEUCR (Q7S2L7) Nucleolar protein 12|
          Length = 594

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 576 GEITRVSVPMDHENGASKGIAYMDFTDESSFSKALELSG 460
           G++  V V  D      KG AY+ F DE++   A+ L+G
Sbjct: 370 GKVESVRVVRDPVTRVGKGFAYVQFCDENAVESAILLNG 408
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>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit|
           (eIF3 p90) (Cell cycle regulation and translation
           initiation protein)
          Length = 763

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 630 SQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMD 505
           S +   ++ +L   FSK G++  +  P+D   G +KG  +++
Sbjct: 89  SAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVE 130
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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL 472
           +  +++ FS+ G I    V +D   G S+G+A++ F   S   +A+
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 609 RSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFTDESSFSKAL 472
           +  +++ FS+ G I    V +D   G S+G+A++ F   S   +A+
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 654 VFVKGFDSSQQEDAIRSSLQEHFSKCGEITRVSVPMDHENGASKGIAYMDFT 499
           +F+ G D    ++    SL++HF + GEI  V V  D +   S+G  ++ ++
Sbjct: 19  LFIGGLDYRTTDE----SLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,521,967
Number of Sequences: 219361
Number of extensions: 1088920
Number of successful extensions: 3146
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 3006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3134
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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