ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29o06 |
|---|---|
| Clone Library Name | barley_pub |
>CALX_PEA (O82709) Calnexin homolog precursor| Length = 551 Score = 65.9 bits (159), Expect = 5e-11 Identities = 36/71 (50%), Positives = 41/71 (57%) Frame = -2 Query: 480 FDILYKVADIPFLEPYKTKIIEVIEKGETQPNXXXXXXXXXXXXXXXXLFRTLFGGKKPV 301 FD+LYK+ADI FL K KIIE+IEKGE QPN FR +FGGKKP Sbjct: 447 FDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKKP- 505 Query: 300 APVKPAAETKK 268 A V+ E KK Sbjct: 506 ANVEANVEKKK 516
>CALX_SOYBN (Q39817) Calnexin homolog precursor| Length = 546 Score = 64.3 bits (155), Expect = 2e-10 Identities = 31/70 (44%), Positives = 39/70 (55%) Frame = -2 Query: 480 FDILYKVADIPFLEPYKTKIIEVIEKGETQPNXXXXXXXXXXXXXXXXLFRTLFGGKKPV 301 FD+LYK+ADIPFL +K+KI ++IEK E QPN FR +FGGKKP Sbjct: 442 FDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPA 501 Query: 300 APVKPAAETK 271 K T+ Sbjct: 502 KVEKKPERTE 511
>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor| Length = 532 Score = 63.2 bits (152), Expect = 4e-10 Identities = 34/81 (41%), Positives = 42/81 (51%) Frame = -2 Query: 480 FDILYKVADIPFLEPYKTKIIEVIEKGETQPNXXXXXXXXXXXXXXXXLFRTLFGGKKPV 301 FD+LYKVADI FL YK+KI+E+IEK ETQPN F+ +FGG Sbjct: 435 FDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGG---- 490 Query: 300 APVKPAAETKKPSAVVPDATA 238 K E KKP +T+ Sbjct: 491 --AKAKVEKKKPETAAETSTS 509
>CALX_HELTU (Q39994) Calnexin homolog precursor| Length = 540 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/71 (42%), Positives = 40/71 (56%) Frame = -2 Query: 480 FDILYKVADIPFLEPYKTKIIEVIEKGETQPNXXXXXXXXXXXXXXXXLFRTLFGGKKPV 301 FD+LYK+AD+PFL +K K++E+IEK ETQPN L + LFGGKK Sbjct: 436 FDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKAA 495 Query: 300 APVKPAAETKK 268 V + K+ Sbjct: 496 PKVNVVPKKKE 506
>CALX1_ARATH (P29402) Calnexin homolog 1 precursor| Length = 530 Score = 60.5 bits (145), Expect = 2e-09 Identities = 33/72 (45%), Positives = 39/72 (54%) Frame = -2 Query: 480 FDILYKVADIPFLEPYKTKIIEVIEKGETQPNXXXXXXXXXXXXXXXXLFRTLFGGKKPV 301 FD+L KVAD+ FL YK+KI E+IEK E QPN + +FGGKK Sbjct: 433 FDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKAA 492 Query: 300 APVKPAAETKKP 265 APV E KKP Sbjct: 493 APV----EKKKP 500
>SYE_RHOBA (Q7UNF9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 515 Score = 31.2 bits (69), Expect = 1.5 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +1 Query: 301 HWLLATKQGSEEYSHNDDNDGGQNRNCNVRLRLSLLNHFNDLGLVWFQERDV 456 +WLLA + G + DD D G+N + ++ +L+ F LG+ W + DV Sbjct: 25 NWLLAKQAGGQFILRIDDTDAGRNVDAALK---PILDGFRWLGMDWDEGPDV 73
>BTG2_HUMAN (P78543) BTG2 protein (NGF-inducible anti-proliferative protein| PC3) Length = 158 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/33 (42%), Positives = 25/33 (75%) Frame = +2 Query: 41 ISSDLKTRGCY*QQRVRLYTRGVLKKARAESFK 139 +SS L+TRGC +QR+++++ G L++A E +K Sbjct: 20 LSSLLRTRGCVSEQRLKVFS-GALQEALTEHYK 51
>GBRG3_HUMAN (Q99928) Gamma-aminobutyric-acid receptor gamma-3 subunit precursor| (GABA(A) receptor) Length = 467 Score = 29.3 bits (64), Expect = 5.6 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = -1 Query: 337 TLQNLVWWQEASGTCEARC*D----QEAQCCCS*C 245 TL N V+WQE TC C D Q CC C Sbjct: 390 TLNNSVYWQEFEDTCVYECLDGKDCQSFFCCYEEC 424
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1165 Score = 29.3 bits (64), Expect = 5.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 330 RTLFGGKKPVAPVKPAAETKKPSAVVPD 247 R L G KP P++PA E +P + PD Sbjct: 780 RVLAGTTKPQEPIEPAQEKTRPRELTPD 807
>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/45 (31%), Positives = 17/45 (37%) Frame = -1 Query: 388 EHYNFDSGLRRCRHCDCTLQNLVWWQEASGTCEARC*DQEAQCCC 254 EH+ + L CR CDC L G C + QC C Sbjct: 496 EHWGLSNDLDGCRPCDCDL---------GGALNNSCFAESGQCSC 531
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 309 KPVAPVKPAAETKKPSAVVPDATAGS 232 KP AP KPAA KP+ P A + + Sbjct: 82 KPGAPAKPAAPAAKPAPAAPSAASAA 107
>R51A1_HUMAN (Q96B01) RAD51-associated protein 1 (RAD51-interacting protein)| Length = 352 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 Query: 312 KKPVAPVKPAAETKKPSAVVPDATAGS 232 +KP+ P+AE+KKP V P A+ GS Sbjct: 287 RKPLEIRSPSAESKKPKWVPPAASGGS 313
>LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/45 (28%), Positives = 17/45 (37%) Frame = -1 Query: 388 EHYNFDSGLRRCRHCDCTLQNLVWWQEASGTCEARC*DQEAQCCC 254 +H+ + L CR CDC L G C + QC C Sbjct: 496 QHWGLSNDLDGCRPCDCDL---------GGALNNSCSEDSGQCSC 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,883,101 Number of Sequences: 219361 Number of extensions: 857076 Number of successful extensions: 2311 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2310 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
