ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29o08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 9e-68
2gb|AY107573.1| Zea mays PCO077294 mRNA sequence 218 2e-53
3dbj|AK099694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
6emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102... 135 2e-28
7gb|BT023990.1| Zea mays clone EL01N0412C01 mRNA sequence 86 2e-13
8gb|BT013686.1| Lycopersicon esculentum clone 132509R, mRNA sequence 78 5e-11
9gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 74 7e-10
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 74 7e-10
12emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chr... 46 0.16
13gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complet... 42 2.5
14gb|AC138151.3| Mus musculus BAC clone RP24-294E11 from 7, comple... 42 2.5
15ref|XM_424343.1| PREDICTED: Gallus gallus similar to aquaporin 1... 40 9.8
16ref|XM_426933.1| PREDICTED: Gallus gallus similar to aquaporin 1... 40 9.8
17gb|AC147251.3| Mus musculus BAC clone RP24-114L16 from chromosom... 40 9.8
18gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 40 9.8
19gb|AC125146.3| Mus musculus BAC clone RP24-348B1 from chromosome... 40 9.8
20gb|AC127260.3| Mus musculus BAC clone RP24-315I3 from chromosome... 40 9.8
21gb|AC125037.4| Mus musculus BAC clone RP23-332H20 from chromosom... 40 9.8
22gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome... 40 9.8
23gb|AY266303.2| Bacteriophage Aeh1, complete genome 40 9.8
24emb|AL160056.16| Human DNA sequence from clone RP11-239F3 on chr... 40 9.8
25emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chro... 40 9.8
26emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, ... 40 9.8
27emb|AL049483.1|ATF20B18 Arabidopsis thaliana DNA chromosome 4, B... 40 9.8
28emb|BX629347.20| Zebrafish DNA sequence from clone DKEY-103K21 i... 40 9.8
29emb|AL844587.19| Zebrafish DNA sequence from clone DKEY-7E14 in ... 40 9.8
30gb|BC114205.1| Bos taurus cDNA clone MGC:139941 IMAGE:8285050, c... 40 9.8
31gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, co... 40 9.8
32gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, comp... 40 9.8
33gb|S63858.1| Rhizobium sp. NGR234 orf 5' of rpoN gene, complete ... 40 9.8
34emb|BX929593.2| Gallus gallus finished cDNA, clone ChEST744p3 40 9.8
35emb|BX930629.1| Gallus gallus finished cDNA, clone ChEST972o15 40 9.8
36gb|AF260232.1|AF260232 Trichinella spiralis unknown mRNA 40 9.8
37dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15,... 40 9.8
38emb|CR925824.7| Zebrafish DNA sequence from clone DKEYP-66E4 in ... 40 9.8
39gb|AF542649.1| Campylobacter jejuni strain RM1850 RloA (rloA) an... 40 9.8
40gb|AF542648.1| Campylobacter jejuni strain RM1551 RloA (rloA) an... 40 9.8
41gb|AF542645.1| Campylobacter jejuni strain RM1248 RloE (rloE) an... 40 9.8
42gb|AF542641.1| Campylobacter jejuni strain RM1048 RloA (rloA) an... 40 9.8
43gb|DQ331585.1| Synthetic construct Saccharomyces cerevisiae clon... 40 9.8
44gb|U76599.1|HUMCOL36 Human 180 kDa bullous pemphigoid antigen 2/... 40 9.8
45emb|AL672089.17| Mouse DNA sequence from clone RP23-295D9 on chr... 40 9.8
46emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chrom... 40 9.8
47emb|AL929065.4| Mouse DNA sequence from clone RP23-270H4 on chro... 40 9.8
48gb|M58481.1|RHMRPON Rhizobium sp. sigma factor 54 (rpoN) gene, c... 40 9.8
49dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI co... 40 9.8
50dbj|D26442.1|YSCPES4 Yeast gene for PES4 PAB-like protein, compl... 40 9.8 
>dbj|AK059540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E08, full
           insert sequence
          Length = 934

 Score =  266 bits (134), Expect = 9e-68
 Identities = 239/274 (87%)
 Strand = Plus / Minus

                                                                       
Query: 445 tttcttcactccaaagatttgagcagacggaataagccagccgcttcccttattcgtgag 504
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 429 tttcttcactccaaagatttgagcagccggaataagccagctgcttcccttatccgtgag 370

                                                                       
Query: 505 aactctatgcagaacgcctgtacctcaatgaaaagatcttgaacgttaataatttgattt 564
           ||||| |||||||| || |||||||| ||||| || ||||||||||| || || |  |||
Sbjct: 369 aactcaatgcagaaagcttgtacctcgatgaagaggtcttgaacgtttatgatcttgttt 310

                                                                       
Query: 565 cggatgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtactta 624
           ||||||||   ||| |||||||||||||| | ||||||||  |||||||||||||| |||
Sbjct: 309 cggatgagagactgaaggaaaacacaaactagtctcaccaacctgttctgcatgtattta 250

                                                                       
Query: 625 tccttaatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctgtc 684
           ||||||| ||| ||||||||||| || ||||| |||||||| || ||||||||  |||||
Sbjct: 249 tccttaacgttctgacatgattggatgcaattcgagatgtactcatggacaaactctgtc 190

                                             
Query: 685 gggagttcaaccgcagtagtaagtctgtttacaa 718
           |||||||| || ||||||||||| ||||||||||
Sbjct: 189 gggagttctacagcagtagtaagcctgtttacaa 156
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>gb|AY107573.1| Zea mays PCO077294 mRNA sequence
          Length = 1110

 Score =  218 bits (110), Expect = 2e-53
 Identities = 230/270 (85%)
 Strand = Plus / Minus

                                                                       
Query: 449 ttcactccaaagatttgagcagacggaataagccagccgcttcccttattcgtgagaact 508
           |||||||||| || ||||| || ||||| || ||||| ||||||||||| ||||| || |
Sbjct: 932 ttcactccaacgacttgagtagccggaacaaaccagctgcttcccttatccgtgaaaatt 873

                                                                       
Query: 509 ctatgcagaacgcctgtacctcaatgaaaagatcttgaacgttaataatttgatttcgga 568
           | || |||||||| |||||||| |||||||| ||||||||||| ||||| |  |||||||
Sbjct: 872 caatacagaacgcttgtacctcgatgaaaaggtcttgaacgtttataatcttgtttcgga 813

                                                                       
Query: 569 tgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtacttatcct 628
           | || ||||| || ||||||||||| | |||||| |||||||| |||||||| |||||||
Sbjct: 812 taagactctgcagaaaaacacaaactagtctcacaagtctgttttgcatgtatttatcct 753

                                                                       
Query: 629 taatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctgtcggga 688
           | ||||||||||||||||| |||||||||| |||||| || ||||||||| |||| || |
Sbjct: 752 ttatgttttgacatgattggatacaatttgtgatgtactcatggacaaattctgttggaa 693

                                         
Query: 689 gttcaaccgcagtagtaagtctgtttacaa 718
           | ||||| |||||||| |||||||| ||||
Sbjct: 692 ggtcaacggcagtagtgagtctgttcacaa 663
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>dbj|AK099694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074F01, full
            insert sequence
          Length = 1577

 Score =  145 bits (73), Expect = 2e-31
 Identities = 157/185 (84%)
 Strand = Plus / Minus

                                                                        
Query: 481  ccagccgcttcccttattcgtgagaactctatgcagaacgcctgtacctcaatgaaaaga 540
            ||||||||||| |||||||| || ||| | |||||||||||||||||||| ||||| |||
Sbjct: 1356 ccagccgcttctcttattcgggaaaacgcaatgcagaacgcctgtacctcgatgaagaga 1297

                                                                        
Query: 541  tcttgaacgttaataatttgatttcggatgaggctctggaggaaaacacaaaccaatctc 600
            ||||| || || || || |  ||||| ||||| ||||| ||||||||||| || |  || 
Sbjct: 1296 tcttgcacatttattatcttgtttcgaatgagactctgtaggaaaacacatactagcctt 1237

                                                                        
Query: 601  accagtctgttctgcatgtacttatccttaatgttttgacatgattgaatacaatttgag 660
            || || ||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1236 actagcctgttttgcatgtatttatccttaatgttttgacatgatcgaatacagtttgag 1177

                 
Query: 661  atgta 665
            |||||
Sbjct: 1176 atgta 1172
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 445     tttcttcactccaaagatttgagcagacggaataagccagccgcttcccttattcgtgag 504
               |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 5067428 tttcttcactccaaagatttgagcagccggaataagccagctgcttcccttatccgtgag 5067369

                                                           
Query: 505     aactctatgcagaacgcctgtacctcaatgaaaagatcttgaac 548
               ||||| |||||||| || |||||||| ||||| || ||||||||
Sbjct: 5067368 aactcaatgcagaaagcttgtacctcgatgaagaggtcttgaac 5067325



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                           
Query: 626     ccttaatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctgtcg 685
               |||||| ||| ||||||||||| || ||||| |||||||| || ||||||||  ||||||
Sbjct: 5065757 ccttaacgttctgacatgattggatgcaattcgagatgtactcatggacaaactctgtcg 5065698

                                                
Query: 686     ggagttcaaccgcagtagtaagtctgtttacaa 718
               ||||||| || ||||||||||| ||||||||||
Sbjct: 5065697 ggagttctacagcagtagtaagcctgtttacaa 5065665



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                           
Query: 562     tttcggatgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtac 621
               |||||||||||   ||| |||||||||||||| | ||||||||  |||||||||||||| 
Sbjct: 5066460 tttcggatgagagactgaaggaaaacacaaactagtctcaccaacctgttctgcatgtat 5066401

                      
Query: 622     ttatcct 628
               |||||||
Sbjct: 5066400 ttatcct 5066394
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 445     tttcttcactccaaagatttgagcagacggaataagccagccgcttcccttattcgtgag 504
               |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 5067410 tttcttcactccaaagatttgagcagccggaataagccagctgcttcccttatccgtgag 5067351

                                                           
Query: 505     aactctatgcagaacgcctgtacctcaatgaaaagatcttgaac 548
               ||||| |||||||| || |||||||| ||||| || ||||||||
Sbjct: 5067350 aactcaatgcagaaagcttgtacctcgatgaagaggtcttgaac 5067307



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                           
Query: 626     ccttaatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctgtcg 685
               |||||| ||| ||||||||||| || ||||| |||||||| || ||||||||  ||||||
Sbjct: 5065739 ccttaacgttctgacatgattggatgcaattcgagatgtactcatggacaaactctgtcg 5065680

                                                
Query: 686     ggagttcaaccgcagtagtaagtctgtttacaa 718
               ||||||| || ||||||||||| ||||||||||
Sbjct: 5065679 ggagttctacagcagtagtaagcctgtttacaa 5065647



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                           
Query: 562     tttcggatgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtac 621
               |||||||||||   ||| |||||||||||||| | ||||||||  |||||||||||||| 
Sbjct: 5066442 tttcggatgagagactgaaggaaaacacaaactagtctcaccaacctgttctgcatgtat 5066383

                      
Query: 622     ttatcct 628
               |||||||
Sbjct: 5066382 ttatcct 5066376
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>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 112231

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                         
Query: 445   tttcttcactccaaagatttgagcagacggaataagccagccgcttcccttattcgtgag 504
             |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 38081 tttcttcactccaaagatttgagcagccggaataagccagctgcttcccttatccgtgag 38022

                                                         
Query: 505   aactctatgcagaacgcctgtacctcaatgaaaagatcttgaac 548
             ||||| |||||||| || |||||||| ||||| || ||||||||
Sbjct: 38021 aactcaatgcagaaagcttgtacctcgatgaagaggtcttgaac 37978



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                         
Query: 626   ccttaatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctgtcg 685
             |||||| ||| ||||||||||| || ||||| |||||||| || ||||||||  ||||||
Sbjct: 36410 ccttaacgttctgacatgattggatgcaattcgagatgtactcatggacaaactctgtcg 36351

                                              
Query: 686   ggagttcaaccgcagtagtaagtctgtttacaa 718
             ||||||| || ||||||||||| ||||||||||
Sbjct: 36350 ggagttctacagcagtagtaagcctgtttacaa 36318



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 562   tttcggatgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtac 621
             |||||||||||   ||| |||||||||||||| | ||||||||  |||||||||||||| 
Sbjct: 37113 tttcggatgagagactgaaggaaaacacaaactagtctcaccaacctgttctgcatgtat 37054

                    
Query: 622   ttatcct 628
             |||||||
Sbjct: 37053 ttatcct 37047
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>gb|BT023990.1| Zea mays clone EL01N0412C01 mRNA sequence
          Length = 1802

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                        
Query: 568  atgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgtacttatcc 627
            ||||||||||| || |||||||| || | |||||| ||||| || ||||| ||||| |||
Sbjct: 1228 atgaggctctgtagaaaaacacatactagtctcactagtctattttgcatatacttgtcc 1169

                                                                   
Query: 628  ttaatgttttgacatgattgaatacaatttgagatgtattcgtggacaaatcctg 682
            ||||||| || ||||||| ||||||| |||||||| || || || ||||||||||
Sbjct: 1168 ttaatgtcttcacatgatcgaatacagtttgagatatagtcatgaacaaatcctg 1114
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>gb|BT013686.1| Lycopersicon esculentum clone 132509R, mRNA sequence
          Length = 1534

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 111/135 (82%)
 Strand = Plus / Minus

                                                                        
Query: 501  tgagaactctatgcagaacgcctgtacctcaatgaaaagatcttgaacgttaataatttg 560
            ||||||||| ||||| || |||||||| |||||||| |||||||| || || || || | 
Sbjct: 1298 tgagaactcaatgcaaaatgcctgtacttcaatgaacagatcttggacattgatgatctt 1239

                                                                        
Query: 561  atttcggatgaggctctggaggaaaacacaaaccaatctcaccagtctgttctgcatgta 620
            ||| ||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||| ||
Sbjct: 1238 attccggatcaagctctgtaggaaaacacagaccagtcttactagtctgttttgcatata 1179

                           
Query: 621  cttatccttaatgtt 635
              ||||||| |||||
Sbjct: 1178 tctatccttgatgtt 1164
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>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0122P24, complete sequence
          Length = 136104

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 481   ccagccgcttcccttattcgtgagaactctatgcagaacgcctgtacctcaatgaaaaga 540
             ||||||||||| |||||||| || ||| | |||||||||||||||||||| ||||| |||
Sbjct: 24757 ccagccgcttctcttattcgggaaaacgcaatgcagaacgcctgtacctcgatgaagaga 24816

                  
Query: 541   tcttg 545
             |||||
Sbjct: 24817 tcttg 24821



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 626   ccttaatgttttgacatgattgaatacaatttgagatgta 665
             |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 26334 ccttaatgttttgacatgatcgaatacagtttgagatgta 26373
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                           
Query: 481     ccagccgcttcccttattcgtgagaactctatgcagaacgcctgtacctcaatgaaaaga 540
               ||||||||||| |||||||| || ||| | |||||||||||||||||||| ||||| |||
Sbjct: 7446041 ccagccgcttctcttattcgggaaaacgcaatgcagaacgcctgtacctcgatgaagaga 7445982

                    
Query: 541     tcttg 545
               |||||
Sbjct: 7445981 tcttg 7445977



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                       
Query: 626     ccttaatgttttgacatgattgaatacaatttgagatgta 665
               |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 7444464 ccttaatgttttgacatgatcgaatacagtttgagatgta 7444425
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                           
Query: 481     ccagccgcttcccttattcgtgagaactctatgcagaacgcctgtacctcaatgaaaaga 540
               ||||||||||| |||||||| || ||| | |||||||||||||||||||| ||||| |||
Sbjct: 7516127 ccagccgcttctcttattcgggaaaacgcaatgcagaacgcctgtacctcgatgaagaga 7516068

                    
Query: 541     tcttg 545
               |||||
Sbjct: 7516067 tcttg 7516063



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                       
Query: 626     ccttaatgttttgacatgattgaatacaatttgagatgta 665
               |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 7514550 ccttaatgttttgacatgatcgaatacagtttgagatgta 7514511
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>emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chromosome 4, complete
             sequence
          Length = 176049

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 133   aaatgtagaccaaccacagatag 155
             |||||||||||||||||||||||
Sbjct: 78916 aaatgtagaccaaccacagatag 78894
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>gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complete sequence
          Length = 174327

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   ttgaggaaaaacagagtattt 377
             |||||||||||||||||||||
Sbjct: 20491 ttgaggaaaaacagagtattt 20511
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>gb|AC138151.3| Mus musculus BAC clone RP24-294E11 from 7, complete sequence
          Length = 203368

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      ctggttgaaccaataaaacag 23
              |||||||||||||||||||||
Sbjct: 137483 ctggttgaaccaataaaacag 137503
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>ref|XM_424343.1| PREDICTED: Gallus gallus similar to aquaporin 11 (LOC426725), mRNA
          Length = 1214

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 507 ctctatgcagaacgcctgtacctc 530
           |||||||||||||||||| |||||
Sbjct: 829 ctctatgcagaacgcctgcacctc 806
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>ref|XM_426933.1| PREDICTED: Gallus gallus similar to aquaporin 11 (LOC429376),
           partial mRNA
          Length = 895

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 507 ctctatgcagaacgcctgtacctc 530
           |||||||||||||||||| |||||
Sbjct: 781 ctctatgcagaacgcctgcacctc 758
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>gb|AC147251.3| Mus musculus BAC clone RP24-114L16 from chromosome 18, complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    ggctctggaggaaaacacaa 591
              ||||||||||||||||||||
Sbjct: 152249 ggctctggaggaaaacacaa 152230
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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 572    ggctctggaggaaaacacaa 591
              ||||||||||||||||||||
Sbjct: 170133 ggctctggaggaaaacacaa 170152
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>gb|AC125146.3| Mus musculus BAC clone RP24-348B1 from chromosome 2, complete sequence
          Length = 212563

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 428    aaacttggataaacttgtttcttc 451
              ||||||| ||||||||||||||||
Sbjct: 140501 aaacttgtataaacttgtttcttc 140524
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>gb|AC127260.3| Mus musculus BAC clone RP24-315I3 from chromosome 3, complete sequence
          Length = 177195

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    accaataaaacagactacaa 30
             ||||||||||||||||||||
Sbjct: 97017 accaataaaacagactacaa 97036
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>gb|AC125037.4| Mus musculus BAC clone RP23-332H20 from chromosome 3, complete sequence
          Length = 207842

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     accaataaaacagactacaa 30
              ||||||||||||||||||||
Sbjct: 174462 accaataaaacagactacaa 174443
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>gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome 16, complete sequence
          Length = 204275

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 77     accaaaacatgcatctattatccgtcca 104
              |||||||||||||| |||||||| ||||
Sbjct: 124338 accaaaacatgcatttattatccttcca 124311
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>gb|AY266303.2| Bacteriophage Aeh1, complete genome
          Length = 233234

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 530   caatgaaaagatcttgaacg 549
             ||||||||||||||||||||
Sbjct: 46403 caatgaaaagatcttgaacg 46384
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>emb|AL160056.16| Human DNA sequence from clone RP11-239F3 on chromosome 1, complete
              sequence
          Length = 169491

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 627    cttaatgttttgacatgatt 646
              ||||||||||||||||||||
Sbjct: 114879 cttaatgttttgacatgatt 114860
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>emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chromosome 11 Contains part
              of a novel gene, the Efemp1 gene for epidermal growth
              factor-containing fibulin-like extracellular matrix protein
              1 and a laminin receptor 1 (ribosomal protein SA) (Lamr1)
              pseudogene, complete sequence
          Length = 178153

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 349    agttggaattgaggaaaaacagag 372
              ||||||||| ||||||||||||||
Sbjct: 138886 agttggaatggaggaaaaacagag 138863
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>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64
          Length = 196286

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 577    tggaggaaaacacaaaccaa 596
              ||||||||||||||||||||
Sbjct: 140811 tggaggaaaacacaaaccaa 140792
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>emb|AL049483.1|ATF20B18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20B18 (ESSA project)
          Length = 104738

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 577   tggaggaaaacacaaaccaa 596
             ||||||||||||||||||||
Sbjct: 90126 tggaggaaaacacaaaccaa 90107
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>emb|BX629347.20| Zebrafish DNA sequence from clone DKEY-103K21 in linkage group 12,
             complete sequence
          Length = 200079

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   aatgataccaccaacttatc 344
             ||||||||||||||||||||
Sbjct: 32165 aatgataccaccaacttatc 32184
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>emb|AL844587.19| Zebrafish DNA sequence from clone DKEY-7E14 in linkage group 12, complete
              sequence
          Length = 254964

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    aatgataccaccaacttatc 344
              ||||||||||||||||||||
Sbjct: 186256 aatgataccaccaacttatc 186275
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>gb|BC114205.1| Bos taurus cDNA clone MGC:139941 IMAGE:8285050, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 256 catcatctggccttgaacacccac 279
           |||||||||||||| |||||||||
Sbjct: 393 catcatctggccttcaacacccac 416
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>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence
          Length = 141820

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   cagattttgcaagaattcac 252
             ||||||||||||||||||||
Sbjct: 24912 cagattttgcaagaattcac 24893
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>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence
          Length = 161619

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   tggaattgaggaaaaacaga 371
             ||||||||||||||||||||
Sbjct: 78969 tggaattgaggaaaaacaga 78988
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>gb|S63858.1| Rhizobium sp. NGR234 orf 5' of rpoN gene, complete cds; and RpoN
            (rpoN) gene, partial cds
          Length = 1138

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 612  ctgcatgtacttatccttaa 631
            ||||||||||||||||||||
Sbjct: 1008 ctgcatgtacttatccttaa 1027
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>emb|BX929593.2| Gallus gallus finished cDNA, clone ChEST744p3
          Length = 1235

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 507 ctctatgcagaacgcctgtacctc 530
           |||||||||||||||||| |||||
Sbjct: 609 ctctatgcagaacgcctgcacctc 586
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>emb|BX930629.1| Gallus gallus finished cDNA, clone ChEST972o15
          Length = 876

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 507 ctctatgcagaacgcctgtacctc 530
           |||||||||||||||||| |||||
Sbjct: 246 ctctatgcagaacgcctgcacctc 223
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>gb|AF260232.1|AF260232 Trichinella spiralis unknown mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ccacagattttgcaagaatt 249
            ||||||||||||||||||||
Sbjct: 1449 ccacagattttgcaagaatt 1468
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>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete
              sequences
          Length = 198333

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 628    ttaatgttttgacatgattg 647
              ||||||||||||||||||||
Sbjct: 156672 ttaatgttttgacatgattg 156691
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>emb|CR925824.7| Zebrafish DNA sequence from clone DKEYP-66E4 in linkage group 10,
              complete sequence
          Length = 178116

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 638    gacatgattgaatacaatttgaga 661
              |||||||||||||| |||||||||
Sbjct: 117014 gacatgattgaatagaatttgaga 117037
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>gb|AF542649.1| Campylobacter jejuni strain RM1850 RloA (rloA) and RloB (rloB) genes
            and putative type I specificity subunit HsdS (hsdS) gene,
            hsdS-9 allele, complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agagtatttatcacttgata 388
            ||||||||||||||||||||
Sbjct: 2009 agagtatttatcacttgata 1990
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>gb|AF542648.1| Campylobacter jejuni strain RM1551 RloA (rloA) and RloB (rloB) genes
            and putative type I specificity subunit HsdS (hsdS) gene,
            hsdS-6 allele, complete cds
          Length = 3203

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agagtatttatcacttgata 388
            ||||||||||||||||||||
Sbjct: 2009 agagtatttatcacttgata 1990
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>gb|AF542645.1| Campylobacter jejuni strain RM1248 RloE (rloE) and RloG (rloG) genes
            and putative type I specificity subunit HsdS (hsdS) gene,
            hsdS-9 allele, complete cds
          Length = 2601

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agagtatttatcacttgata 388
            ||||||||||||||||||||
Sbjct: 1461 agagtatttatcacttgata 1442
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>gb|AF542641.1| Campylobacter jejuni strain RM1048 RloA (rloA) and RloB (rloB) genes,
            complete cds; and putative type I specificity subunit
            HsdS (hsdS) pseudogene, hsdS-9 allele, complete sequence
          Length = 3164

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agagtatttatcacttgata 388
            ||||||||||||||||||||
Sbjct: 2024 agagtatttatcacttgata 2005
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>gb|DQ331585.1| Synthetic construct Saccharomyces cerevisiae clone FLH202233.01X
           PES4 gene, complete sequence
          Length = 1836

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggccagacgactaccacgaa 302
           ||||||||||||||||||||
Sbjct: 134 ggccagacgactaccacgaa 153
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>gb|U76599.1|HUMCOL36 Human 180 kDa bullous pemphigoid antigen 2/type XVII collagen
           (BPAG2/COL17A1) gene, exon 46
          Length = 341

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 567 gatgaggctctggaggaaaa 586
           ||||||||||||||||||||
Sbjct: 310 gatgaggctctggaggaaaa 291
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>emb|AL672089.17| Mouse DNA sequence from clone RP23-295D9 on chromosome X, complete
              sequence
          Length = 215390

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    catctggccttgaacaccca 278
              ||||||||||||||||||||
Sbjct: 187240 catctggccttgaacaccca 187259
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>emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chromosome 4, complete
              sequence
          Length = 191662

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    gtccctttttatccactctt 199
              ||||||||||||||||||||
Sbjct: 111080 gtccctttttatccactctt 111061
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>emb|AL929065.4| Mouse DNA sequence from clone RP23-270H4 on chromosome 2, complete
              sequence
          Length = 173846

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 428    aaacttggataaacttgtttcttc 451
              ||||||| ||||||||||||||||
Sbjct: 157231 aaacttgtataaacttgtttcttc 157208
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>gb|M58481.1|RHMRPON Rhizobium sp. sigma factor 54 (rpoN) gene, complete cds
          Length = 1860

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 612 ctgcatgtacttatccttaa 631
           ||||||||||||||||||||
Sbjct: 127 ctgcatgtacttatccttaa 146
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>dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI complete DNA sequence
          Length = 270148

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ggccagacgactaccacgaa 302
              ||||||||||||||||||||
Sbjct: 199994 ggccagacgactaccacgaa 200013
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>dbj|D26442.1|YSCPES4 Yeast gene for PES4 PAB-like protein, complete cds
          Length = 2245

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggccagacgactaccacgaa 302
           ||||||||||||||||||||
Sbjct: 550 ggccagacgactaccacgaa 569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,385,910
Number of Sequences: 3902068
Number of extensions: 6385910
Number of successful extensions: 125539
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125315
Number of HSP's gapped (non-prelim): 222
length of query: 718
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 695
effective length of database: 17,143,297,704
effective search space: 11914591904280
effective search space used: 11914591904280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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