ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154032.1| Drosophila melanogaster clone BACR16N23, complete... 46 0.10
2gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete... 46 0.10
3gb|AE003847.5| Drosophila melanogaster chromosome 4, section 4 o... 46 0.10
4gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
7dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
9gb|AC010297.5| Homo sapiens chromosome 5 clone CTB-162J7, comple... 42 1.6
10emb|CR376843.11| Zebrafish DNA sequence from clone CH211-284N15 ... 42 1.6
11emb|AL365367.10| Human DNA sequence from clone RP4-736C13 on chr... 40 6.3
12emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in ... 40 6.3
13gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete se... 40 6.3
14gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome... 40 6.3
15emb|BX005235.8| Zebrafish DNA sequence from clone DKEY-68L7 in l... 40 6.3
16dbj|AK112759.1| Ciona intestinalis cDNA, clone:cieg054k11, full ... 40 6.3
17dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.3
18emb|AL929508.6| Zebrafish DNA sequence from clone CH211-158G13, ... 40 6.3

>gb|AC154032.1| Drosophila melanogaster clone BACR16N23, complete sequence
          Length = 149839

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 58    ttttttgtatttatacagaactg 80
             |||||||||||||||||||||||
Sbjct: 64931 ttttttgtatttatacagaactg 64909



to top

>gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete sequence
          Length = 165458

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 58    ttttttgtatttatacagaactg 80
             |||||||||||||||||||||||
Sbjct: 63801 ttttttgtatttatacagaactg 63823



to top

>gb|AE003847.5| Drosophila melanogaster chromosome 4, section 4 of 5 of the complete
             sequence
          Length = 107108

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 58    ttttttgtatttatacagaactg 80
             |||||||||||||||||||||||
Sbjct: 81785 ttttttgtatttatacagaactg 81763



to top

>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0036K13 map near R3342S, complete sequence
          Length = 135684

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 374   catctatttagaaacagagatagtac 399
             |||||||||| |||||||||||||||
Sbjct: 37245 catctatttaaaaacagagatagtac 37270



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 374      catctatttagaaacagagatagtac 399
                |||||||||| |||||||||||||||
Sbjct: 27501118 catctatttaaaaacagagatagtac 27501143



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 374     catctatttagaaacagagatagtac 399
               |||||||||| |||||||||||||||
Sbjct: 3172300 catctatttaaaaacagagatagtac 3172275



to top

>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455F03
          Length = 158201

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 374   catctatttagaaacagagatagtac 399
             |||||||||| |||||||||||||||
Sbjct: 87290 catctatttaaaaacagagatagtac 87265



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 374      catctatttagaaacagagatagtac 399
                |||||||||| |||||||||||||||
Sbjct: 27525106 catctatttaaaaacagagatagtac 27525131



to top

>gb|AC010297.5| Homo sapiens chromosome 5 clone CTB-162J7, complete sequence
          Length = 157580

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     ttttttgtatttatacagaac 78
              |||||||||||||||||||||
Sbjct: 131284 ttttttgtatttatacagaac 131304



to top

>emb|CR376843.11| Zebrafish DNA sequence from clone CH211-284N15 in linkage group 19,
             complete sequence
          Length = 75162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    tctgacattttttgtatttat 71
             |||||||||||||||||||||
Sbjct: 17111 tctgacattttttgtatttat 17131



to top

>emb|AL365367.10| Human DNA sequence from clone RP4-736C13 on chromosome 1p32.2-32.3
             Contains part of a variant of the DAB1 gene for disabled
             homolog 1 (Drosophila), complete sequence
          Length = 90675

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   atgcaatttttcttcacaga 360
             ||||||||||||||||||||
Sbjct: 48630 atgcaatttttcttcacaga 48649



to top

>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14,
             complete sequence
          Length = 190254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    attttttgtatttatacagaactg 80
             |||||||||||||||| |||||||
Sbjct: 16757 attttttgtatttatatagaactg 16734



to top

>gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete sequence
          Length = 178580

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cattttttgtatttatacag 75
              ||||||||||||||||||||
Sbjct: 109065 cattttttgtatttatacag 109046



to top

>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence
          Length = 203909

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    aagtgaacagcactcctcca 194
              ||||||||||||||||||||
Sbjct: 101401 aagtgaacagcactcctcca 101420



to top

>emb|BX005235.8| Zebrafish DNA sequence from clone DKEY-68L7 in linkage group 23,
             complete sequence
          Length = 141636

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 100   taaataaattncctaatgaagtt 122
             |||||||||| ||||||||||||
Sbjct: 99513 taaataaattacctaatgaagtt 99491



to top

>dbj|AK112759.1| Ciona intestinalis cDNA, clone:cieg054k11, full insert sequence
          Length = 4402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tttgtttgaaccttcaagtt 251
            ||||||||||||||||||||
Sbjct: 2773 tttgtttgaaccttcaagtt 2754



to top

>dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48O21, TM0211,
             complete sequence
          Length = 137303

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tttttcttcacagactacaa 366
             ||||||||||||||||||||
Sbjct: 42463 tttttcttcacagactacaa 42444



to top

>emb|AL929508.6| Zebrafish DNA sequence from clone CH211-158G13, complete sequence
          Length = 180029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 100    taaataaattncctaatgaagtt 122
              |||||||||| ||||||||||||
Sbjct: 119398 taaataaattacctaatgaagtt 119420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,674,170
Number of Sequences: 3902068
Number of extensions: 4674170
Number of successful extensions: 78603
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78505
Number of HSP's gapped (non-prelim): 98
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top