Clone Information

BLAST Search Result

Clone Name	rbags29n16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_480176.1\| Oryza sativa (japonica cultivar-group), mRNA	335	1e-88
2	dbj\|AK070710.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	1e-88
3	gb\|BT017878.1\| Zea mays clone EL01N0513H07.c mRNA sequence	244	3e-61
4	gb\|AY106385.1\| Zea mays PCO066310 mRNA sequence	244	3e-61
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
6	dbj\|AP004460.2\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
7	gb\|AC105324.11\| Mus musculus chromosome 15, clone RP24-311E18, c...	44	0.51
8	gb\|AC130546.4\| Mus musculus BAC clone RP24-303D11 from chromosom...	44	0.51
9	gb\|AC106818.2\| Homo sapiens chromosome 5 clone RP11-65F13, compl...	44	0.51
10	gb\|AC114961.2\| Homo sapiens chromosome 5 clone RP11-193H19, comp...	44	0.51
11	gb\|AC102052.7\| Mus musculus chromosome 3, clone RP23-460F15, com...	42	2.0
12	emb\|CR937048.1\|RN139I21 Rattus norvegicus chromosome 1 BAC CH230...	42	2.0
13	gb\|AC148237.7\| Medicago truncatula clone mth2-1o14, complete seq...	42	2.0
14	emb\|CR522870.1\| Desulfotalea psychrophila LSv54 chromosome	42	2.0
15	emb\|AL161517.2\|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ...	42	2.0
16	emb\|AL049524.1\|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA...	42	2.0
17	gb\|AC115020.11\| Mus musculus chromosome 1, clone RP24-231D14, co...	42	2.0
18	gb\|AF118222.1\|F3H7 Arabidopsis thaliana BAC F3H7	42	2.0
19	dbj\|AB066273.1\| Oncorhynchus masou sBimR mRNA for bifunctional m...	42	2.0
20	ref\|NM_123067.1\| Arabidopsis thaliana unknown protein AT5G37080 ...	40	7.9
21	ref\|NM_116806.2\| Arabidopsis thaliana unknown protein AT4G07340 ...	40	7.9
22	ref\|NM_197267.1\| Oryza sativa (japonica cultivar-group) putative...	40	7.9
23	gb\|AF493565.1\| Kluyveromyces lactis hypothetical protein, YGL104...	40	7.9
24	ref\|XM_455390.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0F06831g ...	40	7.9
25	ref\|XM_455389.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0F06820g ...	40	7.9
26	gb\|AC153009.4\| Mus musculus BAC clone RP23-408I18 from chromosom...	40	7.9
27	gb\|AC158987.3\| Mus musculus BAC clone RP23-366K1 from chromosome...	40	7.9
28	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	7.9
29	gb\|AC139174.3\| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genom...	40	7.9
30	gb\|CP000270.1\| Burkholderia xenovorans LB400 chromosome 1, compl...	40	7.9
31	gb\|AC015920.14\| Homo sapiens chromosome 17, clone CTD-3022L24, c...	40	7.9
32	emb\|AL096829.17\|HSJ595K12 Human DNA sequence from clone RP4-595K...	40	7.9
33	gb\|AC158575.3\| Mus musculus chromosome 7, clone RP23-275H16, com...	40	7.9
34	emb\|CR382126.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	40	7.9
35	emb\|AL161505.2\|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, ...	40	7.9
36	emb\|BX530081.6\| Zebrafish DNA sequence from clone CH211-121B13 i...	40	7.9
37	gb\|AC090870.13\| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen...	40	7.9
38	gb\|AC074111.2\| Arabidopsis thaliana chromosome 1 BAC T18N24 geno...	40	7.9
39	gb\|AC115085.4\| Homo sapiens chromosome 17, clone RP11-280F10, co...	40	7.9
40	gb\|AC159883.2\| Mus musculus BAC clone RP24-490A17 from chromosom...	40	7.9
41	gb\|AC098867.3\| Homo sapiens BAC clone RP11-493C20 from 4, comple...	40	7.9
42	gb\|AC093156.2\| Homo sapiens chromosome 1 clone RP11-87O11, compl...	40	7.9
43	gb\|AC016525.11\| Homo sapiens chromosome 15 clone RP11-358M11 map...	40	7.9
44	gb\|AC104340.10\| Mus musculus chromosome 7, clone RP24-495M13, co...	40	7.9
45	ref\|NM_073643.2\| Caenorhabditis elegans C27A7.1 (C27A7.1) mRNA, ...	40	7.9
46	gb\|AC025271.7\|AC025271 Homo sapiens chromosome 15 clone CTD-2515...	40	7.9
47	emb\|BX510917.5\| Zebrafish DNA sequence from clone CH211-250O15 i...	40	7.9
48	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
49	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
50	gb\|AC073433.9\|AC073433 Arabidopsis thaliana chromosome 1 BAC F19...	40	7.9
51	dbj\|AB017068.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	7.9
52	gb\|U91319.1\|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S...	40	7.9
53	dbj\|AK058656.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.9
54	emb\|Z81041.1\|CEC27A7 Caenorhabditis elegans Cosmid C27A7, comple...	40	7.9
55	gb\|AF147262.1\|F28D6 Arabidopsis thaliana BAC F28D6	40	7.9
56	gb\|AY756225.1\| Verticillium dahliae var. longisporum clone 159 5...	40	7.9
57	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
58	gb\|AC139382.3\| Mus musculus BAC clone RP23-30B24 from 12, comple...	40	7.9
59	dbj\|AP002340.3\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	7.9

>ref|XM_480176.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1130

 Score =  335 bits (169), Expect = 1e-88
 Identities = 347/405 (85%), Gaps = 6/405 (1%)
 Strand = Plus / Minus

                                                                       
Query: 178 aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
           ||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||||| |||
Sbjct: 882 aaagaattatgacttcatcatatagcccaagaagatcccgatcaaggcgacaattatgac 823

                                                                       
Query: 238 aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatctag 297
            ||||  ||||| ||||||||   |||| ||||||| |  ||||||||||||||||| ||
Sbjct: 822 gattatgaaggagaaccctcc---gcgcttcttgcttatctcccgtctcatcatatccag 766

                                                                       
Query: 298 ttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttgga 357
           |||||||||||||||||||||||||||||||||||| ||||| |||||  |||| |||  
Sbjct: 765 ttcctgtctaattttatggttctgttgaattgcagagttcttctcttcattcaatttgtt 706

                                                                       
Query: 358 gatcaaagctccagcctctaaagatttttcttggggatcaatgcgctctcgcagtgccct 417
            |||||||||||||||||||| || |||||||| || |||||||| |||| |||||| ||
Sbjct: 705 aatcaaagctccagcctctaatgaattttcttgaggctcaatgcgttctctcagtgctct 646

                                                                       
Query: 418 ggtgaatcccccagcaggaccatctccattttctgattc---aaccctagatggggagcc 474
            ||||| |||||| || |||  |||||||||||||| ||   |||||| |||||||| ||
Sbjct: 645 agtgaaacccccaccaagactgtctccattttctgactcagaaacccttgatggggaacc 586

                                                                       
Query: 475 ttcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcg 534
           ||| || ||||| || ||||| |||||||||||||||||||| |||| |||||| |||||
Sbjct: 585 ttcttctgattcctcgggaacaggagatggtggctgtggaggagcaatataggtcactcg 526

                                                        
Query: 535 caatttcacctcttcaatcttatttccagattccttcataaacat 579
           |||||| |||||||||| ||||||||| || |||||| |||||||
Sbjct: 525 caattttacctcttcaaccttatttccggactccttcgtaaacat 481



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 54  actcctatattgacaaaacataaaggagaactt 86
           |||||||||||||||||||| ||||||||||||
Sbjct: 987 actcctatattgacaaaacagaaaggagaactt 955

to top

>dbj|AK070710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062F08, full
           insert sequence
          Length = 1130

 Score =  335 bits (169), Expect = 1e-88
 Identities = 347/405 (85%), Gaps = 6/405 (1%)
 Strand = Plus / Minus

                                                                       
Query: 178 aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
           ||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||||| |||
Sbjct: 882 aaagaattatgacttcatcatatagcccaagaagatcccgatcaaggcgacaattatgac 823

                                                                       
Query: 238 aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatctag 297
            ||||  ||||| ||||||||   |||| ||||||| |  ||||||||||||||||| ||
Sbjct: 822 gattatgaaggagaaccctcc---gcgcttcttgcttatctcccgtctcatcatatccag 766

                                                                       
Query: 298 ttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttgga 357
           |||||||||||||||||||||||||||||||||||| ||||| |||||  |||| |||  
Sbjct: 765 ttcctgtctaattttatggttctgttgaattgcagagttcttctcttcattcaatttgtt 706

                                                                       
Query: 358 gatcaaagctccagcctctaaagatttttcttggggatcaatgcgctctcgcagtgccct 417
            |||||||||||||||||||| || |||||||| || |||||||| |||| |||||| ||
Sbjct: 705 aatcaaagctccagcctctaatgaattttcttgaggctcaatgcgttctctcagtgctct 646

                                                                       
Query: 418 ggtgaatcccccagcaggaccatctccattttctgattc---aaccctagatggggagcc 474
            ||||| |||||| || |||  |||||||||||||| ||   |||||| |||||||| ||
Sbjct: 645 agtgaaacccccaccaagactgtctccattttctgactcagaaacccttgatggggaacc 586

                                                                       
Query: 475 ttcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcg 534
           ||| || ||||| || ||||| |||||||||||||||||||| |||| |||||| |||||
Sbjct: 585 ttcttctgattcctcgggaacaggagatggtggctgtggaggagcaatataggtcactcg 526

                                                        
Query: 535 caatttcacctcttcaatcttatttccagattccttcataaacat 579
           |||||| |||||||||| ||||||||| || |||||| |||||||
Sbjct: 525 caattttacctcttcaaccttatttccggactccttcgtaaacat 481



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 54  actcctatattgacaaaacataaaggagaactt 86
           |||||||||||||||||||| ||||||||||||
Sbjct: 987 actcctatattgacaaaacagaaaggagaactt 955

to top

>gb|BT017878.1| Zea mays clone EL01N0513H07.c mRNA sequence
          Length = 766

 Score =  244 bits (123), Expect = 3e-61
 Identities = 335/405 (82%), Gaps = 3/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 178 aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
           ||||||| | |||||||||| |||||| |||| |   ||||||| ||| ||||||| |||
Sbjct: 502 aaagaattacgacttcatcaggtagccgaggatggcgccgatcagagcaacaattatgac 443

                                                                       
Query: 238 aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatctag 297
            |  |  ||||| || || || || |||||||||||||  ||| | |||| ||  || ||
Sbjct: 442 gacgatgaaggagaagccccctccacgcctcttgctgatctcctgcctcaccaagtcaag 383

                                                                       
Query: 298 ttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttgga 357
           ||||||||||| | |||| ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 382 ttcctgtctaagtctatgattctgttgaatcgcggaattcttctcttcagtcaacttgga 323

                                                                       
Query: 358 gatcaaagctccagcctctaaagatttttcttggggatcaatgcgctctcgcagtgccct 417
            | ||||||||||||||||  |||||| ||||| || |||||||||||||  ||||| ||
Sbjct: 322 aaccaaagctccagcctctgtagatttgtcttgaggctcaatgcgctctcttagtgctct 263

                                                                       
Query: 418 ggtgaatcccccagcaggaccatctccattttctgattc---aaccctagatggggagcc 474
           ||||||||| |||| ||| |||||||| |||||||||||   | |||||| ||| || ||
Sbjct: 262 ggtgaatcctccagaaggtccatctccgttttctgattcagaagccctaggtggagaacc 203

                                                                       
Query: 475 ttcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcg 534
           ||| || ||||| || ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 202 ttcttcagattcctctggaactggagagggtggctgtggaggagcaacataggtcactcg 143

                                                        
Query: 535 caatttcacctcttcaatcttatttccagattccttcataaacat 579
           |||||| |||||||| |||||||  ||||| |||||| |||||||
Sbjct: 142 caatttgacctcttccatcttatacccagactccttcgtaaacat 98

to top

>gb|AY106385.1| Zea mays PCO066310 mRNA sequence
          Length = 1083

 Score =  244 bits (123), Expect = 3e-61
 Identities = 335/405 (82%), Gaps = 3/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 178 aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
           ||||||| | |||||||||| |||||| |||| |   ||||||| ||| ||||||| |||
Sbjct: 807 aaagaattacgacttcatcaggtagccgaggatggcgccgatcagagcaacaattatgac 748

                                                                       
Query: 238 aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatctag 297
            |  |  ||||| || || || || |||||||||||||  ||| | |||| ||  || ||
Sbjct: 747 gacgatgaaggagaagccccctccacgcctcttgctgatctcctgcctcaccaagtcaag 688

                                                                       
Query: 298 ttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttgga 357
           ||||||||||| | |||| ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 687 ttcctgtctaagtctatgattctgttgaatcgcggaattcttctcttcagtcaacttgga 628

                                                                       
Query: 358 gatcaaagctccagcctctaaagatttttcttggggatcaatgcgctctcgcagtgccct 417
            | ||||||||||||||||  |||||| ||||| || |||||||||||||  ||||| ||
Sbjct: 627 aaccaaagctccagcctctgtagatttgtcttgaggctcaatgcgctctcttagtgctct 568

                                                                       
Query: 418 ggtgaatcccccagcaggaccatctccattttctgattc---aaccctagatggggagcc 474
           ||||||||| |||| ||| |||||||| |||||||||||   | |||||| ||| || ||
Sbjct: 567 ggtgaatcctccagaaggtccatctccgttttctgattcagaagccctaggtggagaacc 508

                                                                       
Query: 475 ttcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcg 534
           ||| || ||||| || ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 507 ttcttcagattcctctggaactggagagggtggctgtggaggagcaacataggtcactcg 448

                                                        
Query: 535 caatttcacctcttcaatcttatttccagattccttcataaacat 579
           |||||| |||||||| |||||||  ||||| |||||| |||||||
Sbjct: 447 caatttgacctcttccatcttatacccagactccttcgtaaacat 403

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 4e-26
 Identities = 138/162 (85%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                           
Query: 419     gtgaatcccccagcaggaccatctccattttctgattca---accctagatggggagcct 475
               ||||| |||||| || |||  |||||||||||||| |||   ||||| |||||||| |||
Sbjct: 3281669 gtgaaacccccaccaagactgtctccattttctgactcagaaacccttgatggggaacct 3281728

                                                                           
Query: 476     tcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcgc 535
               || || ||||| || ||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 3281729 tcttctgattcctcgggaacaggagatggtggctgtggaggagcaatataggtcactcgc 3281788

                                                         
Query: 536     aatttcacctcttcaatcttatttccagattccttcataaac 577
               ||||| |||||||||| ||||||||| || |||||| |||||
Sbjct: 3281789 aattttacctcttcaaccttatttccggactccttcgtaaac 3281830



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                           
Query: 296     agttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttg 355
               |||||||||||||||||||||||||||||||||||||| ||||| |||||  |||| |||
Sbjct: 3281292 agttcctgtctaattttatggttctgttgaattgcagagttcttctcttcattcaatttg 3281351

                                  
Query: 356     gagatcaaagctccagcct 374
                  ||||||||||||||||
Sbjct: 3281352 ttaatcaaagctccagcct 3281370



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 100/117 (85%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                           
Query: 178     aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
               ||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||||| |||
Sbjct: 3278999 aaagaattatgacttcatcatatagcccaagaagatcccgatcaaggcgacaattatgac 3279058

                                                                        
Query: 238     aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatc 294
                ||||  ||||| ||||||   |||||| ||||||| |  |||||||||||||||||
Sbjct: 3279059 gattatgaaggagaaccct---ccgcgcttcttgcttatctcccgtctcatcatatc 3279112



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 54      actcctatattgacaaaacataaaggagaactt 86
               |||||||||||||||||||| ||||||||||||
Sbjct: 3278894 actcctatattgacaaaacagaaaggagaactt 3278926

to top

>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0438H08
          Length = 148626

 Score =  127 bits (64), Expect = 4e-26
 Identities = 138/162 (85%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                         
Query: 419   gtgaatcccccagcaggaccatctccattttctgattca---accctagatggggagcct 475
             ||||| |||||| || |||  |||||||||||||| |||   ||||| |||||||| |||
Sbjct: 59236 gtgaaacccccaccaagactgtctccattttctgactcagaaacccttgatggggaacct 59295

                                                                         
Query: 476   tcctcggattcttcaggaactggagatggtggctgtggaggtgcaacataggtgactcgc 535
             || || ||||| || ||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 59296 tcttctgattcctcgggaacaggagatggtggctgtggaggagcaatataggtcactcgc 59355

                                                       
Query: 536   aatttcacctcttcaatcttatttccagattccttcataaac 577
             ||||| |||||||||| ||||||||| || |||||| |||||
Sbjct: 59356 aattttacctcttcaaccttatttccggactccttcgtaaac 59397



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                         
Query: 296   agttcctgtctaattttatggttctgttgaattgcagaattcttttcttcggtcaacttg 355
             |||||||||||||||||||||||||||||||||||||| ||||| |||||  |||| |||
Sbjct: 58859 agttcctgtctaattttatggttctgttgaattgcagagttcttctcttcattcaatttg 58918

                                
Query: 356   gagatcaaagctccagcct 374
                ||||||||||||||||
Sbjct: 58919 ttaatcaaagctccagcct 58937



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 100/117 (85%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                         
Query: 178   aaagaatcatgacttcatcatgtagcccaggaagatcccgatcaaagctacaattacgac 237
             ||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||||| |||
Sbjct: 56566 aaagaattatgacttcatcatatagcccaagaagatcccgatcaaggcgacaattatgac 56625

                                                                      
Query: 238   aattacaaaggaaaaccctccaccgcgcctcttgctgacttcccgtctcatcatatc 294
              ||||  ||||| ||||||   |||||| ||||||| |  |||||||||||||||||
Sbjct: 56626 gattatgaaggagaaccct---ccgcgcttcttgcttatctcccgtctcatcatatc 56679



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 54    actcctatattgacaaaacataaaggagaactt 86
             |||||||||||||||||||| ||||||||||||
Sbjct: 56461 actcctatattgacaaaacagaaaggagaactt 56493

to top

>gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, complete sequence
          Length = 171004

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 191   ttcatcatgtagcccaggaagatccc 216
             ||||||||||||||||||| ||||||
Sbjct: 60924 ttcatcatgtagcccaggatgatccc 60899

to top

>gb|AC130546.4| Mus musculus BAC clone RP24-303D11 from chromosome 3, complete sequence
          Length = 171125

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 227   acaattacgacaattacaaaggaaaa 252
             ||||||||||||||||||||| ||||
Sbjct: 34082 acaattacgacaattacaaagaaaaa 34107

to top

>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence
          Length = 180056

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     atgaaattaacaacaaaagaag 22
             ||||||||||||||||||||||
Sbjct: 13129 atgaaattaacaacaaaagaag 13108

to top

>gb|AC114961.2| Homo sapiens chromosome 5 clone RP11-193H19, complete sequence
          Length = 53552

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     atgaaattaacaacaaaagaag 22
             ||||||||||||||||||||||
Sbjct: 50929 atgaaattaacaacaaaagaag 50908

to top

>gb|AC102052.7| Mus musculus chromosome 3, clone RP23-460F15, complete sequence
          Length = 175306

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 347   gtcaacttggagatcaaagct 367
             |||||||||||||||||||||
Sbjct: 35504 gtcaacttggagatcaaagct 35484

to top

>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 370    agcctctaaagatttttcttg 390
              |||||||||||||||||||||
Sbjct: 106351 agcctctaaagatttttcttg 106331

to top

>gb|AC148237.7| Medicago truncatula clone mth2-1o14, complete sequence
          Length = 116678

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 490    aggaactggagatggtggctgtggaggtg 518
              ||||||||||| ||||||| |||||||||
Sbjct: 108979 aggaactggaggtggtggcggtggaggtg 109007

to top

>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 105    atgatcttttcaagttcccaaacat 129
              ||||| |||||||||||||||||||
Sbjct: 587234 atgatgttttcaagttcccaaacat 587258

to top

>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     tactcctatattgacaaaaca 73
              |||||||||||||||||||||
Sbjct: 128963 tactcctatattgacaaaaca 128943

to top

>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    tactcctatattgacaaaaca 73
             |||||||||||||||||||||
Sbjct: 69000 tactcctatattgacaaaaca 68980

to top

>gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, complete sequence
          Length = 188569

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 185   catgacttcatcatgtagcccagga 209
             ||||||||||| |||||||||||||
Sbjct: 79848 catgacttcattatgtagcccagga 79824

to top

>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    tactcctatattgacaaaaca 73
             |||||||||||||||||||||
Sbjct: 77663 tactcctatattgacaaaaca 77683

to top

>dbj|AB066273.1| Oncorhynchus masou sBimR mRNA for bifunctional metabotropic receptor
            for extracellular calcium and glutamate, complete cds
          Length = 4326

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 197  atgtagcccaggaagatcccg 217
            |||||||||||||||||||||
Sbjct: 2152 atgtagcccaggaagatcccg 2132

to top

>ref|NM_123067.1| Arabidopsis thaliana unknown protein AT5G37080 mRNA, complete cds
          Length = 1701

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 438  catctccattttctgattcaaccctaga 465
            |||||||||||||||| | |||||||||
Sbjct: 1549 catctccattttctgagttaaccctaga 1522

to top

>ref|NM_116806.2| Arabidopsis thaliana unknown protein AT4G07340 mRNA, complete cds
          Length = 1305

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 438  catctccattttctgattcaaccctaga 465
            |||||||||||||||| | |||||||||
Sbjct: 1141 catctccattttctgagttaaccctaga 1114

to top

>ref|NM_197267.1| Oryza sativa (japonica cultivar-group) putative vesicle-associated
           membrane protein (OSJNBb0015K05.13), mRNA
          Length = 828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 328 tgcagaattcttttcttcggtcaa 351
           |||||| |||||||||||||||||
Sbjct: 687 tgcagacttcttttcttcggtcaa 664

to top

>gb|AF493565.1| Kluyveromyces lactis hypothetical protein, YGL104C, YGL102C-like
            protein, and RPL28 genes, complete cds
          Length = 5201

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 336  tcttttcttcggtcaacttggaga 359
            |||||||||||| |||||||||||
Sbjct: 5011 tcttttcttcggccaacttggaga 4988

to top

>ref|XM_455390.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06831g predicted mRNA
          Length = 450

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 336 tcttttcttcggtcaacttggaga 359
           |||||||||||| |||||||||||
Sbjct: 412 tcttttcttcggccaacttggaga 389

to top

>ref|XM_455389.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06820g predicted mRNA
          Length = 459

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 336 tcttttcttcggtcaacttggaga 359
           |||||||||||| |||||||||||
Sbjct: 66  tcttttcttcggccaacttggaga 89

to top

>gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosome 9, complete sequence
          Length = 194871

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   cttggagatcaaagctccagcctc 375
             |||||||| |||||||||||||||
Sbjct: 43591 cttggagaccaaagctccagcctc 43568

to top

>gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome 9, complete sequence
          Length = 222125

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     aggagaacttgaagacattt 96
              ||||||||||||||||||||
Sbjct: 217822 aggagaacttgaagacattt 217803

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 165      tgatactgatagaaaagaatcatg 188
                |||||||| |||||||||||||||
Sbjct: 25642797 tgatactgctagaaaagaatcatg 25642820

to top

>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete
             sequence
          Length = 167427

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   tgatactgatagaaaagaatcatg 188
             |||||||| |||||||||||||||
Sbjct: 59554 tgatactgctagaaaagaatcatg 59531

to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     cggattcttcaggaactgga 499
               ||||||||||||||||||||
Sbjct: 3429609 cggattcttcaggaactgga 3429590

to top

>gb|AC015920.14| Homo sapiens chromosome 17, clone CTD-3022L24, complete sequence
          Length = 150453

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   agatggtggctgtggaggtg 518
             ||||||||||||||||||||
Sbjct: 47686 agatggtggctgtggaggtg 47705

to top

>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3
           Contains the 5' end of a novel gene (MGC34032) and a
           ribosomal protein L29 (RPL29) pseudogene, complete
           sequence
          Length = 135983

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  acaaaacataaaggagaacttgaa 89
           |||||||||||||||||| |||||
Sbjct: 309 acaaaacataaaggagaatttgaa 332

to top

>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence
          Length = 221489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    caacaaaagaagcttaaact 30
             ||||||||||||||||||||
Sbjct: 33055 caacaaaagaagcttaaact 33074

to top

>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    tcttttcttcggtcaacttggaga 359
              |||||||||||| |||||||||||
Sbjct: 654694 tcttttcttcggccaacttggaga 654717

to top

>emb|AL161505.2|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 17
          Length = 198176

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 438   catctccattttctgattcaaccctaga 465
             |||||||||||||||| | |||||||||
Sbjct: 81051 catctccattttctgagttaaccctaga 81078

to top

>emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 in linkage group 14,
             complete sequence
          Length = 162058

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 489   caggaactggagatggtggctgtggagg 516
             ||||||||| ||||||||||||| ||||
Sbjct: 36858 caggaactgaagatggtggctgtagagg 36885

to top

>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
             sequence
          Length = 123292

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   tgcagaattcttttcttcggtcaa 351
             |||||| |||||||||||||||||
Sbjct: 97300 tgcagacttcttttcttcggtcaa 97277

to top

>gb|AC074111.2| Arabidopsis thaliana chromosome 1 BAC T18N24 genomic sequence, complete
             sequence
          Length = 98536

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 438   catctccattttctgattcaaccctaga 465
             |||||||||||||||| | |||||||||
Sbjct: 13867 catctccattttctgagttaaccctaga 13840

to top

>gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, complete sequence
          Length = 163229

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   agatggtggctgtggaggtg 518
             ||||||||||||||||||||
Sbjct: 43425 agatggtggctgtggaggtg 43406

to top

>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    aggagaacttgaagacattt 96
             ||||||||||||||||||||
Sbjct: 96067 aggagaacttgaagacattt 96086

to top

>gb|AC098867.3| Homo sapiens BAC clone RP11-493C20 from 4, complete sequence
          Length = 142314

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   ataaaggagaacttgaagac 92
            ||||||||||||||||||||
Sbjct: 2051 ataaaggagaacttgaagac 2032

to top

>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence
          Length = 198846

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    acaaaacataaaggagaacttgaa 89
             |||||||||||||||||| |||||
Sbjct: 21537 acaaaacataaaggagaatttgaa 21514

to top

>gb|AC016525.11| Homo sapiens chromosome 15 clone RP11-358M11 map 15q21.3, complete
              sequence
          Length = 256019

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 381    atttttcttggggatcaatgcgctctcg 408
              ||||||||||||| |||||| |||||||
Sbjct: 244416 atttttcttggggttcaatgagctctcg 244443

to top

>gb|AC104340.10| Mus musculus chromosome 7, clone RP24-495M13, complete sequence
          Length = 170605

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    caacaaaagaagcttaaact 30
             ||||||||||||||||||||
Sbjct: 19666 caacaaaagaagcttaaact 19647

to top

>ref|NM_073643.2| Caenorhabditis elegans C27A7.1 (C27A7.1) mRNA, complete cds
          Length = 2639

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 tacaattacgacaattacaa 245
           ||||||||||||||||||||
Sbjct: 246 tacaattacgacaattacaa 227

to top

>gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515H24 map 15q21.3, complete
             sequence
          Length = 191330

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 381   atttttcttggggatcaatgcgctctcg 408
             ||||||||||||| |||||| |||||||
Sbjct: 12940 atttttcttggggttcaatgagctctcg 12967

to top

>emb|BX510917.5| Zebrafish DNA sequence from clone CH211-250O15 in linkage group 5,
              complete sequence
          Length = 140129

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     tcctatattgacaaaacata 75
              ||||||||||||||||||||
Sbjct: 105929 tcctatattgacaaaacata 105948

to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 328      tgcagaattcttttcttcggtcaa 351
                |||||| |||||||||||||||||
Sbjct: 18897741 tgcagacttcttttcttcggtcaa 18897764

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 165      tgatactgatagaaaagaatcatg 188
                |||||||| |||||||||||||||
Sbjct: 25734106 tgatactgctagaaaagaatcatg 25734129

to top

>gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BAC F19C17 genomic sequence, complete
             sequence
          Length = 117055

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 438   catctccattttctgattcaaccctaga 465
             |||||||||||||||| | |||||||||
Sbjct: 46231 catctccattttctgagttaaccctaga 46258

to top

>dbj|AB017068.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJG14
          Length = 86121

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 438   catctccattttctgattcaaccctaga 465
             |||||||||||||||| | |||||||||
Sbjct: 24106 catctccattttctgagttaaccctaga 24079

to top

>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence
          Length = 125630

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tgacaaaacataaaggagaa 83
              ||||||||||||||||||||
Sbjct: 123774 tgacaaaacataaaggagaa 123793

to top

>dbj|AK058656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F08, full
           insert sequence
          Length = 1119

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 328 tgcagaattcttttcttcggtcaa 351
           |||||| |||||||||||||||||
Sbjct: 687 tgcagacttcttttcttcggtcaa 664

to top

>emb|Z81041.1|CEC27A7 Caenorhabditis elegans Cosmid C27A7, complete sequence
          Length = 38514

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  tacaattacgacaattacaa 245
            ||||||||||||||||||||
Sbjct: 6931 tacaattacgacaattacaa 6912

to top

>gb|AF147262.1|F28D6 Arabidopsis thaliana BAC F28D6
          Length = 112629

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 438   catctccattttctgattcaaccctaga 465
             |||||||||||||||| | |||||||||
Sbjct: 17959 catctccattttctgagttaaccctaga 17986

to top

>gb|AY756225.1| Verticillium dahliae var. longisporum clone 159 5S nontranscribed
           spacer, genomic sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 35  caacatttctcacacatgtactcc 58
           |||||||||||||||||| |||||
Sbjct: 101 caacatttctcacacatgaactcc 124

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 328      tgcagaattcttttcttcggtcaa 351
                |||||| |||||||||||||||||
Sbjct: 18908995 tgcagacttcttttcttcggtcaa 18909018

to top

>gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, complete sequence
          Length = 180698

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    ctccagcctctaaagatttt 385
              ||||||||||||||||||||
Sbjct: 104313 ctccagcctctaaagatttt 104294

to top

>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete
             sequence
          Length = 165747

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   agatggtggctgtggaggtg 518
             ||||||||||||||||||||
Sbjct: 57680 agatggtggctgtggaggtg 57661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,350,759
Number of Sequences: 3902068
Number of extensions: 6350759
Number of successful extensions: 176862
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176502
Number of HSP's gapped (non-prelim): 350
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result