ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29l16 |
|---|---|
| Clone Library Name | barley_pub |
>PSL4_HUMAN (Q8TCT6) Signal peptide peptidase-like 3 (EC 3.4.23.-) (SPP-like 3| protein) (Intramembrane protease 2) (IMP2) (Presenilin-like protein 4) Length = 385 Score = 87.0 bits (214), Expect = 4e-17 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Frame = -2 Query: 644 KIELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSK------ 483 ++ LP KLVFP ST + MLG+GD+ +PG+LL VL +D+ K + Sbjct: 248 RLSLPGKLVFP---------SSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSC 298 Query: 482 DVTVTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYL 303 +++S ++ Y L GY VGL+TA A + ++ QPALLYLVP TL P++ + Sbjct: 299 GAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTM 358 Query: 302 SWLRNDLWELWEGSTTIVNEKAHLLEV 222 ++L+ DL +W + + LEV Sbjct: 359 AYLKGDLRRMWSEPFHSKSSSSRFLEV 385
>PSL4_MOUSE (Q9CUS9) Signal peptide peptidase-like 3 (EC 3.4.23.-) (SPP-like 3| protein) (Intramembrane protease 2) (IMP2) (Presenilin-like protein 4) Length = 384 Score = 87.0 bits (214), Expect = 4e-17 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Frame = -2 Query: 644 KIELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSK------ 483 ++ LP KLVFP ST + MLG+GD+ +PG+LL VL +D+ K + Sbjct: 247 RLSLPGKLVFP---------SSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSC 297 Query: 482 DVTVTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYL 303 +++S ++ Y L GY VGL+TA A + ++ QPALLYLVP TL P++ + Sbjct: 298 GAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTM 357 Query: 302 SWLRNDLWELWEGSTTIVNEKAHLLEV 222 ++L+ DL +W + + LEV Sbjct: 358 AYLKGDLRRMWSEPFHSKSSSSRFLEV 384
>YJ95_CAEEL (P49049) Hypothetical protein T05E11.5 in chromosome IV| Length = 468 Score = 72.4 bits (176), Expect = 1e-12 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = -2 Query: 653 ITKKIELPVKLVFPRNLL-GGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDV 477 + K I+ P+ L FP+++ GI+ S + MLGLGD+ IPG+ +AL+ FD+R + Sbjct: 319 VAKGIDAPILLQFPQDIYRNGIMEASK---HSMLGLGDIVIPGIFIALLRRFDYRVVQTT 375 Query: 476 TVTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSW 297 + S K R Y + Y GL +A ++ QPALLYLVP L + L+ Sbjct: 376 AESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAV 435 Query: 296 LRNDLWELW 270 +R +L LW Sbjct: 436 IRGELSALW 444
>HM13_HUMAN (Q8TCT9) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal| peptide peptidase) (Presenilin-like protein 3) (hIMP1 protein) Length = 377 Score = 69.3 bits (168), Expect = 1e-11 Identities = 42/128 (32%), Positives = 67/128 (52%) Frame = -2 Query: 653 ITKKIELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVT 474 + K E P+KLVFP++LL G ++ MLGLGD+ IPG+ +AL+L F Sbjct: 232 VAKSFEAPIKLVFPQDLLE---KGLEANNFAMLGLGDVVIPGIFIALLLRF--------- 279 Query: 473 VTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWL 294 D+S Y + + Y GL + + + QPALLYLVP+ +G V ++ Sbjct: 280 ---DISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336 Query: 293 RNDLWELW 270 + ++ E++ Sbjct: 337 KGEVTEMF 344
>HM13_MOUSE (Q9D8V0) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal| peptide peptidase) (Presenilin-like protein 3) Length = 378 Score = 68.6 bits (166), Expect = 2e-11 Identities = 42/128 (32%), Positives = 67/128 (52%) Frame = -2 Query: 653 ITKKIELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVT 474 + K E P+KLVFP++LL G ++ MLGLGD+ IPG+ +AL+L F Sbjct: 232 VAKSFEAPIKLVFPQDLLE---KGLEADNFAMLGLGDIVIPGIFIALLLRF--------- 279 Query: 473 VTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWL 294 D+S Y + + Y GL + + + QPALLYLVP+ +G V ++ Sbjct: 280 ---DISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336 Query: 293 RNDLWELW 270 + ++ E++ Sbjct: 337 KGEVAEMF 344
>PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.23.-) (SPP-like| 2A protein) (SPPL2a protein) (Intramembrane protease 3) (IMP3) (Presenilin-like protein 2) Length = 523 Score = 62.4 bits (150), Expect = 1e-09 Identities = 38/127 (29%), Positives = 63/127 (49%) Frame = -2 Query: 638 ELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDL 459 +LPV + P+ L+G V +LG GD+ +PG+L+A FD + + Sbjct: 386 KLPVVIRVPK-LMGYSVMSVCSVPVSVLGFGDIIVPGLLIAYCRRFDVQTGSSI------ 438 Query: 458 SPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLW 279 Y + Y VG++ ++ ++ QPALLYLVP TL V ++W R ++ Sbjct: 439 --------YYISSTIAYAVGMIITFVVLMVMKTGQPALLYLVPCTLITVSVVAWSRKEMK 490 Query: 278 ELWEGST 258 + W+GS+ Sbjct: 491 KFWKGSS 497
>PSL1_HUMAN (Q8TCT7) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) (Intramembrane protease 4) (IMP4) (Presenilin-like protein 1) Length = 592 Score = 58.5 bits (140), Expect = 2e-08 Identities = 44/126 (34%), Positives = 58/126 (46%) Frame = -2 Query: 638 ELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDL 459 +LP+ L PR + P + +LG GD+ +PG+L+A FD + V S Sbjct: 392 KLPMVLKVPRLNSSPLALCDRP--FSLLGFGDILVPGLLVAYCHRFD------IQVQSS- 442 Query: 458 SPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLW 279 R Y YGVGL+ A L Q QPALLYLVP TL ++ R +L Sbjct: 443 ------RVYFVACTIAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRRELG 496 Query: 278 ELWEGS 261 W GS Sbjct: 497 VFWTGS 502
>PSL1_MOUSE (Q3TD49) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) Length = 578 Score = 58.2 bits (139), Expect = 2e-08 Identities = 43/126 (34%), Positives = 59/126 (46%) Frame = -2 Query: 638 ELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDL 459 +LP+ L PR + P + +LG GD+ +PG+L+A FD + V S Sbjct: 385 KLPMVLKVPRLNTSPLSLCDRP--FSLLGFGDILVPGLLVAYCHRFD------IQVQSS- 435 Query: 458 SPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLW 279 R Y YG+GL+ A +L Q QPALLYLVP TL ++ R +L Sbjct: 436 ------RIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRRELG 489 Query: 278 ELWEGS 261 W GS Sbjct: 490 AFWTGS 495
>PSL1_CHICK (Q5F383) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) Length = 596 Score = 57.4 bits (137), Expect = 4e-08 Identities = 43/126 (34%), Positives = 58/126 (46%) Frame = -2 Query: 638 ELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDL 459 +LP+ L PR + P + +LG GD+ +PG+L+A FD + V S Sbjct: 388 KLPMVLKVPRLNSSPLALCDRP--FSLLGFGDILVPGLLVAYCHRFD------IQVQSS- 438 Query: 458 SPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLW 279 R Y YG+GL+ A L Q QPALLYLVP TL ++ R +L Sbjct: 439 ------RVYFVACTIAYGIGLLVTFVALALMQMGQPALLYLVPCTLITSFSVALWRKELA 492 Query: 278 ELWEGS 261 W GS Sbjct: 493 MFWTGS 498
>PSL2_HUMAN (Q8TCT8) Signal peptide peptidase-like 2A (EC 3.4.23.-) (Protein| SPP-like 2A) (Protein SPPL2a) (Intramembrane protease 3) (IMP3) (Presenilin-like protein 2) Length = 520 Score = 57.0 bits (136), Expect = 5e-08 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Frame = -2 Query: 560 MLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDLSPSSKRRKYVWF--ALTGYGVGLVTA 387 +LG GD+ +PG+L+A FD + Y+++ + Y +G++ Sbjct: 407 ILGFGDIIVPGLLIAYCRRFDVQTGSS---------------YIYYVSSTVAYAIGMILT 451 Query: 386 LAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLWELWEGST 258 +L + QPALLYLVP TL ++W R ++ + W+G++ Sbjct: 452 FVVLVLMKKGQPALLYLVPCTLITASVVAWRRKEMKKFWKGNS 494
>YKK0_YEAST (P34248) Hypothetical 67.5 kDa protein in APE1/LAP4-CWP1 intergenic| region Length = 587 Score = 56.6 bits (135), Expect = 6e-08 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 3/131 (2%) Frame = -2 Query: 653 ITKKIELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRK---SK 483 + +++PVKL P ++ +LGLGD+A+PGM +A+ +D K Sbjct: 379 VATNLDIPVKLSLPVKFN----TAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDH 434 Query: 482 DVTVTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYL 303 D T L+ S KY A+ Y LV+A+ + + + QPALLY+VPS L + + Sbjct: 435 DDTEFHFLNWSYVG-KYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILV 493 Query: 302 SWLRNDLWELW 270 + D + W Sbjct: 494 ACWNKDFKQFW 504
>PSL1_RAT (Q5PQL3) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) Length = 577 Score = 55.8 bits (133), Expect = 1e-07 Identities = 41/126 (32%), Positives = 59/126 (46%) Frame = -2 Query: 638 ELPVKLVFPRNLLGGIVPGSTPGDYMMLGLGDMAIPGMLLALVLSFDHRKSKDVTVTSDL 459 +LP+ L PR + P + +LG GD+ +PG+L+A FD + V S Sbjct: 385 KLPMVLKVPRLNTSPLSLCDRP--FSLLGFGDILVPGLLVAYCHRFD------IQVQSS- 435 Query: 458 SPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVVYLSWLRNDLW 279 R Y YG+GL+ A +L + QPALLYLVP TL ++ R ++ Sbjct: 436 ------RIYFVACTIAYGLGLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREMG 489 Query: 278 ELWEGS 261 W GS Sbjct: 490 AFWTGS 495
>YGBN_ECOLI (Q46892) Inner membrane permease ygbN| Length = 454 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Frame = -2 Query: 665 GLQLITKKIELPVKLVFPRNLLGGIVPGSTP--GDYMMLGLGDMAIPGMLLALVLSF--- 501 G+ L+T I +P+ ++ + ++P S P G ++G +A +++ALVL+F Sbjct: 236 GVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVA---LMIALVLAFWLL 292 Query: 500 DHRKSKDVTVTSDLSPSSKRRKYVWFALTGYG 405 R+ + TSD+ S+ V +TG G Sbjct: 293 ALRRGWSLQHTSDIMGSALPTAAVVILVTGAG 324
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = -2 Query: 479 VTVTSD----LSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYL 336 V VTS+ +S +S+ K WFA GY V + TA A +L + L+YL Sbjct: 462 VQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVYL 513
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = -2 Query: 479 VTVTSD----LSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSPQPALLYL 336 V VTS+ +S +S+ K WFA GY V + TA A +L + L+YL Sbjct: 467 VQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVYL 518
>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)| Length = 5147 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = -2 Query: 551 LGDMAIPGMLLALVLSFDHRKSKDVTVTSDLSPSSKRRKYVWFAL 417 LG+ A P ++AL+ + DH + + +VT L+PS +R + FAL Sbjct: 608 LGEDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFAL 652
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Frame = +2 Query: 236 EPSRSQLWWILPTAPTDHSSTMTGTQR---------ARVSRAPGRVEQAGETETRSQLPM 388 + RSQL+W LP+ ++ +T R + +A + E E SQL Sbjct: 433 QQKRSQLFWDLPSLNSESLATTVWVSRNPSSQNAHSVPLDKASTSLPGEPEVEASSQLSQ 492 Query: 389 QLPNQHHNLLAQTIHISAA 445 P HH +AQ H + A Sbjct: 493 APPQPHH--MAQPQHFTPA 509
>NU6M_CYCPS (P43199) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH| dehydrogenase subunit 6) Length = 173 Score = 30.0 bits (66), Expect = 6.5 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%) Frame = -2 Query: 605 LLGGIVPGSTPGDY---MMLGLGDMAIPGMLLALVLSFD-------HRKSKDVTVTSDLS 456 +LGG+ S P Y + L L +A G LL+L +SF + V +S Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 455 PSSKRRKYVW--FALTGYGVGLVTALAAGIL 369 ++ W + + GYGVG V L AG++ Sbjct: 73 LAADPFPEAWGDWGVVGYGVGFVVVLVAGLI 103
>YGCH_ECOLI (Q46897) Hypothetical protein ygcH| Length = 199 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/74 (28%), Positives = 37/74 (50%) Frame = -2 Query: 536 IPGMLLALVLSFDHRKSKDVTVTSDLSPSSKRRKYVWFALTGYGVGLVTALAAGILSQSP 357 +P + A +++ RK + D+ P S+R +Y F+ G + T G+L+ + Sbjct: 114 VPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQY--FSGDGKSGKIQTVCFEGVLTIND 171 Query: 356 QPALLYLVPSTLGP 315 PAL+ LV +GP Sbjct: 172 APALIDLVQQGIGP 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,582,417 Number of Sequences: 219361 Number of extensions: 2231584 Number of successful extensions: 5839 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5589 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5820 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
