ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29m10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 3e-80
2dbj|AK121431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 299 6e-78
3gb|AF007794.1|AF007794 Zea mays retinoblastoma-related protein 2... 242 1e-60
4emb|X98923.1|ZMRB1 Z.mays mRNA for Rb1 protein 204 3e-49
5gb|AF250050.1| Zea mays retinoblastoma related protein RBR1 (rbr... 204 3e-49
6gb|AF007795.1|AF007795 Zea mays retinoblastoma-related protein 2... 204 3e-49
7gb|AF007793.1|AF007793 Zea mays retinoblastoma-related protein 1... 204 3e-49
8gb|BT016548.1| Zea mays clone Contig381 mRNA sequence 196 7e-47
9gb|U52099.2|ZMU52099 Zea mays retinoblastoma-like protein (ZmRB)... 196 7e-47
10gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome... 123 8e-25
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 123 8e-25
13gb|AY109777.1| Zea mays CL1187_-3 mRNA sequence 117 5e-23
14emb|AJ279062.2|ZMA279062 Zea mays rbr2 gene for retinoblastoma-r... 113 8e-22
15gb|AY109345.1| Zea mays CL1187_1 mRNA sequence 109 1e-20
16gb|AY117036.1| Cocos nucifera retinoblastoma-like protein (Rb1) ... 100 1e-17
17dbj|AB015221.1| Nicotiana tabacum NtRb1 mRNA, complete cds 48 0.038
18gb|AY699399.1| Nicotiana benthamiana retinoblastoma protein mRNA... 48 0.038
19gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC... 42 2.3
20gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome... 42 2.3
21gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's ... 42 2.3
22emb|AL160007.10| Human DNA sequence from clone RP4-798P15 on chr... 42 2.3
23emb|AL139156.11| Human DNA sequence from clone RP4-800M22 on chr... 42 2.3
24gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom... 42 2.3
25gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, comp... 42 2.3
26gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequ... 42 2.3
27gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, comp... 42 2.3
28gb|AC105754.3| Homo sapiens chromosome 1 clone RP4-814E15, compl... 42 2.3
29gb|AF230739.1|AF230739 Euphorbia esula retinoblastoma-like prote... 42 2.3
30emb|BX469932.7| Mouse DNA sequence from clone RP23-391L6 on chro... 42 2.3
31gb|AY832292.1| Platanus occidentalis ribosomal protein S4 (rps4)... 42 2.3
32gb|AY832286.1| Calycanthus floridus ribosomal protein S4 (rps4) ... 42 2.3
33dbj|AB071771.1| Capsicum annuum rps4 gene for ribosomal protein ... 42 2.3
34gb|AC151748.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 9.2
35gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, c... 40 9.2
36emb|CR352310.15| Zebrafish DNA sequence from clone CH211-254E10 ... 40 9.2
37ref|XM_647750.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 9.2
38emb|AL358975.8| Human DNA sequence from clone RP11-375O18 on chr... 40 9.2
39emb|X63603.1|NTACTI N.tabacum gene for actin 40 9.2
40emb|AL591982.1| Listeria monocytogenes strain EGD, complete geno... 40 9.2
41gb|AY289003.1|AY289003S1 Danio rerio signal transducer and activ... 40 9.2
42gb|AC160537.6| Mus musculus chromosome 8, clone RP24-95H19, comp... 40 9.2
43emb|CR354422.7| Zebrafish DNA sequence from clone CH211-129O4 in... 40 9.2
44emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chr... 40 9.2
45dbj|AK056925.1| Homo sapiens cDNA FLJ32363 fis, clone PUAEN1000081 40 9.2
46gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, com... 40 9.2
47gb|AC114310.2| Homo sapiens chromosome 5 clone RP11-285K13, comp... 40 9.2
48gb|AC114956.2| Homo sapiens chromosome 5 clone RP11-159F24, comp... 40 9.2
49gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, comple... 40 9.2
50gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, com... 40 9.2
51gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, r... 40 9.2
52gb|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A1... 40 9.2
53ref|XM_230634.3| PREDICTED: Rattus norvegicus kinesin family mem... 40 9.2
54ref|NM_198566.1| Homo sapiens FLJ32363 protein (FLJ32363), mRNA 40 9.2
55dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 9.2
56gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides ret... 40 9.2
57emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 i... 40 9.2
58gb|BC036867.1| Homo sapiens FLJ32363 protein, mRNA (cDNA clone M... 40 9.2
59emb|BX088722.8| Zebrafish DNA sequence from clone CH211-253P18 i... 40 9.2
60gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49... 40 9.2
61gb|BC087622.1| Xenopus laevis hypothetical LOC496107, mRNA (cDNA... 40 9.2
62dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.2
63gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, comple... 40 9.2
64emb|X83768.1|HSNFKB2PR H.sapiens NFKB2/LYT-10 gene promoter region 40 9.2 
>dbj|AK064987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D03, full
            insert sequence
          Length = 3332

 Score =  307 bits (155), Expect = 3e-80
 Identities = 297/343 (86%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 361
            |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 3022 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 2963

                                                                        
Query: 362  tcgctaaccatgtcaaagtttattcgagtgttgattctcctggtggtgtaatttagacaa 421
            || || |||||||| ||||||||||| ||||||||||||||||| | ||||||||| |  
Sbjct: 2962 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggtagggtaatttaggcgg 2903

                                                                        
Query: 422  ttatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgata 481
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| 
Sbjct: 2902 ctatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatg 2843

                                                                        
Query: 482  caagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcaga 541
            || || || |||||||  |||||||||||||||||||||||| |||| ||||| || |||
Sbjct: 2842 cacgcgtagaaactccgtgaacttggtgaaagcaatgcatccatcttagtttgtcgtaga 2783

                                                                        
Query: 542  ggagaaatataaacattatgggaagatgagactttctttggggacatatctggtagattt 601
            ||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 2782 ggagagacatacacattatgagaagatgagactttcttcggggacatatctggtaaattt 2723

                                                       
Query: 602  gagaagggagatgacctttggtgatccaggaatttggctatta 644
            ||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 2722 gagaaaggagatga-cttgggtgatccaggaatttggctatta 2681



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 173  ttcacccacttattcagaagaac 195
            |||||||||||||||||||||||
Sbjct: 3151 ttcacccacttattcagaagaac 3129
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>dbj|AK121431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138G19, full
            insert sequence
          Length = 3384

 Score =  299 bits (151), Expect = 6e-78
 Identities = 296/343 (86%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 361
            |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 3063 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 3004

                                                                        
Query: 362  tcgctaaccatgtcaaagtttattcgagtgttgattctcctggtggtgtaatttagacaa 421
            || || |||||||| ||||||||||| |||| |||||||||||| | ||||||||| |  
Sbjct: 3003 tcactcaccatgtcgaagtttattcgtgtgtcgattctcctggtagggtaatttaggcgg 2944

                                                                        
Query: 422  ttatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgata 481
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| 
Sbjct: 2943 ctatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatg 2884

                                                                        
Query: 482  caagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcaga 541
            || || || |||||||  |||||||||||||||||||||||| |||| ||||| || |||
Sbjct: 2883 cacgcgtagaaactccgtgaacttggtgaaagcaatgcatccatcttagtttgtcgtaga 2824

                                                                        
Query: 542  ggagaaatataaacattatgggaagatgagactttctttggggacatatctggtagattt 601
            ||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 2823 ggagagacatacacattatgagaagatgagactttcttcggggacatatctggtaaattt 2764

                                                       
Query: 602  gagaagggagatgacctttggtgatccaggaatttggctatta 644
            ||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 2763 gagaaaggagatga-cttgggtgatccaggaatttggctatta 2722



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 173  ttcacccacttattcagaagaac 195
            |||||||||||||||||||||||
Sbjct: 3192 ttcacccacttattcagaagaac 3170
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>gb|AF007794.1|AF007794 Zea mays retinoblastoma-related protein 2a (RRB2a) mRNA, partial cds
          Length = 2945

 Score =  242 bits (122), Expect = 1e-60
 Identities = 282/334 (84%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                        
Query: 324  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 383
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 1200 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 1141

                                                                        
Query: 384  ttcgagtgttgattctcctggtggtgtaatttagacaattatttatagcggccaaatctt 443
             |||| |||| | |||||      | |||||||| |   |||||||||| ||||||||||
Sbjct: 1140 atcgactgtttactctccgaccattataatttaggcggctatttatagcagccaaatctt 1081

                                                                        
Query: 444  cagatgagctctgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaac 503
             ||||| |||||||||||||||||||| |||||| || || |||||||||||||| ||||
Sbjct: 1080 tagatgggctctgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaac 1021

                                                                        
Query: 504  ttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaacattatggg 563
            ||||||| |||| |  |||| |||||||||| |||| |||||| | ||| |||||||| |
Sbjct: 1020 ttggtgacagcagtaaatccatcttggtttgccgcaaaggagacacatatacattatgag 961

                                                                        
Query: 564  aagatgagactttctttggggacatatctggtagatttgagaagggagatgacctttggt 623
            ||| ||| ||||||||||||||||||||||||| ||||| ||| |||||| | ||| |||
Sbjct: 960  aagctgaaactttctttggggacatatctggtaaatttgggaaaggagat-agcttcggt 902

                                              
Query: 624  gatccaggaatttggctattatgattcttcttgt 657
            |||||||||| ||||| | ||  |||||||||||
Sbjct: 901  gatccaggaacttggccactagcattcttcttgt 868



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||| | ||| |||||||| | |||||||||| || || || |||  ||||||||||
Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330

                     
Query: 186  tcagaagaa 194
            |||||||||
Sbjct: 1329 tcagaagaa 1321
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>emb|X98923.1|ZMRB1 Z.mays mRNA for Rb1 protein
          Length = 3747

 Score =  204 bits (103), Expect = 3e-49
 Identities = 278/335 (82%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2006 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 1947

                                                                        
Query: 395  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 1946 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 1887

                                                                        
Query: 455  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 514
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 1886 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 1827

                                                                        
Query: 515  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 574
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 1826 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 1767

                                                                        
Query: 575  ttctttggggacatatctggtagatttgagaagggagatgacctttggtgatccaggaat 634
            ||||| |||||||||||||||| ||||| ||| |||||||  ||| ||||||||||||||
Sbjct: 1766 ttcttcggggacatatctggtaaatttgggaaaggagatg-gcttgggtgatccaggaat 1708

                                               
Query: 635  ttggctattatgattcttcttgttgtctggatgag 669
            ||||| | ||  |||||||||||  ||||||||||
Sbjct: 1707 ttggccactagcattcttcttgtcttctggatgag 1673



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 2213 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2154

                     
Query: 186  tcagaagaa 194
            |||||||||
Sbjct: 2153 tcagaagaa 2145
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>gb|AF250050.1| Zea mays retinoblastoma related protein RBR1 (rbr1) mRNA, complete
            cds
          Length = 2952

 Score =  204 bits (103), Expect = 3e-49
 Identities = 278/335 (82%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2644 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2585

                                                                        
Query: 395  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2584 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2525

                                                                        
Query: 455  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 514
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 2524 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 2465

                                                                        
Query: 515  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 574
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 2464 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 2405

                                                                        
Query: 575  ttctttggggacatatctggtagatttgagaagggagatgacctttggtgatccaggaat 634
            ||||| |||||||||||||||| ||||| ||| |||||||  ||| ||||||||||||||
Sbjct: 2404 ttcttcggggacatatctggtaaatttgggaaaggagatg-gcttgggtgatccaggaat 2346

                                               
Query: 635  ttggctattatgattcttcttgttgtctggatgag 669
            ||||| | ||  |||||||||||  ||||||||||
Sbjct: 2345 ttggccactagcattcttcttgtcttctggatgag 2311



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||||| ||| |||||||| | |||||||||| || |  |  |||| ||||||||||
Sbjct: 2851 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 2792

                     
Query: 186  tcagaagaa 194
            |||||||||
Sbjct: 2791 tcagaagaa 2783
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>gb|AF007795.1|AF007795 Zea mays retinoblastoma-related protein 2b (RRB2b) mRNA, partial cds
          Length = 2538

 Score =  204 bits (103), Expect = 3e-49
 Identities = 203/235 (86%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                        
Query: 423  tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 482
            |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||| || |
Sbjct: 1672 tatttatagcagccaaatctttagatgggctctgataagcatgggtgccttcaccaatgc 1613

                                                                        
Query: 483  aagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagag 542
            | |||||||||||||| ||||||||||| |||| |  |||| |||||||||| |||| ||
Sbjct: 1612 atgcataaaaactcctggaacttggtgacagcagtaaatccatcttggtttgccgcaaag 1553

                                                                        
Query: 543  gagaaatataaacattatgggaagatgagactttctttggggacatatctggtagatttg 602
            |||| | ||| |||||||| |||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 1552 gagacacatatacattatgagaagctgaaactttctttggggacatatctggtaaatttg 1493

                                                                   
Query: 603  agaagggagatgacctttggtgatccaggaatttggctattatgattcttcttgt 657
             ||| |||||| | ||| ||||||||||||| ||||| | ||  |||||||||||
Sbjct: 1492 ggaaaggagat-agcttcggtgatccaggaacttggccactagcattcttcttgt 1439
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>gb|AF007793.1|AF007793 Zea mays retinoblastoma-related protein 1 (RRB1) mRNA, complete cds
          Length = 4367

 Score =  204 bits (103), Expect = 3e-49
 Identities = 278/335 (82%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2624 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2565

                                                                        
Query: 395  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2564 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2505

                                                                        
Query: 455  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 514
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 2504 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 2445

                                                                        
Query: 515  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 574
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 2444 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 2385

                                                                        
Query: 575  ttctttggggacatatctggtagatttgagaagggagatgacctttggtgatccaggaat 634
            ||||| |||||||||||||||| ||||| ||| |||||||  ||| ||||||||||||||
Sbjct: 2384 ttcttcggggacatatctggtaaatttgggaaaggagatg-gcttgggtgatccaggaat 2326

                                               
Query: 635  ttggctattatgattcttcttgttgtctggatgag 669
            ||||| | ||  |||||||||||  ||||||||||
Sbjct: 2325 ttggccactagcattcttcttgtcttctggatgag 2291



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 2831 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2772

                     
Query: 186  tcagaagaa 194
            |||||||||
Sbjct: 2771 tcagaagaa 2763
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>gb|BT016548.1| Zea mays clone Contig381 mRNA sequence
          Length = 1088

 Score =  196 bits (99), Expect = 7e-47
 Identities = 277/335 (82%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 335 tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
           |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 525 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 466

                                                                       
Query: 395 attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
           | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 465 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 406

                                                                       
Query: 455 tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 514
           |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 405 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 346

                                                                       
Query: 515 aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 574
           | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 345 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 286

                                                                       
Query: 575 ttctttggggacatatctggtagatttgagaagggagatgacctttggtgatccaggaat 634
           ||||| |||||||||||||||| ||||| ||| |||||||   || ||||||||||||||
Sbjct: 285 ttcttcggggacatatctggtaaatttgggaaaggagatg-ggttgggtgatccaggaat 227

                                              
Query: 635 ttggctattatgattcttcttgttgtctggatgag 669
           ||||| | ||  |||||||||||  ||||||||||
Sbjct: 226 ttggccactagcattcttcttgtcttctggatgag 192



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 126 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
           ||||||||| ||| |||||||| | |||||||||| || |  |  |||| ||||||||||
Sbjct: 732 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 673

                    
Query: 186 tcagaagaa 194
           |||||||||
Sbjct: 672 tcagaagaa 664
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>gb|U52099.2|ZMU52099 Zea mays retinoblastoma-like protein (ZmRB) mRNA, partial cds
          Length = 1841

 Score =  196 bits (99), Expect = 7e-47
 Identities = 277/335 (82%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 1510 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 1451

                                                                        
Query: 395  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 1450 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 1391

                                                                        
Query: 455  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 514
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 1390 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 1331

                                                                        
Query: 515  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 574
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 1330 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 1271

                                                                        
Query: 575  ttctttggggacatatctggtagatttgagaagggagatgacctttggtgatccaggaat 634
            ||||| |||||||||||||||| ||||| ||| |||||||  ||| ||||||||||||||
Sbjct: 1270 ttcttcggggacatatctggtaaatttgggaaaggagatg-gcttgggtgatccaggaat 1212

                                               
Query: 635  ttggctattatgattcttcttgttgtctggatgag 669
            ||| | | ||  |||||||||||  ||||||||||
Sbjct: 1211 ttgcccactagcattcttcttgtcttctggatgag 1177



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 1718 actgctgcttctcactaacacatacatgtacagttaaatcgctctagttaatccacttat 1659

                
Query: 186  tcag 189
            ||||
Sbjct: 1658 tcag 1655
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>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0080I08, complete sequence
          Length = 197156

 Score =  123 bits (62), Expect = 8e-25
 Identities = 99/110 (90%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                         
Query: 530   gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 589
             ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 37706 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 37647

                                                               
Query: 590   tctggtagatttgagaagggagatgacctttggtgatccaggaatttggc 639
             ||||||| ||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 37646 tctggtaaatttgagaaaggagatga-cttgggtgatccaggaatttggc 37598



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                         
Query: 302   gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 361
             |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 38221 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 38162

                                                         
Query: 362   tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 405
             || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 38161 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 38118



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 423   tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 482
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 37983 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 37924

                                                      
Query: 483   aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 523
             | || || |||||||  ||||||||||||||||||||||||
Sbjct: 37923 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 37883



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 173   ttcacccacttattcagaagaac 195
             |||||||||||||||||||||||
Sbjct: 38350 ttcacccacttattcagaagaac 38328
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  123 bits (62), Expect = 8e-25
 Identities = 99/110 (90%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                            
Query: 530      gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 589
                ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 18772439 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 18772380

                                                                  
Query: 590      tctggtagatttgagaagggagatgacctttggtgatccaggaatttggc 639
                ||||||| ||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 18772379 tctggtaaatttgagaaaggagatga-cttgggtgatccaggaatttggc 18772331



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 302      gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 361
                |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 18772954 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 18772895

                                                            
Query: 362      tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 405
                || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18772894 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 18772851



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 423      tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 482
                |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 18772716 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 18772657

                                                         
Query: 483      aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 523
                | || || |||||||  ||||||||||||||||||||||||
Sbjct: 18772656 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 18772616



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 173      ttcacccacttattcagaagaac 195
                |||||||||||||||||||||||
Sbjct: 18773083 ttcacccacttattcagaagaac 18773061
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  123 bits (62), Expect = 8e-25
 Identities = 99/110 (90%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                            
Query: 530      gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 589
                ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 18932512 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 18932453

                                                                  
Query: 590      tctggtagatttgagaagggagatgacctttggtgatccaggaatttggc 639
                ||||||| ||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 18932452 tctggtaaatttgagaaaggagatga-cttgggtgatccaggaatttggc 18932404



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 302      gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 361
                |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 18933027 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 18932968

                                                            
Query: 362      tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 405
                || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18932967 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 18932924



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 423      tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 482
                |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 18932789 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 18932730

                                                         
Query: 483      aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 523
                | || || |||||||  ||||||||||||||||||||||||
Sbjct: 18932729 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 18932689



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 173      ttcacccacttattcagaagaac 195
                |||||||||||||||||||||||
Sbjct: 18933156 ttcacccacttattcagaagaac 18933134
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>gb|AY109777.1| Zea mays CL1187_-3 mRNA sequence
          Length = 2920

 Score =  117 bits (59), Expect = 5e-23
 Identities = 138/163 (84%), Gaps = 1/163 (0%)
 Strand = Plus / Minus

                                                                        
Query: 495  tcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaa 554
            |||| ||||||||||| |||| |  |||| |||||||||| |||| |||||| | ||| |
Sbjct: 1029 tcctggaacttggtgacagcagtaaatccatcttggtttgccgcaaaggagacacatata 970

                                                                        
Query: 555  cattatgggaagatgagactttctttggggacatatctggtagatttgagaagggagatg 614
            ||||||| |||| ||| ||||||||||||||||||||||||| ||||| ||| |||||| 
Sbjct: 969  cattatgagaagctgaaactttctttggggacatatctggtaaatttgggaaaggagat- 911

                                                       
Query: 615  acctttggtgatccaggaatttggctattatgattcttcttgt 657
            | ||| ||||||||||||| ||||| | ||  |||||||||||
Sbjct: 910  agcttcggtgatccaggaacttggccactagcattcttcttgt 868



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                        
Query: 324  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 383
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 1200 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 1141

                                                                        
Query: 384  ttcgagtgttgattctcctggtggtgtaatttagacaattatttatagcggccaaatctt 443
             |||| |||| | |||||      | |||||||| |   |||||||||| ||||||||||
Sbjct: 1140 atcgactgtttactctccgaccattataatttaggcggctatttatagcagccaaatctt 1081

                             
Query: 444  cagatgagctctgataa 460
             ||||| ||||||||||
Sbjct: 1080 tagatgggctctgataa 1064



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 126  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 185
            ||||||| | ||| |||||||| | |||||||||| || || || |||  ||||||||||
Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330

                     
Query: 186  tcagaagaa 194
            |||||||||
Sbjct: 1329 tcagaagaa 1321
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>emb|AJ279062.2|ZMA279062 Zea mays rbr2 gene for retinoblastoma-related protein, exons 1-16
          Length = 8716

 Score =  113 bits (57), Expect = 8e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                        
Query: 423  tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 482
            |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||| || |
Sbjct: 6748 tatttatagcagccaaatctttagatgggctctgataagcatgggtgccttcaccaatgc 6689

                                             
Query: 483  aagcataaaaactcctcgaacttggtgaaagca 515
            | |||||||||||||| ||||||||||| ||||
Sbjct: 6688 atgcataaaaactcctggaacttggtgacagca 6656



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 99/114 (86%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                        
Query: 526  cttggtttgacgcagaggagaaatataaacattatgggaagatgagactttctttgggga 585
            ||||||||| |||| |||||| | ||| |||||||| |||| ||| ||||||||||||||
Sbjct: 6088 cttggtttgccgcaaaggagacacatatacattatgagaagctgaaactttctttgggga 6029

                                                                  
Query: 586  catatctggtagatttgagaagggagatgacctttggtgatccaggaatttggc 639
            ||||||||||| ||||| ||| |||||| | ||| ||||||||||||| |||||
Sbjct: 6028 catatctggtaaatttgggaaaggagat-agcttcggtgatccaggaacttggc 5976



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 324  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 383
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 6940 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 6881

                      
Query: 384  ttcgagtgtt 393
             |||| ||||
Sbjct: 6880 atcgactgtt 6871
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>gb|AY109345.1| Zea mays CL1187_1 mRNA sequence
          Length = 4369

 Score =  109 bits (55), Expect = 1e-20
 Identities = 146/175 (83%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                        
Query: 495  tcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaa 554
            |||| ||||||||||| |||| |  ||||  ||||||||| |||| |||||| | ||| |
Sbjct: 2484 tcctggaacttggtgacagcagtagatccaacttggtttgccgcaaaggagacacatata 2425

                                                                        
Query: 555  cattatgggaagatgagactttctttggggacatatctggtagatttgagaagggagatg 614
            ||||||| || | ||| |||||||| |||||||||||||||| ||||| ||| |||||||
Sbjct: 2424 cattatgagatgctgaaactttcttcggggacatatctggtaaatttgggaaaggagatg 2365

                                                                   
Query: 615  acctttggtgatccaggaatttggctattatgattcttcttgttgtctggatgag 669
              ||| ||||||||||||||||||| | ||  |||||||||||  ||||||||||
Sbjct: 2364 -gcttgggtgatccaggaatttggccactagcattcttcttgtcttctggatgag 2311



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 102/126 (80%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 394
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2644 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2585

                                                                        
Query: 395  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 454
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2584 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2525

                  
Query: 455  tgataa 460
            ||||||
Sbjct: 2524 tgataa 2519



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 127  ctgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttatt 186
            |||||||| ||| |||||||| | |||||||||| || |  || |||| | |||||||||
Sbjct: 2850 ctgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttatt 2791

                    
Query: 187  cagaagaa 194
            ||||||||
Sbjct: 2790 cagaagaa 2783
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>gb|AY117036.1| Cocos nucifera retinoblastoma-like protein (Rb1) mRNA, complete cds
          Length = 3699

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 451  gctctgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtga 510
            ||||||||||||||| ||||| || || | |||||||||| | ||| | || ||||||||
Sbjct: 3197 gctctgataagcatgagtgctctcgccaacacaagcataatagctcttggagcttggtga 3138

                                                                        
Query: 511  aagcaatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatga 570
            ||||||||||||| |||| | |   |||| |||||||| ||| |||||||| | ||  ||
Sbjct: 3137 aagcaatgcatccatctttgatgatcgcaaaggagaaacatatacattatgagcagcaga 3078

                                                      
Query: 571  gactttctttggggacatatctggtagatttgagaagggaga 612
             ||||||||||| ||||||||||| ||||||| ||| |||||
Sbjct: 3077 aactttctttggtgacatatctggaagatttgggaaaggaga 3036
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>dbj|AB015221.1| Nicotiana tabacum NtRb1 mRNA, complete cds
          Length = 3271

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 451  gctctgataagcatgggtgctttcaccgatacaagcataa 490
            ||||||||||||||| |||||||| || | ||||||||||
Sbjct: 2890 gctctgataagcatgagtgctttctcccacacaagcataa 2851
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>gb|AY699399.1| Nicotiana benthamiana retinoblastoma protein mRNA, complete cds
          Length = 3012

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 451  gctctgataagcatgggtgctttcaccgatacaagcataa 490
            ||||||||||||||| |||||||| || | ||||||||||
Sbjct: 2826 gctctgataagcatgagtgctttctcccacacaagcataa 2787
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>gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC1 scRNA gene, complete
              sequence; hypothetical protein and cyclin D1 (Ccnd1) genes,
              complete cds
          Length = 154480

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 444    cagatgagctctgataagcat 464
              |||||||||||||||||||||
Sbjct: 114175 cagatgagctctgataagcat 114195
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>gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome 7, complete sequence
          Length = 145046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 444    cagatgagctctgataagcat 464
              |||||||||||||||||||||
Sbjct: 111812 cagatgagctctgataagcat 111792
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>gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 247105

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 408    tgtaatttagacaattatttatagc 432
              ||||||||||||||||||| |||||
Sbjct: 121889 tgtaatttagacaattattaatagc 121913
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>emb|AL160007.10| Human DNA sequence from clone RP4-798P15 on chromosome 1q24.1-25.2
             Contains the 3' end of a gene for regucalcin gene promotor
             region related protein (RGPR), DKFZp686C2486, complete
             sequence
          Length = 112732

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   agaggcagggacaccatttgg 333
             |||||||||||||||||||||
Sbjct: 28452 agaggcagggacaccatttgg 28432
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>emb|AL139156.11| Human DNA sequence from clone RP4-800M22 on chromosome 1p32.3-34.1
              Contains the 5' end of the MADHIP gene for mothers against
              decapentaplegic (MAD) homolog (Drosophila) interacting
              protein receptor activation anchor, a pseudogene similar to
              part of alcohol dehydrogenase 5 (class III) chi
              polypeptidem (ADH5), a transformer-2 alpha (TRA2A)
              pseudogene, a IAP-associated factor VIAF1 (VIAF1)
              pseudogene, a pseudogene similar to part of ribosomal
              protein L9 (RPL9), the 3' end of the gene for a novel
              protein similar to RNA polymerase B transcription factor 3
              (MGC23908) and a CpG island, complete sequence
          Length = 138985

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 545    gaaatataaacattatgggaa 565
              |||||||||||||||||||||
Sbjct: 132064 gaaatataaacattatgggaa 132084
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>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 444   cagatgagctctgataagcat 464
             |||||||||||||||||||||
Sbjct: 16940 cagatgagctctgataagcat 16920
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>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     aacagctggaaaataaaataa 84
              |||||||||||||||||||||
Sbjct: 120209 aacagctggaaaataaaataa 120189
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>gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequence
          Length = 73907

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    agctggaaaataaaataatac 87
             |||||||||||||||||||||
Sbjct: 48347 agctggaaaataaaataatac 48327
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>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    ctggaaaataaaataatacat 89
             |||||||||||||||||||||
Sbjct: 53536 ctggaaaataaaataatacat 53516
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>gb|AC105754.3| Homo sapiens chromosome 1 clone RP4-814E15, complete sequence
          Length = 133799

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 545   gaaatataaacattatgggaa 565
             |||||||||||||||||||||
Sbjct: 35426 gaaatataaacattatgggaa 35446
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>gb|AF230739.1|AF230739 Euphorbia esula retinoblastoma-like protein mRNA, partial cds
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 550  ataaacattatgggaagatgagactttctttggggacatatctgg 594
            |||||||||||| || |  || ||||| |||||||||||||||||
Sbjct: 2115 ataaacattatgtgatgcagaaactttttttggggacatatctgg 2071



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 451  gctctgataagcatgggtgctttc 474
            ||||||||||||||| ||||||||
Sbjct: 2214 gctctgataagcatgagtgctttc 2191
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>emb|BX469932.7| Mouse DNA sequence from clone RP23-391L6 on chromosome X, complete
             sequence
          Length = 116319

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    tgtttttaacagctggaaaat 77
             |||||||||||||||||||||
Sbjct: 55552 tgtttttaacagctggaaaat 55532
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>gb|AY832292.1| Platanus occidentalis ribosomal protein S4 (rps4) gene, partial
           cds; mitochondrial
          Length = 961

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 621 ggtgatccaggaatttggctattat 645
           ||||||||||||||||| |||||||
Sbjct: 510 ggtgatccaggaatttgcctattat 486
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>gb|AY832286.1| Calycanthus floridus ribosomal protein S4 (rps4) gene, partial cds;
           mitochondrial
          Length = 959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 621 ggtgatccaggaatttggctattat 645
           ||||||||||||||||| |||||||
Sbjct: 510 ggtgatccaggaatttgcctattat 486
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>dbj|AB071771.1| Capsicum annuum rps4 gene for ribosomal protein S4, partial cds
          Length = 393

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 621 ggtgatccaggaatttggctattat 645
           ||||||||||||||||| |||||||
Sbjct: 46  ggtgatccaggaatttgcctattat 22
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>gb|AC151748.1| Ornithorhynchus anatinus chromosome UNK clone OABb-532A1, complete
              sequence
          Length = 114806

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     ttttaacagctggaaaataaaata 83
              |||||||||| |||||||||||||
Sbjct: 112295 ttttaacagcaggaaaataaaata 112318
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>gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, complete sequence
          Length = 250215

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    taatttagacaattatttat 429
              ||||||||||||||||||||
Sbjct: 159238 taatttagacaattatttat 159219
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>emb|CR352310.15| Zebrafish DNA sequence from clone CH211-254E10 in linkage group 24,
             complete sequence
          Length = 181023

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   atttagacaattatttatag 431
             ||||||||||||||||||||
Sbjct: 42573 atttagacaattatttatag 42554
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>ref|XM_647750.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (103.t00024)
          partial mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 70 tggaaaataaaataatacat 89
          ||||||||||||||||||||
Sbjct: 57 tggaaaataaaataatacat 38
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>emb|AL358975.8| Human DNA sequence from clone RP11-375O18 on chromosome 9 Contains a
              novel gene, the 5' end of the TLE4 gene for transducin-like
              enhancer of split 4 (E(sp1) homolog, Drosophila) (ESG4) and
              a CpG island, complete sequence
          Length = 196337

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tttttaacagctggaaaata 78
              ||||||||||||||||||||
Sbjct: 141964 tttttaacagctggaaaata 141983
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>emb|X63603.1|NTACTI N.tabacum gene for actin
          Length = 5496

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   atattgccggttattatttt 41
            ||||||||||||||||||||
Sbjct: 2122 atattgccggttattatttt 2103
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>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12
          Length = 295050

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 233    gatgctcatttatttgctcaagaa 256
              |||||| |||||||||||||||||
Sbjct: 280580 gatgcttatttatttgctcaagaa 280557
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>gb|AY289003.1|AY289003S1 Danio rerio signal transducer and activator of transcription 5 (stat5)
             gene, exons 3 through 9
          Length = 23285

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tttacacactgaaaaatatt 26
             ||||||||||||||||||||
Sbjct: 21021 tttacacactgaaaaatatt 21002
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>gb|AC160537.6| Mus musculus chromosome 8, clone RP24-95H19, complete sequence
          Length = 188409

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaaataaaataatacatcag 92
             ||||||||||||||||||||
Sbjct: 55561 aaaataaaataatacatcag 55580
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>emb|CR354422.7| Zebrafish DNA sequence from clone CH211-129O4 in linkage group 20,
             complete sequence
          Length = 177570

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gctcatttatttgctcaaga 255
             ||||||||||||||||||||
Sbjct: 51866 gctcatttatttgctcaaga 51847
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>emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chromosome 4, complete
              sequence
          Length = 197763

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    tacaggagatgctcatttat 245
              ||||||||||||||||||||
Sbjct: 190135 tacaggagatgctcatttat 190154
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>dbj|AK056925.1| Homo sapiens cDNA FLJ32363 fis, clone PUAEN1000081
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 553  aacattatgggaagatgagactttcttt 580
            |||||| || ||||||||||||||||||
Sbjct: 1570 aacattgtgtgaagatgagactttcttt 1597
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>gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, complete sequence
          Length = 176997

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 478    gatacaagcataaaaactcctcgaactt 505
              ||||||||||| ||||||| ||||||||
Sbjct: 154524 gatacaagcatcaaaactcatcgaactt 154497
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>gb|AC114310.2| Homo sapiens chromosome 5 clone RP11-285K13, complete sequence
          Length = 157366

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 553   aacattatgggaagatgagactttcttt 580
             |||||| || ||||||||||||||||||
Sbjct: 41083 aacattgtgtgaagatgagactttcttt 41110
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>gb|AC114956.2| Homo sapiens chromosome 5 clone RP11-159F24, complete sequence
          Length = 104726

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 553   aacattatgggaagatgagactttcttt 580
             |||||| || ||||||||||||||||||
Sbjct: 19579 aacattgtgtgaagatgagactttcttt 19552
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>gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, complete sequence
          Length = 208360

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   acttattcagaagaacagaa 199
             ||||||||||||||||||||
Sbjct: 72559 acttattcagaagaacagaa 72578
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>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence
          Length = 201260

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     aaaataaaataatacatcag 92
              ||||||||||||||||||||
Sbjct: 154580 aaaataaaataatacatcag 154599
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>gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, region 89A-89B, BAC clone
              BACR04C07, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaaataaaataatacatcag 92
              ||||||||||||||||||||
Sbjct: 111395 aaaataaaataatacatcag 111376
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>gb|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15, complete sequence
          Length = 172004

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 275    ttccttgacaagaaactaaatgaa 298
              ||||||||||||||||| ||||||
Sbjct: 109151 ttccttgacaagaaactcaatgaa 109174
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>ref|XM_230634.3| PREDICTED: Rattus norvegicus kinesin family member 16B (predicted)
            (Kif16b_predicted), mRNA
          Length = 5856

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   acactagtgtttttaacagc 69
            ||||||||||||||||||||
Sbjct: 4103 acactagtgtttttaacagc 4084
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>ref|NM_198566.1| Homo sapiens FLJ32363 protein (FLJ32363), mRNA
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 553  aacattatgggaagatgagactttcttt 580
            |||||| || ||||||||||||||||||
Sbjct: 1570 aacattgtgtgaagatgagactttcttt 1597
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 555     cattatgggaagatgagactttct 578
               |||||||||||||||| |||||||
Sbjct: 3034055 cattatgggaagatgatactttct 3034032
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>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related protein
            1 (RB1) mRNA, complete cds
          Length = 3572

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 451  gctctgataagcatgggtgctttcaccgatacaagcataa 490
            |||||| |||||||||||||| || || | ||||||||||
Sbjct: 3142 gctctggtaagcatgggtgctctctccaacacaagcataa 3103
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>emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 in linkage group 3,
             complete sequence
          Length = 155431

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   acacagatgtacagttgaag 164
             ||||||||||||||||||||
Sbjct: 63768 acacagatgtacagttgaag 63787
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>gb|BC036867.1| Homo sapiens FLJ32363 protein, mRNA (cDNA clone MGC:46448
            IMAGE:5198039), complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 553  aacattatgggaagatgagactttcttt 580
            |||||| || ||||||||||||||||||
Sbjct: 1518 aacattgtgtgaagatgagactttcttt 1545
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>emb|BX088722.8| Zebrafish DNA sequence from clone CH211-253P18 in linkage group 20,
             complete sequence
          Length = 195359

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gctcatttatttgctcaaga 255
             ||||||||||||||||||||
Sbjct: 75723 gctcatttatttgctcaaga 75704
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>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the
             complete sequence
          Length = 236475

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaaataaaataatacatcag 92
             ||||||||||||||||||||
Sbjct: 61812 aaaataaaataatacatcag 61831
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>gb|BC087622.1| Xenopus laevis hypothetical LOC496107, mRNA (cDNA clone MGC:98835
            IMAGE:3401690), complete cds
          Length = 4592

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   tttaacagctggaaaataaa 80
            ||||||||||||||||||||
Sbjct: 3106 tttaacagctggaaaataaa 3125
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>dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205B2, complete
             sequence
          Length = 177515

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 478   gatacaagcataaaaactcctcgaactt 505
             ||||||||||| ||||||| ||||||||
Sbjct: 48535 gatacaagcatcaaaactcatcgaactt 48562
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>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence
          Length = 170634

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    tgtaatttagacaattattt 427
              ||||||||||||||||||||
Sbjct: 127303 tgtaatttagacaattattt 127284
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>emb|X83768.1|HSNFKB2PR H.sapiens NFKB2/LYT-10 gene promoter region
          Length = 2160

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 334  ttggcccagactgccagctaccac 357
            |||||||||||||||||| |||||
Sbjct: 1608 ttggcccagactgccagccaccac 1631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,245,617
Number of Sequences: 3902068
Number of extensions: 8245617
Number of successful extensions: 168065
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 167762
Number of HSP's gapped (non-prelim): 287
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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