>gb|U66061.1| Human germline T-cell receptor beta chain TCRBV17S1A1T, TCRBV2S1,
              TCRBV10S1P, TCRBV29S1P, TCRBV19S1P, TCRBV15S1,
              TCRBV11S1A1T, HVB relic, TCRBV28S1P, TCRBV34S1, TCRBV14S1,
              TCRBV3S1, TCRBV4S1A1T, TRY4, TRY5, TRY6, TRY7, TRY8,
              TCRBD1, TCRBJ1S1, TCRBJ1S2, TCRBJ1S3, TCRBJ1S4, TCRBJ1S5,
              TCRBJ1S6, TCRBC1, TCRBD2, TCRBJ2S1, TCRBJ2S2, TCRBJ2S3,
              TCRBJ2S4, TCRBJ2S5, TCRBJ2S6, TCRBJ2S7, TCRBC2,
              TCRBV20S1A1N2 genes from bases 452324 to 684973 (section 3
              of 3)
          Length = 232650

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 35     tcttcctgattcatccttctccccacctcc 64
              |||||||||||| ||||| |||||||||||
Sbjct: 182467 tcttcctgattcttccttgtccccacctcc 182496

>gb|AF009664.1|HSTCRB1H Homo sapiens T cell receptor beta locus, 3' trypsinogen repeats
          Length = 35944

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 35    tcttcctgattcatccttctccccacctcc 64
             |||||||||||| ||||| |||||||||||
Sbjct: 35072 tcttcctgattcttccttgtccccacctcc 35101

>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 35     tcttcctgattcatccttctccccacctcc 64
              |||||||||||| ||||| |||||||||||
Sbjct: 634790 tcttcctgattcttccttgtccccacctcc 634819

>gb|AC104597.3| Homo sapiens BAC clone RP11-114L10 from 7, complete sequence
          Length = 161425

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 35    tcttcctgattcatccttctccccacctcc 64
             |||||||||||| ||||| |||||||||||
Sbjct: 43283 tcttcctgattcttccttgtccccacctcc 43312

>gb|AC099395.2| Homo sapiens BAC clone CTD-2152B9 from 7, complete sequence
          Length = 67826

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 35    tcttcctgattcatccttctccccacctcc 64
             |||||||||||| ||||| |||||||||||
Sbjct: 44502 tcttcctgattcttccttgtccccacctcc 44473

>gb|AC008869.5| Homo sapiens chromosome 5 clone CTD-2194L12, complete sequence
          Length = 227979

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 402    cagcatggccttccctctgggg 423
              ||||||||||||||||||||||
Sbjct: 137550 cagcatggccttccctctgggg 137529

>emb|CT571247.13| Mouse DNA sequence from clone RP24-116C19 on chromosome 17, complete
              sequence
          Length = 137161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     tcctcttgtgtttcttcctga 43
              |||||||||||||||||||||
Sbjct: 131857 tcctcttgtgtttcttcctga 131877

>emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chromosome 4, complete
              sequence
          Length = 121869

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     ttcctcttgtgtttcttcctg 42
              |||||||||||||||||||||
Sbjct: 112869 ttcctcttgtgtttcttcctg 112849

>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940130D9, complete sequence
          Length = 117683

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ggctctcgccgcacggcgcg 270
             ||||||||||||||||||||
Sbjct: 56916 ggctctcgccgcacggcgcg 56897

>gb|AC152565.1| Ornithorhynchus anatinus chromosome UNK clone OABb-145A1, complete
             sequence
          Length = 135384

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gttggcagaagcgggattag 181
             ||||||||||||||||||||
Sbjct: 80260 gttggcagaagcgggattag 80241

>gb|AC166776.6| Mus musculus chromosome 5, clone RP23-24K16, complete sequence
          Length = 216652

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    aggaagcttggggagaaaga 568
              ||||||||||||||||||||
Sbjct: 152292 aggaagcttggggagaaaga 152273

>ref|XM_597219.2| PREDICTED: Bos taurus similar to RNA polymerase II subunit A
            C-terminal domain phosphatase (TFIIF-associating CTD
            phosphatase) (LOC519011), partial mRNA
          Length = 2849

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ccctgcagcatggccttccc 416
            ||||||||||||||||||||
Sbjct: 1603 ccctgcagcatggccttccc 1584

>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence
          Length = 157809

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     tttcttcctgattcatccttctcc 56
              |||||| |||||||||||||||||
Sbjct: 124518 tttcttgctgattcatccttctcc 124541

>gb|AC124293.6| Homo sapiens chromosome 8, clone RP11-86O15, complete sequence
          Length = 111669

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tcatccttctccccacctcc 64
              ||||||||||||||||||||
Sbjct: 107018 tcatccttctccccacctcc 106999

>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence
          Length = 143266

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tcctcttgtgtttcttcctg 42
             ||||||||||||||||||||
Sbjct: 14665 tcctcttgtgtttcttcctg 14684

>gb|AC074263.5| Homo sapiens BAC clone RP11-324M21 from 7, complete sequence
          Length = 65580

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   tttcttcctgattcatccttctcc 56
            |||||| |||||||||||||||||
Sbjct: 8682 tttcttgctgattcatccttctcc 8659

>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence
          Length = 154325

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     tttcttcctgattcatccttctcc 56
              |||||| |||||||||||||||||
Sbjct: 137444 tttcttgctgattcatccttctcc 137421

>emb|AL445306.7| Human DNA sequence from clone RP11-62C22 on chromosome X Contains a
              telomeric repeat binding factor (NIMA-interacting) 1
              (TERF1) pseudogene and a novel gene, complete sequence
          Length = 158022

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    gaaggaagcttggggagaaa 566
              ||||||||||||||||||||
Sbjct: 143602 gaaggaagcttggggagaaa 143621

>emb|AL159169.14| Human DNA sequence from clone RP11-408A13 on chromosome 9 Contains a
             pseudogene similar to part of cell division cycle
             associated 4 (CDCA4) (HEPP, FLJ20764) and a pseudogene
             similar to part of nuclear factor I/A (NFIA), complete
             sequence
          Length = 86155

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ttgtgtttcttcctgattca 47
             ||||||||||||||||||||
Sbjct: 70023 ttgtgtttcttcctgattca 70004

>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940141D9, complete sequence
          Length = 117679

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ggctctcgccgcacggcgcg 270
             ||||||||||||||||||||
Sbjct: 60765 ggctctcgccgcacggcgcg 60784

>emb|AL160406.8| Human DNA sequence from clone RP3-493L23 on chromosome 6, complete
            sequence
          Length = 60901

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   tcatccttctccccacctcc 64
            ||||||||||||||||||||
Sbjct: 7147 tcatccttctccccacctcc 7128

>emb|AL121941.14|HSDJ235B9 Human DNA sequence from clone RP1-235B9 on chromosome 6q15-16.1
             Contains part of the BACH2 gene for BTB and CNC homology 1
             basic leucine zipper transcription factor 2, complete
             sequence
          Length = 61884

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    atccttctccccacctccaa 66
             ||||||||||||||||||||
Sbjct: 16499 atccttctccccacctccaa 16480

>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tcctcttgtgtttcttcctg 42
              ||||||||||||||||||||
Sbjct: 172330 tcctcttgtgtttcttcctg 172349

>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
              sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    ggctcagccagtgatggtgc 483
              ||||||||||||||||||||
Sbjct: 105270 ggctcagccagtgatggtgc 105289

>gb|AC007403.4| Homo sapiens BAC clone RP11-547F18 from 2, complete sequence
          Length = 176321

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 548    aaggaagcttggggagaaag 567
              ||||||||||||||||||||
Sbjct: 140619 aaggaagcttggggagaaag 140600

>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence
          Length = 189042

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tcatccttctccccacctcc 64
             ||||||||||||||||||||
Sbjct: 82025 tcatccttctccccacctcc 82044

>gb|AE004698.1| Pseudomonas aeruginosa PAO1, section 259 of 529 of the complete
            genome
          Length = 11466

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  tgttgtgcgcaacagctgga 333
            ||||||||||||||||||||
Sbjct: 1182 tgttgtgcgcaacagctgga 1163

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 527     cagatcaggtaggtgaggta 546
               ||||||||||||||||||||
Sbjct: 2036886 cagatcaggtaggtgaggta 2036867

>emb|Z24337.1|HS317ZB1 H. sapiens (D6S462) DNA segment containing (CA) repeat; clone
          AFM317zb1; single read
          Length = 392

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 47 atccttctccccacctccaa 66
          ||||||||||||||||||||
Sbjct: 77 atccttctccccacctccaa 58

>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192462

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    ctcgcggtgaagggcggcgg 235
              ||||||||||||||||||||
Sbjct: 148850 ctcgcggtgaagggcggcgg 148869

>gb|AC157951.2| Gallus gallus BAC clone CH261-173J5 from chromosome unknown, complete
             sequence
          Length = 206432

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gtgtttcttcctgattcatc 49
             ||||||||||||||||||||
Sbjct: 20822 gtgtttcttcctgattcatc 20803

>gb|AC145914.4| Gallus gallus BAC clone CH261-78G10 from chromosome unknown, complete
             sequence
          Length = 228201

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    gtgtttcttcctgattcatc 49
             ||||||||||||||||||||
Sbjct: 43416 gtgtttcttcctgattcatc 43435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,118,792
Number of Sequences: 3902068
Number of extensions: 4118792
Number of successful extensions: 79498
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79421
Number of HSP's gapped (non-prelim): 77
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)