ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465979.1| Oryza sativa (japonica cultivar-group), mRNA 200 4e-48
2dbj|AK103390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
4dbj|AP006850.2| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
5dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
6gb|AY109525.1| Zea mays CL5474_1 mRNA sequence 119 1e-23
7gb|AY112446.1| Zea mays CL5474_-4 mRNA sequence 78 4e-11
8gb|AY645947.1| Zea mays transposon helitron, complete sequence 76 2e-10
9gb|AY110963.1| Zea mays CL5474_2 mRNA sequence 66 2e-07
10ref|NM_113578.3| Arabidopsis thaliana unknown protein AT3G26670 ... 48 0.038
11ref|NM_202638.1| Arabidopsis thaliana unknown protein AT3G26670 ... 48 0.038
12ref|NM_180303.1| Arabidopsis thaliana unknown protein AT3G26670 ... 48 0.038
13gb|AY093129.1| Arabidopsis thaliana unknown protein (At3g26670) ... 48 0.038
14gb|BT006587.1| Arabidopsis thaliana At3g26670 mRNA, complete cds 48 0.038
15emb|BX824813.1|CNS0A6OZ Arabidopsis thaliana Full-length cDNA Co... 48 0.038
16gb|AC157741.2| Xenopus tropicalis clone ISB1-51N1, complete sequ... 42 2.4
17emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o... 42 2.4
18gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis tha... 42 2.4
19gb|AC166493.6| Mus musculus chromosome 1, clone RP24-317E14, com... 40 9.4
20gb|AC166107.4| Mus musculus BAC clone RP23-205A7 from chromosome... 40 9.4
21gb|AC102652.9| Mus musculus chromosome 6, clone RP23-20L3, compl... 40 9.4
22gb|AC127577.4| Mus musculus BAC clone RP24-243K23 from chromosom... 40 9.4
23gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome... 40 9.4
24gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome ... 40 9.4
25gb|AE004366.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.4
26gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, comp... 40 9.4
27emb|AL109983.2|HSJ718P11 Human DNA sequence from clone RP4-718P1... 40 9.4
28emb|BX901889.4| Zebrafish DNA sequence from clone CH211-96I7 in ... 40 9.4
29dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 9.4
30dbj|AK034646.1| Mus musculus 12 days embryo embryonic body betwe... 40 9.4
31dbj|AK076571.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.4
32gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cance... 40 9.4
33gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome... 40 9.4
34gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, com... 40 9.4
35dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
36dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
37gb|AC119176.10| Mus musculus chromosome 1, clone RP24-359F24, co... 40 9.4
38gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 9.4
39emb|AL672198.4| Zebrafish DNA sequence from clone BUSM1-251F2, c... 40 9.4
40emb|AL591517.8| Zebrafish DNA sequence from clone XX-204C9, comp... 40 9.4 
>ref|XM_465979.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1892

 Score =  200 bits (101), Expect = 4e-48
 Identities = 152/169 (89%)
 Strand = Plus / Minus

                                                                        
Query: 248  tgtactttaatcggtcagttcgaattcctctaaaccctgttgttctcgaggaaaccattg 307
            |||||||| ||||||| |||   |||||||| |||||||||||||  ||||| ||||| |
Sbjct: 1569 tgtactttgatcggtcggttgcgattcctctgaaccctgttgttcgtgaggagaccatcg 1510

                                                                        
Query: 308  gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
            |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 gcatcgcaagcaccgatgaagcgctgatggtctcctccccaaggccaagtgacatggagc 1450

                                                             
Query: 368  aagccgactttgccctcgacaatatgcgttttgctttcactcttactga 416
            |||||||||||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 1449 aagccgactttgccttggacagtatgcgttttgcttttacttttactga 1401



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 589  atgcctatgaagacaaatgtcatgcccaacacgaacattattatcctgagcgtatcgaac 648
            |||||||| |||||| ||||||||||||| || ||||| | |||||| || ||||| || 
Sbjct: 1270 atgcctataaagacagatgtcatgcccaatacaaacatcactatcctcagggtatcaaat 1211

                                                 
Query: 649  acttgatactcttgaaagtaaacaaatcctgtacaaa 685
            |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1210 acttgatattcttgaaagtacacaaatcctgtgcaaa 1174



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 82   aactatacactgatgttacagctaa 106
            ||||||||||| |||||||||||||
Sbjct: 1747 aactatacactcatgttacagctaa 1723
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>dbj|AK103390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127K21, full
            insert sequence
          Length = 1892

 Score =  200 bits (101), Expect = 4e-48
 Identities = 152/169 (89%)
 Strand = Plus / Minus

                                                                        
Query: 248  tgtactttaatcggtcagttcgaattcctctaaaccctgttgttctcgaggaaaccattg 307
            |||||||| ||||||| |||   |||||||| |||||||||||||  ||||| ||||| |
Sbjct: 1569 tgtactttgatcggtcggttgcgattcctctgaaccctgttgttcgtgaggagaccatcg 1510

                                                                        
Query: 308  gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
            |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 gcatcgcaagcaccgatgaagcgctgatggtctcctccccaaggccaagtgacatggagc 1450

                                                             
Query: 368  aagccgactttgccctcgacaatatgcgttttgctttcactcttactga 416
            |||||||||||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 1449 aagccgactttgccttggacagtatgcgttttgcttttacttttactga 1401



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 589  atgcctatgaagacaaatgtcatgcccaacacgaacattattatcctgagcgtatcgaac 648
            |||||||| |||||| ||||||||||||| || ||||| | |||||| || ||||| || 
Sbjct: 1270 atgcctataaagacagatgtcatgcccaatacaaacatcactatcctcagggtatcaaat 1211

                                                 
Query: 649  acttgatactcttgaaagtaaacaaatcctgtacaaa 685
            |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1210 acttgatattcttgaaagtacacaaatcctgtgcaaa 1174



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 82   aactatacactgatgttacagctaa 106
            ||||||||||| |||||||||||||
Sbjct: 1747 aactatacactcatgttacagctaa 1723
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  161 bits (81), Expect = 4e-36
 Identities = 117/129 (90%)
 Strand = Plus / Plus

                                                                            
Query: 248      tgtactttaatcggtcagttcgaattcctctaaaccctgttgttctcgaggaaaccattg 307
                |||||||| ||||||| |||   |||||||| |||||||||||||  ||||| ||||| |
Sbjct: 18846743 tgtactttgatcggtcggttgcgattcctctgaaccctgttgttcgtgaggagaccatcg 18846802

                                                                            
Query: 308      gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
                |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18846803 gcatcgcaagcaccgatgaagcgctgatggtctcctccccaaggccaagtgacatggagc 18846862

                         
Query: 368      aagccgact 376
                |||||||||
Sbjct: 18846863 aagccgact 18846871



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 648      cacttgatactcttgaaagtaaacaaatcctgtacaaa 685
                ||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 18847450 cacttgatattcttgaaagtacacaaatcctgtgcaaa 18847487



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 589      atgcctatgaagacaaatgtcatgcccaacacgaacattattatcctgagcgtatc 644
                |||||||| |||||| ||||||||||||| || ||||| | |||||| || |||||
Sbjct: 18847304 atgcctataaagacagatgtcatgcccaatacaaacatcactatcctcagggtatc 18847359



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 375      ctttgccctcgacaatatgcgttttgctttcactcttactga 416
                ||||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 18846950 ctttgccttggacagtatgcgttttgcttttacttttactga 18846991



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 82       aactatacactgatgttacagctaa 106
                ||||||||||| |||||||||||||
Sbjct: 18846565 aactatacactcatgttacagctaa 18846589



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 523      tcctttttggagttagagtc 542
                ||||||||||||||||||||
Sbjct: 22389200 tcctttttggagttagagtc 22389181
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>dbj|AP006850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             fosmid clone:OSJNOa257A21
          Length = 34833

 Score =  161 bits (81), Expect = 4e-36
 Identities = 117/129 (90%)
 Strand = Plus / Plus

                                                                         
Query: 248   tgtactttaatcggtcagttcgaattcctctaaaccctgttgttctcgaggaaaccattg 307
             |||||||| ||||||| |||   |||||||| |||||||||||||  ||||| ||||| |
Sbjct: 30985 tgtactttgatcggtcggttgcgattcctctgaaccctgttgttcgtgaggagaccatcg 31044

                                                                         
Query: 308   gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
             |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31045 gcatcgcaagcaccgatgaagcgctgatggtctcctccccaaggccaagtgacatggagc 31104

                      
Query: 368   aagccgact 376
             |||||||||
Sbjct: 31105 aagccgact 31113



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 648   cacttgatactcttgaaagtaaacaaatcctgtacaaa 685
             ||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 31692 cacttgatattcttgaaagtacacaaatcctgtgcaaa 31729



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 589   atgcctatgaagacaaatgtcatgcccaacacgaacattattatcctgagcgtatc 644
             |||||||| |||||| ||||||||||||| || ||||| | |||||| || |||||
Sbjct: 31546 atgcctataaagacagatgtcatgcccaatacaaacatcactatcctcagggtatc 31601



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 375   ctttgccctcgacaatatgcgttttgctttcactcttactga 416
             ||||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 31192 ctttgccttggacagtatgcgttttgcttttacttttactga 31233



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 82    aactatacactgatgttacagctaa 106
             ||||||||||| |||||||||||||
Sbjct: 30807 aactatacactcatgttacagctaa 30831
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>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461D06
          Length = 112895

 Score =  161 bits (81), Expect = 4e-36
 Identities = 117/129 (90%)
 Strand = Plus / Plus

                                                                         
Query: 248   tgtactttaatcggtcagttcgaattcctctaaaccctgttgttctcgaggaaaccattg 307
             |||||||| ||||||| |||   |||||||| |||||||||||||  ||||| ||||| |
Sbjct: 10276 tgtactttgatcggtcggttgcgattcctctgaaccctgttgttcgtgaggagaccatcg 10335

                                                                         
Query: 308   gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
             |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10336 gcatcgcaagcaccgatgaagcgctgatggtctcctccccaaggccaagtgacatggagc 10395

                      
Query: 368   aagccgact 376
             |||||||||
Sbjct: 10396 aagccgact 10404



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 648   cacttgatactcttgaaagtaaacaaatcctgtacaaa 685
             ||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 10983 cacttgatattcttgaaagtacacaaatcctgtgcaaa 11020



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 589   atgcctatgaagacaaatgtcatgcccaacacgaacattattatcctgagcgtatc 644
             |||||||| |||||| ||||||||||||| || ||||| | |||||| || |||||
Sbjct: 10837 atgcctataaagacagatgtcatgcccaatacaaacatcactatcctcagggtatc 10892



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 375   ctttgccctcgacaatatgcgttttgctttcactcttactga 416
             ||||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 10483 ctttgccttggacagtatgcgttttgcttttacttttactga 10524



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 82    aactatacactgatgttacagctaa 106
             ||||||||||| |||||||||||||
Sbjct: 10098 aactatacactcatgttacagctaa 10122
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>gb|AY109525.1| Zea mays CL5474_1 mRNA sequence
          Length = 1000

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                       
Query: 568 tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
           ||||| |||||||||| ||| || || |  |||||||||||||||||||| || | ||| 
Sbjct: 594 tcatcgggtgctagcaaggagatcccaacaaagacaaatgtcatgcccaatacaaccata 653

                                                                   
Query: 628 attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
           ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 654 attatcctgagcgtatcaaatacttgatattcttgaaagtaaacaaatcctgtaca 709



 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Plus

                                                                       
Query: 270 aattcctctaaaccctgttgttctcgaggaaaccattggcattgcaagcaccgaagaagc 329
           ||||||||| || || |||||||| || || ||||| ||||| |||||||| || |||||
Sbjct: 326 aattcctctgaagccggttgttcttgatgagaccataggcatggcaagcacggacgaagc 385

                                                                       
Query: 330 gctgatggtctcctccccaaggccaagtgacatggagcaagccgactttgccctcgacaa 389
           ||| || || ||||||||||||||||| ||||||||||| || ||||||||| || ||| 
Sbjct: 386 gcttattgtgtcctccccaaggccaagggacatggagcatgcagactttgccttcaacag 445

                          
Query: 390 tatgcgttttgcttt 404
           ||  |||||||||||
Sbjct: 446 tacacgttttgcttt 460
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>gb|AY112446.1| Zea mays CL5474_-4 mRNA sequence
          Length = 594

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 271 attcctctaaaccctgttgttctcgaggaaaccattggcattgcaagcaccgaagaagcg 330
           |||||||| || || | |||||| || || ||||| ||||| ||||||||||| ||||||
Sbjct: 494 attcctctgaagccggntgttcttgatgagaccataggcatggcaagcaccgatgaagcg 553

                                                 
Query: 331 ctgatggtctcctccccaaggccaagtgacatggagca 368
           || |||||   ||||||||||||||| |||||||||||
Sbjct: 554 cttatggtgctctccccaaggccaagggacatggagca 591
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>gb|AY645947.1| Zea mays transposon helitron, complete sequence
          Length = 6525

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                        
Query: 271  attcctctaaaccctgttgttctcgaggaaaccattggcattgcaagcaccgaagaagcg 330
            |||||||| || || |||||||| || || |||||  |||| ||||||||||| ||||||
Sbjct: 5893 attcctctgaagccggttgttcttgacgagaccataagcatggcaagcaccgatgaagcg 5834

                                                  
Query: 331  ctgatggtctcctccccaaggccaagtgacatggagca 368
            || |||||   ||||||||||||||| |||||||||||
Sbjct: 5833 cttatggtgctctccccaaggccaagggacatggagca 5796



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 649  acttgatactcttgaaagtaaacaaatcctgtacaaa 685
            |||||||| ||||||||||||||||||||||||||||
Sbjct: 5212 acttgatattcttgaaagtaaacaaatcctgtacaaa 5176



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Minus

                                                           
Query: 598  aagacaaatgtcatgcccaacacgaacattattatcctgagcgtatc 644
            ||||||||||||||||| |||||  |||| |||||||||||||||||
Sbjct: 5348 aagacaaatgtcatgcctaacac--acataattatcctgagcgtatc 5304
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>gb|AY110963.1| Zea mays CL5474_2 mRNA sequence
          Length = 707

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 308 gcattgcaagcaccgaagaagcgctgatggtctcctccccaaggccaagtgacatggagc 367
           |||| ||||||||||| |||||||| |||||   ||||||||||||||| ||||||||||
Sbjct: 427 gcatggcaagcaccgatgaagcgcttatggtgctctccccaaggccaagggacatggagc 486

            
Query: 368 a 368
           |
Sbjct: 487 a 487



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/46 (91%), Gaps = 2/46 (4%)
 Strand = Plus / Plus

                                                         
Query: 598 aagacaaatgtcatgcccaacacgaacattattatcctgagcgtat 643
           ||||||||||||||||| |||||  |||| ||||||||||||||||
Sbjct: 645 aagacaaatgtcatgcctaacac--acataattatcctgagcgtat 688
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>ref|NM_113578.3| Arabidopsis thaliana unknown protein AT3G26670 transcript variant
            AT3G26670.1 mRNA, complete cds
          Length = 1794

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                        
Query: 568  tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
            |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 1147 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 1088

                                                                    
Query: 628  attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
             || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 1087 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 1032
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>ref|NM_202638.1| Arabidopsis thaliana unknown protein AT3G26670 transcript variant
            AT3G26670.3 mRNA, complete cds
          Length = 1851

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                        
Query: 568  tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
            |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 1204 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 1145

                                                                    
Query: 628  attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
             || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 1144 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 1089
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>ref|NM_180303.1| Arabidopsis thaliana unknown protein AT3G26670 transcript variant
            AT3G26670.2 mRNA, complete cds
          Length = 1953

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                        
Query: 568  tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
            |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 1306 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 1247

                                                                    
Query: 628  attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
             || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 1246 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 1191
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>gb|AY093129.1| Arabidopsis thaliana unknown protein (At3g26670) mRNA, complete cds
          Length = 1791

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                        
Query: 568  tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
            |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 1147 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 1088

                                                                    
Query: 628  attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
             || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 1087 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 1032
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>gb|BT006587.1| Arabidopsis thaliana At3g26670 mRNA, complete cds
          Length = 1326

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                       
Query: 568 tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
           |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 929 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 870

                                                                   
Query: 628 attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
            || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 869 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 814
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>emb|BX824813.1|CNS0A6OZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH74ZG07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1788

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 93/116 (80%)
 Strand = Plus / Minus

                                                                        
Query: 568  tcatcaggtgctagcagggatatgcctatgaagacaaatgtcatgcccaacacgaacatt 627
            |||||||||||||| |  || ||||||||||| ||| |  |||| || || | |||||||
Sbjct: 1204 tcatcaggtgctagtaaagaaatgcctatgaatacacacatcattcctaatatgaacatt 1145

                                                                    
Query: 628  attatcctgagcgtatcgaacacttgatactcttgaaagtaaacaaatcctgtaca 683
             || | || |||| |||||| || ||| |||||||||||||||   ||||||||||
Sbjct: 1144 gttgttcttagcgcatcgaaaacctgaaactcttgaaagtaaatgcatcctgtaca 1089
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>gb|AC157741.2| Xenopus tropicalis clone ISB1-51N1, complete sequence
          Length = 58027

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 233   tggagcgcaggggggtgtactttaa 257
             ||||||||||||||||||| |||||
Sbjct: 11911 tggagcgcaggggggtgtattttaa 11887
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>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
             sequence
          Length = 198570

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 272   ttcctctaaaccctgttgttc 292
             |||||||||||||||||||||
Sbjct: 81497 ttcctctaaaccctgttgttc 81477
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>gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 74316

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 459  cggcaactttcttggcctgcaattt 483
            |||||||||| ||||||||||||||
Sbjct: 5011 cggcaacttttttggcctgcaattt 5035
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>gb|AC166493.6| Mus musculus chromosome 1, clone RP24-317E14, complete sequence
          Length = 178538

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tgcaatttcctggtacatgt 495
             ||||||||||||||||||||
Sbjct: 56245 tgcaatttcctggtacatgt 56226
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>gb|AC166107.4| Mus musculus BAC clone RP23-205A7 from chromosome 6, complete sequence
          Length = 177843

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 585    ggatatgcctatgaagacaa 604
              ||||||||||||||||||||
Sbjct: 173407 ggatatgcctatgaagacaa 173426
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>gb|AC102652.9| Mus musculus chromosome 6, clone RP23-20L3, complete sequence
          Length = 229752

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    gagaatgttacaaggggaaa 75
             ||||||||||||||||||||
Sbjct: 23832 gagaatgttacaaggggaaa 23851
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>gb|AC127577.4| Mus musculus BAC clone RP24-243K23 from chromosome 6, complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aatagcaatataaaagaata 178
             ||||||||||||||||||||
Sbjct: 22082 aatagcaatataaaagaata 22101
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>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence
          Length = 191814

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     tggagaatgttacaagggga 73
              ||||||||||||||||||||
Sbjct: 139411 tggagaatgttacaagggga 139392
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>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence
          Length = 221390

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    aatagcaatataaaagaata 178
              ||||||||||||||||||||
Sbjct: 202303 aatagcaatataaaagaata 202322
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>gb|AE004366.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 23
            of 93 of the complete chromosome
          Length = 10307

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   tacatcatgggtatggagaa 60
            ||||||||||||||||||||
Sbjct: 2868 tacatcatgggtatggagaa 2849
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>gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, complete sequence
          Length = 206016

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 585    ggatatgcctatgaagacaa 604
              ||||||||||||||||||||
Sbjct: 149740 ggatatgcctatgaagacaa 149721
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>emb|AL109983.2|HSJ718P11 Human DNA sequence from clone RP4-718P11 on chromosome 20p12.1-12.3
             Contains part of the SPTLC2L gene for serine
             palmitoyltransferase long chain base subunit 2-like
             (aminotransferase 2), complete sequence
          Length = 104913

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   caattgctttgggaagtacaaaca 151
             ||||||||||||| ||||||||||
Sbjct: 99427 caattgctttggggagtacaaaca 99450
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>emb|BX901889.4| Zebrafish DNA sequence from clone CH211-96I7 in linkage group 2, complete
              sequence
          Length = 172284

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    agctactttattttcatcag 574
              ||||||||||||||||||||
Sbjct: 147631 agctactttattttcatcag 147612
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     ccgaagaagcgctgatggtc 339
               ||||||||||||||||||||
Sbjct: 1960266 ccgaagaagcgctgatggtc 1960247
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>dbj|AK034646.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430018G01 product:unclassifiable, full insert
            sequence
          Length = 4096

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   gagaatgttacaaggggaaa 75
            ||||||||||||||||||||
Sbjct: 3913 gagaatgttacaaggggaaa 3894
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>dbj|AK076571.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921515N08 product:unclassifiable, full
           insert sequence
          Length = 3604

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gagaatgttacaaggggaaa 75
           ||||||||||||||||||||
Sbjct: 476 gagaatgttacaaggggaaa 457
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>gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cancer Institute
           (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 202028

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gagaatgttacaaggggaaa 75
           ||||||||||||||||||||
Sbjct: 231 gagaatgttacaaggggaaa 212
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>gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome 3, complete sequence
          Length = 203476

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    tggagaatgttacaagggga 73
             ||||||||||||||||||||
Sbjct: 45862 tggagaatgttacaagggga 45843
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>gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, complete sequence
          Length = 235968

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    atcatgggtatggagaatgt 63
             ||||||||||||||||||||
Sbjct: 78096 atcatgggtatggagaatgt 78077
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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1267B06
          Length = 156989

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    tcctttttggagttagagtc 542
              ||||||||||||||||||||
Sbjct: 147844 tcctttttggagttagagtc 147825
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>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_A05
          Length = 113326

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   tcctttttggagttagagtc 542
             ||||||||||||||||||||
Sbjct: 45419 tcctttttggagttagagtc 45400
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>gb|AC119176.10| Mus musculus chromosome 1, clone RP24-359F24, complete sequence
          Length = 208009

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    tgcaatttcctggtacatgt 495
              ||||||||||||||||||||
Sbjct: 205448 tgcaatttcctggtacatgt 205467
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     ccgaagaagcgctgatggtc 339
               ||||||||||||||||||||
Sbjct: 1982315 ccgaagaagcgctgatggtc 1982296
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>emb|AL672198.4| Zebrafish DNA sequence from clone BUSM1-251F2, complete sequence
          Length = 24979

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   agctactttattttcatcag 574
             ||||||||||||||||||||
Sbjct: 15557 agctactttattttcatcag 15576
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>emb|AL591517.8| Zebrafish DNA sequence from clone XX-204C9, complete sequence
          Length = 110834

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    agctactttattttcatcag 574
              ||||||||||||||||||||
Sbjct: 109678 agctactttattttcatcag 109659


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,047,213
Number of Sequences: 3902068
Number of extensions: 6047213
Number of successful extensions: 107416
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107226
Number of HSP's gapped (non-prelim): 188
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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