| Clone Name | rbags29l16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196306.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0068A07.18), mRNA Length = 1116 Score = 323 bits (163), Expect = 4e-85 Identities = 369/437 (84%), Gaps = 3/437 (0%) Strand = Plus / Minus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 1109 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 1050 Query: 286 tcattcctcaaccatgacaggtacacaacgggcccgagtgtcgagggcaccaggtagagt 345 || |||||||||||||||| |||| ||| ||||| || || || || |||||||| ||| Sbjct: 1049 tcgttcctcaaccatgacatatacataacaggcccaagcgttgatggtaccaggtacagt 990 Query: 346 agagcaggctggggagactgagacaagatcccagctgccaatgcagttaccaaaccaaca 405 | |||||||||||||||||| || ||||||||||| ||||| || |||||||| |||||| Sbjct: 989 aaagcaggctggggagactgggataagatcccagcagccaaagccgttaccaagccaaca 930 Query: 406 ccataacctgttagcgcaaaccatacatatttccgccgctttgaggagggggacaagtct 465 ||||||||||| |||||| ||||||||||||||||| | || ||||| | || |||| Sbjct: 929 ccataacctgtcagcgcataccatacatatttccgctgttt---cgagggaggcatgtct 873 Query: 466 gatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtacaagagctagaagc 525 || |||| ||| ||||||| |||| || ||||| || ||||||||||||||||||||| Sbjct: 872 tgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtacaagagctagaagc 813 Query: 526 atccctgggatggccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcct 585 |||||||| |||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct: 812 atccctggaatggccatgtctccaaggccgagcatcatatagtccccaggactgcttcct 753 Query: 586 ggaacaatcccgcccaacaaattcctagggaagacaagtttcaccggaagctctatcttc 645 ||| ||| ||| |||| |||| |||| ||||||||||| || || ||||| |||| |||| Sbjct: 752 ggagcaagcccacccatcaaactcctggggaagacaagcttgactggaagttctagcttc 693 Query: 646 ttcgtaatcaactgcaa 662 || ||||||| |||||| Sbjct: 692 tttgtaatcagctgcaa 676
>dbj|AK072853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L10, full insert sequence Length = 1523 Score = 323 bits (163), Expect = 4e-85 Identities = 369/437 (84%), Gaps = 3/437 (0%) Strand = Plus / Minus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 1326 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 1267 Query: 286 tcattcctcaaccatgacaggtacacaacgggcccgagtgtcgagggcaccaggtagagt 345 || |||||||||||||||| |||| ||| ||||| || || || || |||||||| ||| Sbjct: 1266 tcgttcctcaaccatgacatatacataacaggcccaagcgttgatggtaccaggtacagt 1207 Query: 346 agagcaggctggggagactgagacaagatcccagctgccaatgcagttaccaaaccaaca 405 | |||||||||||||||||| || ||||||||||| ||||| || |||||||| |||||| Sbjct: 1206 aaagcaggctggggagactgggataagatcccagcagccaaagccgttaccaagccaaca 1147 Query: 406 ccataacctgttagcgcaaaccatacatatttccgccgctttgaggagggggacaagtct 465 ||||||||||| |||||| ||||||||||||||||| | || ||||| | || |||| Sbjct: 1146 ccataacctgtcagcgcataccatacatatttccgctgttt---cgagggaggcatgtct 1090 Query: 466 gatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtacaagagctagaagc 525 || |||| ||| ||||||| |||| || ||||| || ||||||||||||||||||||| Sbjct: 1089 tgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtacaagagctagaagc 1030 Query: 526 atccctgggatggccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcct 585 |||||||| |||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct: 1029 atccctggaatggccatgtctccaaggccgagcatcatatagtccccaggactgcttcct 970 Query: 586 ggaacaatcccgcccaacaaattcctagggaagacaagtttcaccggaagctctatcttc 645 ||| ||| ||| |||| |||| |||| ||||||||||| || || ||||| |||| |||| Sbjct: 969 ggagcaagcccacccatcaaactcctggggaagacaagcttgactggaagttctagcttc 910 Query: 646 ttcgtaatcaactgcaa 662 || ||||||| |||||| Sbjct: 909 tttgtaatcagctgcaa 893
>dbj|AK061008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A08, full insert sequence Length = 1478 Score = 323 bits (163), Expect = 4e-85 Identities = 369/437 (84%), Gaps = 3/437 (0%) Strand = Plus / Minus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 1282 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 1223 Query: 286 tcattcctcaaccatgacaggtacacaacgggcccgagtgtcgagggcaccaggtagagt 345 || |||||||||||||||| |||| ||| ||||| || || || || |||||||| ||| Sbjct: 1222 tcgttcctcaaccatgacatatacataacaggcccaagcgttgatggtaccaggtacagt 1163 Query: 346 agagcaggctggggagactgagacaagatcccagctgccaatgcagttaccaaaccaaca 405 | |||||||||||||||||| || ||||||||||| ||||| || |||||||| |||||| Sbjct: 1162 aaagcaggctggggagactgggataagatcccagcagccaaagccgttaccaagccaaca 1103 Query: 406 ccataacctgttagcgcaaaccatacatatttccgccgctttgaggagggggacaagtct 465 ||||||||||| |||||| ||||||||||||||||| | || ||||| | || |||| Sbjct: 1102 ccataacctgtcagcgcataccatacatatttccgctgttt---cgagggaggcatgtct 1046 Query: 466 gatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtacaagagctagaagc 525 || |||| ||| ||||||| |||| || ||||| || ||||||||||||||||||||| Sbjct: 1045 tgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtacaagagctagaagc 986 Query: 526 atccctgggatggccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcct 585 |||||||| |||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct: 985 atccctggaatggccatgtctccaaggccgagcatcatatagtccccaggactgcttcct 926 Query: 586 ggaacaatcccgcccaacaaattcctagggaagacaagtttcaccggaagctctatcttc 645 ||| ||| ||| |||| |||| |||| ||||||||||| || || ||||| |||| |||| Sbjct: 925 ggagcaagcccacccatcaaactcctggggaagacaagcttgactggaagttctagcttc 866 Query: 646 ttcgtaatcaactgcaa 662 || ||||||| |||||| Sbjct: 865 tttgtaatcagctgcaa 849
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence Length = 154505 Score = 168 bits (85), Expect = 1e-38 Identities = 177/207 (85%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 334 accaggtagagtagagcaggctggggagactgagacaagatcccagctgccaatgcagtt 393 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||| Sbjct: 118051 accaggtacagtaaagcaggctggggagactgggataagatcccagcagccaaagccgtt 118110 Query: 394 accaaaccaacaccataacctgttagcgcaaaccatacatatttccgccgctttgaggag 453 ||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||| Sbjct: 118111 accaagccaacaccataacctgtcagcgcataccatacatatttccgctgttt---cgag 118167 Query: 454 ggggacaagtctgatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtaca 513 || | || |||| || |||| ||| ||||||| |||| || ||||| || ||||||||| Sbjct: 118168 ggaggcatgtcttgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtaca 118227 Query: 514 agagctagaagcatccctgggatggcc 540 |||||||||||||||||||| |||||| Sbjct: 118228 agagctagaagcatccctggaatggcc 118254 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 539 ccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcctggaacaatcccgc 598 |||||||||||||||| |||||||| ||||| |||||| ||||||||||| ||| ||| | Sbjct: 118890 ccatgtctccaaggccgagcatcatatagtccccaggactgcttcctggagcaagcccac 118949 Query: 599 ccaacaaattcctagggaagacaagtttcaccggaagctctatcttcttcgtaatcaact 658 ||| |||| |||| ||||||||||| || || ||||| |||| |||||| ||||||| || Sbjct: 118950 ccatcaaactcctggggaagacaagcttgactggaagttctagcttctttgtaatcagct 119009 Query: 659 gcaa 662 |||| Sbjct: 119010 gcaa 119013 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 117762 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 117821 Query: 286 tcattcctcaaccatgaca 304 || |||||||||||||||| Sbjct: 117822 tcgttcctcaaccatgaca 117840
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 168 bits (85), Expect = 1e-38 Identities = 177/207 (85%), Gaps = 3/207 (1%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctggggagactgagacaagatcccagctgccaatgcagtt 393 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||| Sbjct: 165642 accaggtacagtaaagcaggctggggagactgggataagatcccagcagccaaagccgtt 165583 Query: 394 accaaaccaacaccataacctgttagcgcaaaccatacatatttccgccgctttgaggag 453 ||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||| Sbjct: 165582 accaagccaacaccataacctgtcagcgcataccatacatatttccgctgttt---cgag 165526 Query: 454 ggggacaagtctgatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtaca 513 || | || |||| || |||| ||| ||||||| |||| || ||||| || ||||||||| Sbjct: 165525 ggaggcatgtcttgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtaca 165466 Query: 514 agagctagaagcatccctgggatggcc 540 |||||||||||||||||||| |||||| Sbjct: 165465 agagctagaagcatccctggaatggcc 165439 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 539 ccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcctggaacaatcccgc 598 |||||||||||||||| |||||||| ||||| |||||| ||||||||||| ||| ||| | Sbjct: 164803 ccatgtctccaaggccgagcatcatatagtccccaggactgcttcctggagcaagcccac 164744 Query: 599 ccaacaaattcctagggaagacaagtttcaccggaagctctatcttcttcgtaatcaact 658 ||| |||| |||| ||||||||||| || || ||||| |||| |||||| ||||||| || Sbjct: 164743 ccatcaaactcctggggaagacaagcttgactggaagttctagcttctttgtaatcagct 164684 Query: 659 gcaa 662 |||| Sbjct: 164683 gcaa 164680 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 165931 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 165872 Query: 286 tcattcctcaaccatgaca 304 || |||||||||||||||| Sbjct: 165871 tcgttcctcaaccatgaca 165853
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 168 bits (85), Expect = 1e-38 Identities = 177/207 (85%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 334 accaggtagagtagagcaggctggggagactgagacaagatcccagctgccaatgcagtt 393 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||| Sbjct: 12597964 accaggtacagtaaagcaggctggggagactgggataagatcccagcagccaaagccgtt 12598023 Query: 394 accaaaccaacaccataacctgttagcgcaaaccatacatatttccgccgctttgaggag 453 ||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||| Sbjct: 12598024 accaagccaacaccataacctgtcagcgcataccatacatatttccgctgttt---cgag 12598080 Query: 454 ggggacaagtctgatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtaca 513 || | || |||| || |||| ||| ||||||| |||| || ||||| || ||||||||| Sbjct: 12598081 ggaggcatgtcttgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtaca 12598140 Query: 514 agagctagaagcatccctgggatggcc 540 |||||||||||||||||||| |||||| Sbjct: 12598141 agagctagaagcatccctggaatggcc 12598167 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 539 ccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcctggaacaatcccgc 598 |||||||||||||||| |||||||| ||||| |||||| ||||||||||| ||| ||| | Sbjct: 12598803 ccatgtctccaaggccgagcatcatatagtccccaggactgcttcctggagcaagcccac 12598862 Query: 599 ccaacaaattcctagggaagacaagtttcaccggaagctctatcttcttcgtaatcaact 658 ||| |||| |||| ||||||||||| || || ||||| |||| |||||| ||||||| || Sbjct: 12598863 ccatcaaactcctggggaagacaagcttgactggaagttctagcttctttgtaatcagct 12598922 Query: 659 gcaa 662 |||| Sbjct: 12598923 gcaa 12598926 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 12597675 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 12597734 Query: 286 tcattcctcaaccatgaca 304 || |||||||||||||||| Sbjct: 12597735 tcgttcctcaaccatgaca 12597753
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 168 bits (85), Expect = 1e-38 Identities = 177/207 (85%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 334 accaggtagagtagagcaggctggggagactgagacaagatcccagctgccaatgcagtt 393 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||| Sbjct: 12605260 accaggtacagtaaagcaggctggggagactgggataagatcccagcagccaaagccgtt 12605319 Query: 394 accaaaccaacaccataacctgttagcgcaaaccatacatatttccgccgctttgaggag 453 ||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||| Sbjct: 12605320 accaagccaacaccataacctgtcagcgcataccatacatatttccgctgttt---cgag 12605376 Query: 454 ggggacaagtctgatgtaacagtcacgtctttgctcttgcgatgatcgaaagagagtaca 513 || | || |||| || |||| ||| ||||||| |||| || ||||| || ||||||||| Sbjct: 12605377 ggaggcatgtcttgtgaaacactcatgtctttgatcttccggtgatcaaatgagagtaca 12605436 Query: 514 agagctagaagcatccctgggatggcc 540 |||||||||||||||||||| |||||| Sbjct: 12605437 agagctagaagcatccctggaatggcc 12605463 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 539 ccatgtctccaaggccaagcatcatgtagtcaccaggagtgcttcctggaacaatcccgc 598 |||||||||||||||| |||||||| ||||| |||||| ||||||||||| ||| ||| | Sbjct: 12606099 ccatgtctccaaggccgagcatcatatagtccccaggactgcttcctggagcaagcccac 12606158 Query: 599 ccaacaaattcctagggaagacaagtttcaccggaagctctatcttcttcgtaatcaact 658 ||| |||| |||| ||||||||||| || || ||||| |||| |||||| ||||||| || Sbjct: 12606159 ccatcaaactcctggggaagacaagcttgactggaagttctagcttctttgtaatcagct 12606218 Query: 659 gcaa 662 |||| Sbjct: 12606219 gcaa 12606222 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 226 tccagcaaatgagccttctcgttcacaattgtggtggatccttcccacagctcccacaga 285 |||| ||||||||| || ||||| | ||||| ||||||||||||| |||||||| || Sbjct: 12604971 tccaacaaatgagctttgtcgtttataattggcctggatccttcccatagctcccatagc 12605030 Query: 286 tcattcctcaaccatgaca 304 || |||||||||||||||| Sbjct: 12605031 tcgttcctcaaccatgaca 12605049
>gb|AY111606.1| Zea mays CL31164_1 mRNA sequence Length = 586 Score = 137 bits (69), Expect = 5e-29 Identities = 186/225 (82%) Strand = Plus / Plus Query: 216 atctcagacttccagcaaatgagccttctcgttcacaattgtggtggatccttcccacag 275 ||||||||| |||| ||||||||| |||||||||| ||| || || |||||||| || Sbjct: 197 atctcagacctccaacaaatgagctttctcgttcagaatcgtcccagacccttcccatag 256 Query: 276 ctcccacagatcattcctcaaccatgacaggtacacaacgggcccgagtgtcgagggcac 335 |||||| || ||||||| |||||||||| ||||| || || || |||||||| ||||| Sbjct: 257 ctcccatagctcattccgtaaccatgacaagtacatgacaggtcccagtgtcgatggcac 316 Query: 336 caggtagagtagagcaggctggggagactgagacaagatcccagctgccaatgcagttac 395 |||||| |||| || || || ||||||||||||||||||||||| || | ||||| ||| Sbjct: 317 caggtacagtaaggctggttgaggagactgagacaagatcccagcagctagtgcagctac 376 Query: 396 caaaccaacaccataacctgttagcgcaaaccatacatatttccg 440 ||| |||| |||||||||||||| ||| |||| ||||| ||||| Sbjct: 377 caagccaataccataacctgttacagcataccacacataattccg 421 Score = 123 bits (62), Expect = 8e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 507 gagtacaagagctagaagcatccctgggatggccatgtctccaaggccaagcatcatgta 566 |||||| | |||||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct: 485 gagtaccaaagctagaagcatccctggaatggccatgtctccaaggccaagccttatgta 544 Query: 567 gtcaccaggagtgcttcctggaacaa 592 |||||||||| ||||||||||||||| Sbjct: 545 gtcaccaggattgcttcctggaacaa 570
>emb|CR705006.2|CNS0G6XM Tetraodon nigroviridis full-length cDNA Length = 969 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctg 356 |||||||||||||||| ||||||||||| Sbjct: 948 agggcaccaggtagagcagagcaggctg 921
>ref|NM_001015068.1| Danio rerio signal peptide peptidase 3 (sppl3), mRNA Length = 1603 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctggg 358 ||||||||||||| || ||||||||||||| Sbjct: 1076 agggcaccaggtacaggagagcaggctggg 1047
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatattct 133 |||||||||||||||||||||| Sbjct: 126644 caaactatcttataaatattct 126665
>gb|BC097153.1| Danio rerio signal peptide peptidase 3, mRNA (cDNA clone MGC:114093 IMAGE:7441508), complete cds Length = 2656 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctggg 358 ||||||||||||| || ||||||||||||| Sbjct: 1261 agggcaccaggtacaggagagcaggctggg 1232
>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198205 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 112 caaactatcttataaatattct 133 |||||||||||||||||||||| Sbjct: 8361 caaactatcttataaatattct 8340
>gb|AY926459.1| Danio rerio signal peptide peptidase-like protein 3 mRNA, complete cds Length = 1603 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctggg 358 ||||||||||||| || ||||||||||||| Sbjct: 1076 agggcaccaggtacaggagagcaggctggg 1047
>ref|NM_119495.2| Arabidopsis thaliana D-alanyl-D-alanine endopeptidase AT4G33410 mRNA, complete cds Length = 1474 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 1043 gggatagccatgtcaccaagaccaagcatcatg 1011
>gb|BC028391.2| Homo sapiens signal peptide peptidase-like 2B, mRNA (cDNA clone MGC:33336 IMAGE:4822524), complete cds Length = 2594 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1455 agggcaccaggtagaggagagcgggctgg 1427
>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete sequence Length = 226856 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 gagctagaagcatccctggga 535 ||||||||||||||||||||| Sbjct: 105459 gagctagaagcatccctggga 105479
>emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on chromosome 17, complete sequence Length = 235642 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 gagctagaagcatccctggga 535 ||||||||||||||||||||| Sbjct: 209268 gagctagaagcatccctggga 209288
>gb|AC129599.3| Mus musculus BAC clone RP23-349A5 from chromosome 8, complete sequence Length = 188426 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 gagcaggctggggagactgag 367 ||||||||||||||||||||| Sbjct: 94058 gagcaggctggggagactgag 94078
>emb|CR647186.2|CNS0EYC8 Tetraodon nigroviridis full-length cDNA Length = 1701 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| || ||||||||| Sbjct: 1568 agggcaccaggtagagcagggcaggctgg 1540
>gb|BT000484.1| Arabidopsis thaliana unknown protein (At4g33410/F17M5_170) mRNA, complete cds Length = 1119 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 806 gggatagccatgtcaccaagaccaagcatcatg 774
>emb|CR624124.1| full-length cDNA clone CS0DC001YD08 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 2030 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 113 agggcaccaggtagaggagagcgggctgg 85
>emb|CR613332.1| full-length cDNA clone CS0DL005YO05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2492 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1470 agggcaccaggtagaggagagcgggctgg 1442
>emb|CR602216.1| full-length cDNA clone CS0DC007YO13 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1398 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 355 agggcaccaggtagaggagagcgggctgg 327
>gb|AY058181.1| Arabidopsis thaliana AT4g33410/F17M5_170 mRNA, complete cds Length = 1432 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 1010 gggatagccatgtcaccaagaccaagcatcatg 978
>ref|NM_020172.1| Homo sapiens signal peptide peptidase-like 2B (SPPL2B), transcript variant 1, mRNA Length = 1815 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1467 agggcaccaggtagaggagagcgggctgg 1439
>ref|NM_152988.1| Homo sapiens signal peptide peptidase-like 2B (SPPL2B), transcript variant 2, mRNA Length = 2557 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1471 agggcaccaggtagaggagagcgggctgg 1443
>gb|AC120137.16| Mus musculus chromosome 5, clone RP23-280O16, complete sequence Length = 181464 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 taacactttccttacagctaa 56 ||||||||||||||||||||| Sbjct: 110871 taacactttccttacagctaa 110851
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 caggaggttgtgatttttatg 202 ||||||||||||||||||||| Sbjct: 31031769 caggaggttgtgatttttatg 31031749
>emb|BX826814.1|CNS0A37K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZH02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1336 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 998 gggatagccatgtcaccaagaccaagcatcatg 966
>emb|BX828384.1|CNS0A32B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1443 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 1023 gggatagccatgtcaccaagaccaagcatcatg 991
>emb|BX828271.1|CNS0A303 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZG12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1376 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 1017 gggatagccatgtcaccaagaccaagcatcatg 985
>emb|BX828031.1|CNS0A301 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZA04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1385 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 gggatggccatgtctccaaggccaagcatcatg 564 ||||| |||||||| ||||| |||||||||||| Sbjct: 1033 gggatagccatgtcaccaagaccaagcatcatg 1001
>gb|BC093046.1| Homo sapiens signal peptide peptidase-like 2B, mRNA (cDNA clone MGC:111084 IMAGE:30395602), complete cds Length = 2610 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1518 agggcaccaggtagaggagagcgggctgg 1490
>gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-166J14, complete sequence Length = 174990 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaagat 374 ||||||||||||||||||||| Sbjct: 38586 ctggggagactgagacaagat 38566
>gb|AY169315.1| Homo sapiens intramembrane protease (IMP4) mRNA, complete cds Length = 1876 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1466 agggcaccaggtagaggagagcgggctgg 1438
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 caggaggttgtgatttttatg 202 ||||||||||||||||||||| Sbjct: 86725 caggaggttgtgatttttatg 86705
>dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585G03 Length = 173649 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 caggaggttgtgatttttatg 202 ||||||||||||||||||||| Sbjct: 20993 caggaggttgtgatttttatg 20973
>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete sequence Length = 196933 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaagat 374 ||||||||||||||||||||| Sbjct: 160707 ctggggagactgagacaagat 160687
>gb|AC004410.1|AC004410 Homo sapiens chromosome 19, fosmid 39554, complete sequence Length = 33917 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 11963 agggcaccaggtagaggagagcgggctgg 11935
>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete sequence Length = 189517 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 taacactttccttacagctaa 56 ||||||||||||||||||||| Sbjct: 8926 taacactttccttacagctaa 8906
>emb|AJ420897.1|HSA420897 Homo sapiens mRNA for SPPL2b protein Length = 1815 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1467 agggcaccaggtagaggagagcgggctgg 1439
>emb|AJ345027.1|HSA345027 Homo sapiens mRNA for presenilin-like protein 1 (PSL1 gene) Length = 2557 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1471 agggcaccaggtagaggagagcgggctgg 1443
>dbj|AB040965.1| Homo sapiens mRNA for KIAA1532 protein, partial cds Length = 3400 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 agggcaccaggtagagtagagcaggctgg 357 |||||||||||||||| ||||| |||||| Sbjct: 1467 agggcaccaggtagaggagagcgggctgg 1439
>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence Length = 219936 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tggggagactgagacaagat 374 |||||||||||||||||||| Sbjct: 41580 tggggagactgagacaagat 41561
>gb|AC154301.2| Mus musculus BAC clone RP23-392P5 from chromosome 14, complete sequence Length = 207510 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 acaaggtaaaaggcttagattact 106 ||||||| |||||||||||||||| Sbjct: 11999 acaaggtcaaaggcttagattact 11976
>ref|XM_508642.1| PREDICTED: Pan troglodytes similar to Microsomal signal peptidase 25 kDa subunit (SPase 25 kDa subunit) (SPC25) (LOC451423), mRNA Length = 1199 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 aggctggggagactgagaca 370 |||||||||||||||||||| Sbjct: 539 aggctggggagactgagaca 520
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 ccaaggccaagcatcatgta 566 |||||||||||||||||||| Sbjct: 4369228 ccaaggccaagcatcatgta 4369247
>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence Length = 186452 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tgttggatcatctcagactt 226 |||||||||||||||||||| Sbjct: 150142 tgttggatcatctcagactt 150161
>ref|NM_006656.4| Homo sapiens sialidase 3 (membrane sialidase) (NEU3), mRNA Length = 3540 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 aggctggggagactgagaca 370 |||||||||||||||||||| Sbjct: 896 aggctggggagactgagaca 877
>gb|AC122753.11| Mus musculus chromosome 5, clone RP24-492O4, complete sequence Length = 183819 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tggggagactgagacaagat 374 |||||||||||||||||||| Sbjct: 172166 tggggagactgagacaagat 172147
>gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosome 10, complete sequence Length = 183115 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 18130 accaggtagagtagtgcaggctgg 18153
>gb|AC131785.3| Mus musculus BAC clone RP24-397D13 from chromosome 17, complete sequence Length = 147557 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 agaatgagaagcttggagcagatt 162 |||||||||||||| ||||||||| Sbjct: 69309 agaatgagaagcttagagcagatt 69286
>gb|AY172857.1| Plasmodium sp. large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 290 caaactatcttataaatatt 309
>gb|AY172854.1| Plasmodium sp. large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 290 caaactatcttataaatatt 309
>gb|AY172853.1| Plasmodium sp. large subunit ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product Length = 558 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 288 caaactatcttataaatatt 307
>gb|AY172851.1| Plasmodium sp. large subunit ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product Length = 556 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 286 caaactatcttataaatatt 305
>ref|XM_723079.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07332) partial mRNA Length = 94 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 18 caaactatcttataaatatt 37
>ref|XM_720014.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04763) partial mRNA Length = 237 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 108 caaactatcttataaatatt 127
>ref|XM_735575.1| Plasmodium chabaudi chabaudi phospholipase (PC402542.00.0) partial mRNA Length = 360 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 140 caaactatcttataaatatt 159
>ref|XM_740820.1| Plasmodium chabaudi chabaudi hypothetical protein (PC103610.00.0) partial mRNA Length = 174 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 18 caaactatcttataaatatt 37
>gb|BC034206.1| Mus musculus cDNA clone IMAGE:4987336, **** WARNING: chimeric clone **** Length = 3180 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1033 accaggtagagtagtgcaggctgg 1010
>emb|AL355376.6| Human DNA sequence from clone RP11-478H13 on chromosome 10 Contains 3 novel genes and two CpG islands, complete sequence Length = 115256 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ctggggagactgagacaaga 373 |||||||||||||||||||| Sbjct: 19316 ctggggagactgagacaaga 19335
>emb|AL121952.18|HSDJ472M2 Human DNA sequence from clone RP3-472M2 on chromosome 6q25.1-26 Contains the 3' end of the gene for KIAA1116 and a ribosomal protein L17 (60S ribosomal protein L17) (RPL17)(rpL17) pseudogene, complete sequence Length = 107506 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaaga 373 |||||||||||||||||||| Sbjct: 99877 ctggggagactgagacaaga 99858
>emb|AL049545.6|HSDJ263J7 Human DNA sequence from clone RP1-263J7 on chromosome 6q14.3-15 Contains an 60S Ribosomal Protein L7 (RPL7) pseudogene and a RAB1, member RAS oncogene family (RAB1) pseudogene, complete sequence Length = 104081 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 atccttcccacagctcccac 282 |||||||||||||||||||| Sbjct: 34042 atccttcccacagctcccac 34061
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gatttttatggccatgttgg 212 |||||||||||||||||||| Sbjct: 323032 gatttttatggccatgttgg 323013
>gb|DQ431198.1| Homo sapiens interleukin 9 receptor (IL9Rps) pseudogene, complete sequence; and DNA-directed RNA polymerases III 12.5 kDa polypeptide (POLR3K), U11/U12 snRNP 25 kDa protein (C16orf33), RHBDG1 (C16orf8), DNA-3-methyladenine glycosylase (MPG), -14 gene protein (C16orf35), hemoglobin zeta subunit (HBZ), HBD (HBD), alpha globin (HBA2), alpha globin (HBA1), theta globin (HBQ1), and putative RNA-binding protein Luc7-like 1 (LUC7L) genes, complete cds Length = 214426 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaaga 373 |||||||||||||||||||| Sbjct: 200578 ctggggagactgagacaaga 200559
>emb|AJ511341.1|MDA511341 Mastotermes darwinensis mRNA for beta-1,4-endoglucanase (cel3 gene) Length = 1344 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acagctaaattacatattgg 68 |||||||||||||||||||| Sbjct: 1041 acagctaaattacatattgg 1060
>emb|AJ511340.1|MDA511340 Mastotermes darwinensis mRNA for beta-1,4-endoglucanase (cel2 gene) Length = 1350 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acagctaaattacatattgg 68 |||||||||||||||||||| Sbjct: 1047 acagctaaattacatattgg 1066
>emb|AJ511339.1|MDA511339 Mastotermes darwinensis mRNA for beta-1,4-endoglucanase (cel1 gene) Length = 1344 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acagctaaattacatattgg 68 |||||||||||||||||||| Sbjct: 1041 acagctaaattacatattgg 1060
>gb|BC052094.1| Mus musculus mRNA similar to SPPL2b (cDNA clone IMAGE:5695398) Length = 2561 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1152 accaggtagagtagtgcaggctgg 1129
>gb|AE006462.1| Homo sapiens 16p13.3 sequence section 1 of 8 Length = 258002 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaaga 373 |||||||||||||||||||| Sbjct: 220878 ctggggagactgagacaaga 220859
>gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180309 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gagggcaccaggtagagtagagca 351 |||| ||||||||||||||||||| Sbjct: 59510 gaggccaccaggtagagtagagca 59487
>dbj|AK022450.1| Homo sapiens cDNA FLJ12388 fis, clone MAMMA1002655, highly similar to Homo sapiens mRNA for ganglioside sialidase Length = 1617 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 aggctggggagactgagaca 370 |||||||||||||||||||| Sbjct: 119 aggctggggagactgagaca 100
>gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, complete sequence Length = 167944 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 47245 caaactatcttataaatatt 47264
>dbj|AK148109.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370019B05 product:Similar to SPPL2b (Fragment), full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1445 accaggtagagtagtgcaggctgg 1422
>ref|NM_175195.2| Mus musculus RIKEN cDNA 3110056O03 gene (3110056O03Rik), mRNA Length = 2885 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1497 accaggtagagtagtgcaggctgg 1474
>dbj|AK165324.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430012M22 product:similar to Signal peptide peptidase-like 2B (EC 3.4.99.-) (SPP-like 2B protein) (SPPL2b protein) (Intramembrane protease 4) (IMP4) (Presenilin-like protein 1) [Homo sapiens], full insert sequence Length = 3631 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1503 accaggtagagtagtgcaggctgg 1480
>dbj|AK166364.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830050N17 product:similar to Signal peptide peptidase-like 2B (EC 3.4.99.-) (SPP-like 2B protein) (SPPL2b protein) (Intramembrane protease 4) (IMP4) (Presenilin-like protein 1) [Homo sapiens], full insert sequence Length = 2820 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1429 accaggtagagtagtgcaggctgg 1406
>gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosome 10, complete sequence Length = 195951 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 116672 accaggtagagtagtgcaggctgg 116649
>dbj|AK170375.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630101I16 product:Similar to SPPL2b (Fragment) homolog [Mus musculus], full insert sequence Length = 2888 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1444 accaggtagagtagtgcaggctgg 1421
>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence Length = 189979 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 503 aagagagtacaagagctagaagca 526 |||| ||||||||||||||||||| Sbjct: 110654 aagacagtacaagagctagaagca 110631
>dbj|AK046804.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830011P16 product:hypothetical Protease associated (PA) domain containing protein, full insert sequence Length = 2885 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 1497 accaggtagagtagtgcaggctgg 1474
>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence Length = 177314 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 agactgagacaagatcccagctgc 383 |||||| ||||||||||||||||| Sbjct: 76374 agactgggacaagatcccagctgc 76397
>gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromosome 7, complete sequence Length = 182785 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 528 ccctgggatggccatgtctccaaggcca 555 |||||||| ||||||||||||| ||||| Sbjct: 171585 ccctgggagggccatgtctccagggcca 171612
>gb|AC019184.3| Homo sapiens BAC clone RP11-298E6 from 2, complete sequence Length = 194372 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ggaggttgtgatttttatgg 203 |||||||||||||||||||| Sbjct: 36977 ggaggttgtgatttttatgg 36996
>dbj|AK207842.1| Mus musculus cDNA, clone:Y2G0109E22, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000035597, based on BLAT search Length = 354 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 309 accaggtagagtagtgcaggctgg 286
>dbj|AK201100.1| Mus musculus cDNA, clone:Y1G0137A01, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000035597, based on BLAT search Length = 245 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accaggtagagtagagcaggctgg 357 |||||||||||||| ||||||||| Sbjct: 200 accaggtagagtagtgcaggctgg 177
>emb|Y18563.1|HSA018563 Homo sapiens mRNA for neuraminidase Length = 3540 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 aggctggggagactgagaca 370 |||||||||||||||||||| Sbjct: 896 aggctggggagactgagaca 877
>gb|AC147906.2| Xenopus tropicalis clone CH216-71H3, complete sequence Length = 147503 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccttacagctaaattaca 62 |||||||||||||||||||| Sbjct: 76144 ttccttacagctaaattaca 76163
>gb|AF182847.1|AF182847 Plasmodium chabaudi from Australia large subunit ribosomal RNA gene, partial sequence Length = 594 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 307 caaactatcttataaatatt 326
>gb|AF182846.1|AF182846 Plasmodium malariae from Burma large subunit ribosomal RNA gene, partial sequence Length = 594 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 307 caaactatcttataaatatt 326
>gb|AC115762.9| Mus musculus chromosome 8, clone RP23-64E18, complete sequence Length = 222394 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gcaaatgagccttctcgttc 249 |||||||||||||||||||| Sbjct: 20819 gcaaatgagccttctcgttc 20838
>emb|AL137129.4|CNS01DWE Human chromosome 14 DNA sequence BAC R-618G20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188107 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 gagggcaccaggtagagtagagca 351 |||| ||||||||||||||||||| Sbjct: 12946 gaggccaccaggtagagtagagca 12969
>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178484 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gagggcaccaggtagagtagagca 351 |||| ||||||||||||||||||| Sbjct: 48221 gaggccaccaggtagagtagagca 48198
>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227467 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tgttggatcatctcagactt 226 |||||||||||||||||||| Sbjct: 200494 tgttggatcatctcagactt 200475
>dbj|AP001992.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-147I3, complete sequence Length = 169454 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 aggctggggagactgagaca 370 |||||||||||||||||||| Sbjct: 137340 aggctggggagactgagaca 137321
>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence Length = 179665 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 503 aagagagtacaagagctagaagca 526 |||| ||||||||||||||||||| Sbjct: 28603 aagacagtacaagagctagaagca 28580
>gb|AC005244.1|AC005244 Homo sapiens chromosome 17, clone hRPK.471_L_13, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 gtggtggatccttcccacagctcc 279 |||||||| ||||||||||||||| Sbjct: 56105 gtggtggacccttcccacagctcc 56082
>emb|CT033762.9| Mouse DNA sequence from clone RP24-144L17 on chromosome 14, complete sequence Length = 114799 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 acaaggtaaaaggcttagattact 106 ||||||| |||||||||||||||| Sbjct: 45298 acaaggtcaaaggcttagattact 45275
>gb|U79732.1|PBU79732 Plasmodium berghei extrachromosomal plastid PB-2, tRNA-Pro, tRNA-Glu, tRNA-Lys, tRNA-Asp, tRNA-Ser, tRNA-Tyr, tRNA-Met, tRNA-Leu, tRNA-Cys, and tRNA-His genes, complete sequence, rps4 gene, complete cds, tRNA-Thr gene, complete sequence, and large subunit ribosomal RNA gene, partial sequence Length = 2621 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 2431 caaactatcttataaatatt 2450
>gb|U79731.1|PBU79731 Plasmodium berghei extrachromosomal plastid PB-1, ORF470 gene, partial cds, tRNA-Thr, large subunit ribosomal RNA, tRNA-Met, tRNA-Arg, tRNA-Val, tRNA-Arg, tRNA-Leu, tRNA-Asn, tRNA-Ala, and small subunit ribosomal RNA genes, complete sequences Length = 5849 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaactatcttataaatatt 131 |||||||||||||||||||| Sbjct: 1453 caaactatcttataaatatt 1472
>emb|Z69890.1|HSRJ14 Human DNA sequence from clone XX-CRJ14 on chromosome 16, complete sequence Length = 28265 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ctggggagactgagacaaga 373 |||||||||||||||||||| Sbjct: 25723 ctggggagactgagacaaga 25704
>gb|AC131232.12| Mus musculus chromosome 8, clone RP24-376E20, complete sequence Length = 158672 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gcaaatgagccttctcgttc 249 |||||||||||||||||||| Sbjct: 121325 gcaaatgagccttctcgttc 121344
>dbj|AB024735.1| Mastotermes darwiniensis mRNA for salivary cellulase, partial cds Length = 117 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acagctaaattacatattgg 68 |||||||||||||||||||| Sbjct: 88 acagctaaattacatattgg 107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,942,660 Number of Sequences: 3902068 Number of extensions: 5942660 Number of successful extensions: 122731 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122412 Number of HSP's gapped (non-prelim): 319 length of query: 666 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 643 effective length of database: 17,143,297,704 effective search space: 11023140423672 effective search space used: 11023140423672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)