ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29n18 |
|---|---|
| Clone Library Name | barley_pub |
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 218 bits (555), Expect = 1e-56 Identities = 104/122 (85%), Positives = 114/122 (93%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+EEPEK+Q HFSEY+KKGI Sbjct: 173 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 232 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNNSA 185 AD MEA+YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE+RKASLVERLNALN+SA Sbjct: 233 ADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292 Query: 184 GA 179 GA Sbjct: 293 GA 294
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 217 bits (552), Expect = 2e-56 Identities = 103/122 (84%), Positives = 114/122 (93%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+EEPEK+Q HFSEY+KKGI Sbjct: 173 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 232 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNNSA 185 AD ME++YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE+RKASLVERLNALN+SA Sbjct: 233 ADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292 Query: 184 GA 179 GA Sbjct: 293 GA 294
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 189 bits (479), Expect = 7e-48 Identities = 88/120 (73%), Positives = 104/120 (86%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPHSDKRFAG+ K+ + LD E+HRKYI+GGHVA YMR+L ++EPEKYQ+HFSEYIKKGI Sbjct: 172 IPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIE 231 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNNSA 185 AD++E +YKKVHAAIRA+P KS KP PK HKRYN KKLTY+ERKA LVERLNALN++A Sbjct: 232 ADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAA 291
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 179 bits (454), Expect = 5e-45 Identities = 83/121 (68%), Positives = 99/121 (81%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPHSDKRFAGF K+ K LDAEIHR YIYGGHV++YM+ L ++EPEK QTHFS YIKKG+ Sbjct: 172 IPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVE 231 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNNSA 185 A+ +E +YKKVHAAIRA+P+ K+ K APK HKRYN KKLTYEERK L+ER+ ALN + Sbjct: 232 AESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAG 291 Query: 184 G 182 G Sbjct: 292 G 292
>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)| Length = 121 Score = 162 bits (410), Expect = 7e-40 Identities = 77/109 (70%), Positives = 88/109 (80%) Frame = -2 Query: 508 KDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVH 329 KD K LDAE+HRKYIYGGHVA YM L ++EPEKYQ+HFS YIK ++ D++E +YKKVH Sbjct: 3 KDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVH 62 Query: 328 AAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNNSAG 182 AAIR DPS KS K PKTHKRYN KKLTYEERKA L+ERLNALN + G Sbjct: 63 AAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGG 111
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 115 bits (289), Expect = 7e-26 Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 8/123 (6%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 +PHS KRF G+ + K +AE+HR +I+G HVA+YMRSL ++ + ++ FS+YIK G++ Sbjct: 173 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 232 Query: 364 ADDMEAVYKKVHAAIRADPS-MAKSTKPAPKTHKRYNPKKLTYEER-------KASLVER 209 AD +EA+YKK H AIRADPS K K KR+N +KLT ER KAS ++R Sbjct: 233 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 292 Query: 208 LNA 200 L A Sbjct: 293 LQA 295
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 114 bits (285), Expect = 2e-25 Identities = 55/120 (45%), Positives = 78/120 (65%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF DIPHS KRF G+ + AE+HR +I+GGHV++YM+ L +E+ E Sbjct: 158 VFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 ++ FS+YIK G++AD +E +Y K HAAIR DP+ K T A KT KR+N KK+T+ +R+ Sbjct: 218 FKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276
>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)| Length = 301 Score = 112 bits (279), Expect = 1e-24 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 8/140 (5%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS+ RF G+ + + LDAE +KYI+GGHVA+YM +LAD++ E+ Sbjct: 162 VFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEER 221 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHK--------RYNPK 251 Y++ F+ YI+ + AD +E +Y + HAAIR DP K+ APK K +Y Sbjct: 222 YKSQFNRYIEDDLEADGLEDLYAEAHAAIREDP-FKKAESEAPKKTKEEWKAESLKYKKS 280 Query: 250 KLTYEERKASLVERLNALNN 191 KLT E+R A + ER+ AL + Sbjct: 281 KLTREQRAAGVQERIAALRS 300
>RL5_HELAN (O65353) 60S ribosomal protein L5| Length = 297 Score = 110 bits (276), Expect = 2e-24 Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 1/110 (0%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 I HS KRF GF + K +A++HR++I+G HVA+YMR LA+E+ E Y+ FS+YIK G++ Sbjct: 173 ILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLN 232 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPA-PKTHKRYNPKKLTYEERKASL 218 AD +E +YKK H AIRA+P+ K A PK KR+ KKLT E+R+ + Sbjct: 233 ADAIEGLYKKAHEAIRANPARKTVAKKAHPK--KRWTEKKLTREQRQGKV 280
>RL5_CAEEL (P49405) 60S ribosomal protein L5| Length = 293 Score = 109 bits (273), Expect = 5e-24 Identities = 52/112 (46%), Positives = 77/112 (68%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 +PHS+ RF GF ++ K +AE HR I G HVADYM L +E+ ++Y+ FS+++ G++ Sbjct: 172 VPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLN 231 Query: 364 ADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 209 AD++ A Y+KVH+AIRAD S A K A K KR+ K+LTY+ERK + ++ Sbjct: 232 ADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVADK 281
>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B| Length = 294 Score = 107 bits (268), Expect = 2e-23 Identities = 63/140 (45%), Positives = 76/140 (54%), Gaps = 3/140 (2%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS RF GF + + LD E RKYIYGGHVA+YM L D++ E+ Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPA---PKTHKRYNPKKLTYE 236 YQ FS I GI +D +E +Y + +A IR DPS KS K A +Y +KLT E Sbjct: 219 YQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAE 278 Query: 235 ERKASLVERLNALNNSAGAA 176 ERK ER NA AG A Sbjct: 279 ERK----ERFNAKVIEAGRA 294
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 107 bits (268), Expect = 2e-23 Identities = 51/112 (45%), Positives = 71/112 (63%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF DIPH++KRF G+ +K LD E+ +KYIYGGHVA+Y ++ +EEPEK Sbjct: 159 VFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEK 216 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPK 251 YQ HFS Y++ I D +E +YK+VHA IR +P K + P KR++P+ Sbjct: 217 YQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268
>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A| Length = 294 Score = 105 bits (263), Expect = 7e-23 Identities = 62/140 (44%), Positives = 76/140 (54%), Gaps = 3/140 (2%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS RF GF + + LD E RKYIYGGHVA+YM L D++ E+ Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPA---PKTHKRYNPKKLTYE 236 YQ FS I GI +D +E +Y + +A IR DPS KS K A ++ +KLT E Sbjct: 219 YQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAE 278 Query: 235 ERKASLVERLNALNNSAGAA 176 ERK ER NA AG A Sbjct: 279 ERK----ERFNAKVIEAGRA 294
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 105 bits (263), Expect = 7e-23 Identities = 50/126 (39%), Positives = 76/126 (60%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K + E+HRK+I+ ++A+YMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K Sbjct: 218 YKKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 105 bits (261), Expect = 1e-22 Identities = 51/126 (40%), Positives = 76/126 (60%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K + E+HRK+I+ +VA+YMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K Sbjct: 218 YKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 104 bits (260), Expect = 2e-22 Identities = 52/126 (41%), Positives = 75/126 (59%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K Sbjct: 218 YKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 104 bits (260), Expect = 2e-22 Identities = 52/126 (41%), Positives = 75/126 (59%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K Sbjct: 218 YKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 104 bits (259), Expect = 2e-22 Identities = 52/126 (41%), Positives = 75/126 (59%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K Sbjct: 218 YKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 104 bits (259), Expect = 2e-22 Identities = 52/126 (41%), Positives = 75/126 (59%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K Sbjct: 218 YKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 103 bits (258), Expect = 3e-22 Identities = 53/126 (42%), Positives = 74/126 (58%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF IPHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Sbjct: 158 VFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 227 Y+ FS+YIK I+ D ME +YKK HAAIR +P K K K KR N K++ ++K Sbjct: 218 YKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKK 276 Query: 226 ASLVER 209 + ++ Sbjct: 277 DRVAQK 282
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 97.1 bits (240), Expect = 3e-20 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Frame = -2 Query: 586 VFXXXXXXXXXXXDIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEK 407 VF +PHS+ RF G+ + + +D E+ R YI+GGHV+ YM LAD++ E+ Sbjct: 158 VFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEER 217 Query: 406 YQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTH-----KRYNPKKLT 242 + F Y+ I AD +E +Y H AIRADP+ + K K K+Y KL+ Sbjct: 218 FSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLS 277 Query: 241 YEERKASLVERLNAL 197 EER A + ++ AL Sbjct: 278 KEERAARVAAKIAAL 292
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 95.1 bits (235), Expect = 1e-19 Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPHS KRF G+ + KS +AE+HR +I+G HVA+YMR+L +E+ E ++ FS+YI GI Sbjct: 173 IPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIK 232 Query: 364 ADDMEAVYKKVHAAIR-ADPSMAKSTKPAPKTHKRY 260 ADD+E +YK HA+IR PS + +P++ R+ Sbjct: 233 ADDIENIYKNAHASIRKIPPSRRNPRRRSPRSGGRW 268
>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P| Length = 202 Score = 43.1 bits (100), Expect = 6e-04 Identities = 15/52 (28%), Positives = 35/52 (67%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAIRAD 311 I G H+A+ R + +E+PE+Y+ FS+Y+++G+ +++ +++V + I + Sbjct: 147 IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198
>RL18_PYRAE (Q8ZVV7) 50S ribosomal protein L18P| Length = 205 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G HVA+Y L +E PE Y+ FS Y+++G+ + + +++V I Sbjct: 143 IKGKHVAEYAEKLKEENPEAYKARFSRYLQRGLEPEKLPEHFEEVKKKI 191
>RL18_PYRAB (Q9V1V4) 50S ribosomal protein L18P| Length = 203 Score = 39.7 bits (91), Expect = 0.007 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+A+Y R L +++ EK++ F Y++KG+ + + + +V A I Sbjct: 144 IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
>RL18_SULTO (Q975J9) 50S ribosomal protein L18P| Length = 196 Score = 38.5 bits (88), Expect = 0.015 Identities = 17/59 (28%), Positives = 34/59 (57%) Frame = -2 Query: 490 DAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAIRA 314 D I I G H+A Y + L E PE ++ FS+Y+++G+ D+ + ++++ I++ Sbjct: 135 DLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDLPSHFEEILNKIKS 193
>RL18_METMP (Q6LXD4) 50S ribosomal protein L18P| Length = 193 Score = 38.1 bits (87), Expect = 0.019 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = -2 Query: 544 IPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGIS 365 IPH DK A DE+ L+ G HV +Y SL E+ + Y+ FS+Y++KG++ Sbjct: 130 IPHGDKIIA----DEERLN---------GTHVKNYAESLK-EDADAYKKQFSKYLEKGLN 175 Query: 364 ADDM 353 +D+ Sbjct: 176 PEDL 179
>RL18_PYRHO (O59438) 50S ribosomal protein L18P| Length = 203 Score = 38.1 bits (87), Expect = 0.019 Identities = 14/49 (28%), Positives = 31/49 (63%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+A+Y R L +++ ++++ F Y++KG+ + + +++V A I Sbjct: 144 IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLPEHFEEVKARI 192
>RL18_PYRFU (Q9HH80) 50S ribosomal protein L18P (PfL18)| Length = 203 Score = 38.1 bits (87), Expect = 0.019 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+A+Y + L +++ EK++ F Y+ KG+ + + +++V A I Sbjct: 144 IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARI 192
>RL18_PYRKO (Q5JJG7) 50S ribosomal protein L18P| Length = 201 Score = 37.7 bits (86), Expect = 0.025 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+A+Y ++L +E+ Y+ FS Y+ KG+ + + +++V A I Sbjct: 144 INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPEHFEEVKAKI 192
>RL18_METJA (P54044) 50S ribosomal protein L18P| Length = 195 Score = 37.7 bits (86), Expect = 0.025 Identities = 14/49 (28%), Positives = 30/49 (61%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+ Y L +++ E+Y+ FS+Y++KG+ + + ++++ A I Sbjct: 143 IRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191
>RL18_METVA (P14033) 50S ribosomal protein L18P| Length = 195 Score = 33.9 bits (76), Expect = 0.36 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = -2 Query: 460 GGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 G H+ Y L ++E E Y+ FS+Y++KG++ +D+ ++++ I Sbjct: 147 GTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192
>ZN674_HUMAN (Q2M3X9) Zinc finger protein 674| Length = 581 Score = 33.5 bits (75), Expect = 0.47 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = -2 Query: 403 QTHFSEYIKKGISADDMEAVYKKVHAAIR---ADPSMAKSTKPAPKTHKRYNPKKLTYE 236 +TH + KGI +Y+++H + + ++ A KP+P H R + K+ YE Sbjct: 328 KTHIRQAFYKGIKCTTSSLIYQRIHTSEKPQCSEHGKASDEKPSPTKHWRTHTKENIYE 386
>RL18_METTH (O26130) 50S ribosomal protein L18P| Length = 192 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAI 320 I G H+ +Y SL +EE K FS+Y+++G+S D+ + ++ I Sbjct: 143 IRGEHIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188
>RL18_SULAC (O05640) 50S ribosomal protein L18P| Length = 197 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 466 IYGGHVADYMRSLADEEPEKYQTHFSEYIKKGI 368 + G H++ Y + L +E E Y FS YI++G+ Sbjct: 143 VNGSHISAYAQKLKNENQELYNKLFSSYIQRGL 175
>SRYD_DROME (P07664) Serendipity locus protein delta| Length = 433 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = -2 Query: 535 SDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADD 356 +D F KD++ D EI R+++ DEE E+ E+I + + D Sbjct: 126 ADALFVELVKDQEESDTEIKREFV-------------DEEEEEDDDDDDEFICEDVDVGD 172 Query: 355 MEAVYKK 335 EA+Y K Sbjct: 173 SEALYGK 179
>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding| factor 1-A) (UBF-1-A) (xUBF-1) Length = 677 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -2 Query: 445 DYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPK 275 DY + LA+++ Y+T F ++ KG+S+ D A YK+ ++ R S AK P K Sbjct: 531 DYYKKLAEDQQRVYRTQFDTWM-KGLSSQD-RAAYKEQNSNKR--KSTAKIQVPVAK 583
>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 638 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 394 SEFGTSRVPHLLATSCSQQHALHRCTCGESQHP 492 S++ T+ SC Q H +H C+CG +P Sbjct: 373 SDYNTTYSIQACLHSCFQDHMIHNCSCGHYLYP 405
>NCKP1_ARATH (Q5S2C4) Protein NAP1 (Nck-associated protein 1) (AtNAP1)| (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) Length = 1425 Score = 30.0 bits (66), Expect = 5.2 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +2 Query: 332 NLLVNCFHVIS*DSLLDVLTEVSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLL 511 ++L N H + L +V + VLLG+L+C P + + SID+ V L ++ L Sbjct: 302 DILTNSAHPMRAQDLANVTSYREWVLLGYLVC--PDELLRVTSIDIALVVLKENLVVTLF 359 Query: 512 ETSKSL 529 SL Sbjct: 360 RDEVSL 365
>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 618 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +2 Query: 395 VSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLLETSKSLVT 535 +S L G ++ PHV++ P LA+ L + LLVL + +LVT Sbjct: 144 ISRTLKGTILLKMPHVLAEYPDFFALALVLLLTGLLVLGASKSALVT 190
>VTA1_YEAST (Q06263) Vacuolar protein sorting-associated protein VTA1| (VPS20-associated protein 1) Length = 330 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/84 (29%), Positives = 40/84 (47%) Frame = -2 Query: 427 ADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKK 248 AD E+ QT + + I+ D+ + V K+V + PS +PA HK Y + Sbjct: 231 ADSVNEEEQT--VDKNEDAITKDEQQVVKKEVDLTRPSAPS-----EPAAAEHKSYTKDE 283 Query: 247 LTYEERKASLVERLNALNNSAGAA 176 LT +AS +E++ L A +A Sbjct: 284 LTKIMDRASKIEQIQKLAKYAISA 307
>ODO1_RICCN (Q92J42) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 928 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Frame = -2 Query: 538 HSDKRFAGFKKDEKSLDAEIHRKYIYGG-------HVADYMRSLADEEPEKYQTHFSEYI 380 H D F G +SL Y GG + + + AD +Y T F++ I Sbjct: 350 HGDAAFCGQGVVAESLSMSPLAAYDIGGILHFVINNQLGFTANAADTRASRYSTEFAKII 409 Query: 379 KKGI---SADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRY 260 I + DD+EAV K + A+ K +++Y Sbjct: 410 AAPILHVNGDDIEAVLKATNIAVEYRQKFGKDVVVEIICYRKY 452
>RL5_RABIT (P19949) 60S ribosomal protein L5 (Fragments)| Length = 101 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -2 Query: 385 YIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 209 Y +K + D HAAIR +P K K K KR+N K++ ++K + ++ Sbjct: 30 YARKRLVIQDKNKYNTPAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 87
>GIDA_BORGA (Q662I6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 621 Score = 29.3 bits (64), Expect = 8.8 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Frame = -2 Query: 535 SDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISADD 356 SDKR D +D E + KY++ + ++ L + + E +KK +S D Sbjct: 441 SDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRLSLKDVADEQLKKHVSKDF 500 Query: 355 MEAVYK---KVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNAL 197 + + I+ DPS++ S + + K Y R+ L+++LN L Sbjct: 501 YHILKDPSISLDNLIKIDPSLSDSKVILEQV--ELDVKYEGYINRQKDLIKKLNNL 554
>ZN622_CHICK (Q90Y35) Zinc finger protein 622 (Zn-finger protein C47)| Length = 405 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Frame = -2 Query: 529 KRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYIKKGISAD--D 356 KRF+ F E L ++ H + + +K + + ++KG++ + D Sbjct: 74 KRFSTFNAYENHLKSKKH---------LELEKKAVQAVSKKVKILNEKNLEKGLAVESVD 124 Query: 355 MEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNP 254 + + + AIRA PS + P P +H +P Sbjct: 125 KDEMNAAIQQAIRAQPSSSPKKVPLPPSHASSSP 158
>CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 619 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 395 VSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLLETSKSLVT 535 +S L G ++ PHV++ P LA+ L + LLVL LVT Sbjct: 144 ISQTLKGTILLNMPHVLAEYPDFFALALVLLLTGLLVLGANESGLVT 190
>UBF1B_XENLA (P25980) Nucleolar transcription factor 1-B (Upstream binding| factor 1-B) (UBF-1-B) (xUBF-2) Length = 701 Score = 29.3 bits (64), Expect = 8.8 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 445 DYMRSLADEEPEKYQTHFSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKT 272 DY + LA+++ Y+T F ++ KG+S D A YK+ + R S K P+ K+ Sbjct: 553 DYYKKLAEDQQRLYRTQFDTWM-KGLSTQD-RAAYKEQNTNKR--KSTTKIQAPSSKS 606
>PTPR2_MOUSE (P80560) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP IA-2beta) (Protein tyrosine phosphatase-NP) (PTP-NP) Length = 1001 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 254 QEAHLRGEEGQPRREAQRPQQL 189 QE+H RG EGQPR + P+ + Sbjct: 340 QESHGRGAEGQPREQTDAPETM 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,906,782 Number of Sequences: 219361 Number of extensions: 1404085 Number of successful extensions: 4868 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 4675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4853 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
