| Clone Name | rbags29l13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA sequence Length = 2748 Score = 878 bits (443), Expect = 0.0 Identities = 561/596 (94%), Gaps = 12/596 (2%) Strand = Plus / Minus Query: 67 gaaacaacaataaacgagcatacatggacatttcaacatattggacttctagagcagttg 126 ||||||| || ||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 776 gaaacaaaaagaaacgagcatacatggacatttcaacatattggacttctggaacagttg 717 Query: 127 aa-tctcgcaagaaatctttgtattgataactcattcaaagcagcgccataaatccgaca 185 || ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct: 716 aactctggcaagaaatctttgtattgataattcattcaaagcagcgccataaacccgaca 657 Query: 186 acagagaaatttgataccattacacattagtctatgcagcctggatcactccttag---c 242 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 656 acagggaaatttgataccattacacattagtctatgcagcctggatcactccttagtagc 597 Query: 243 atcaagtgtcggcaagagactatttactgcaacctgtgaagcttcaa---tcccacctta 299 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 596 atcaagtgtcggcaagagactatttactgcaacctgtgaagcttcaacaatcccacctta 537 Query: 300 gcatcaaaacatctggtaagagcatatttttactgttgtggtaggttgctgctgcc---a 356 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| | Sbjct: 536 gcatcaaaacatctggtaagagcgtattt--actgcggtggtaggttgctgctgccgcca 479 Query: 357 ccacccaatcccgctttctgtcccaattctgcgagttgctgaataaattccacaccattg 416 ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 478 ccacctaatcccgctttctgtcccagttctgcgagctgctgaataaattccaccccattg 419 Query: 417 agaatctctgttgctccatatatgacatgctttgaaggctgtgagcgttgccctagctca 476 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 418 agaatctccgttgctccatatatgacatgctttgaaggctgtgagcgctgccctagctca 359 Query: 477 actaagctcctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttctctg 536 ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 358 actaagctcctatactcgatgtaatttccaccaccaatcatgaaaacaatggcttctctg 299 Query: 537 aagggtcctctaaactgcccaccagttcctgatctaggggcccgtgggtcgaacaatagg 596 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 298 aagggtcctctaaactgcccaccagttcctgatctaggggcccgtggatcgaacagtagg 239 Query: 597 tagttgtccacctctgggtttggtttcccttccatgagggcttcaacagtcctagt 652 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 238 tagttgtccacctctgggtttggtttcccttccatgagggcttcgacagtcctagt 183
>gb|AY105429.1| Zea mays PCO143975 mRNA sequence Length = 776 Score = 301 bits (152), Expect = 2e-78 Identities = 281/324 (86%) Strand = Plus / Minus Query: 337 gtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgct 396 |||||| ||||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct: 462 gtggtatgttgctgctgccaccacccaaccctgctttctgccccaattctgccagttggt 403 Query: 397 gaataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggct 456 ||||||| || | ||| | ||||| |||||||| |||||||| ||||| || ||||||| Sbjct: 402 gaataaactcggccccactaagaatttctgttgcaccatatataacatgtttggaaggct 343 Query: 457 gtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatca 516 ||||||||||| |||||| | |||||| | ||||||||||||||||| ||||| |||| Sbjct: 342 gtgagcgttgctttagctctatcaagctcttgtactcaatgtaatttccaccaccgatca 283 Query: 517 tgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctagggg 576 ||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||| | Sbjct: 282 tgaaaacaacggcttctctgaagggtcctttaaactgcccactagttcctgacctaggag 223 Query: 577 cccgtgggtcgaacaataggtagttgtccacctctgggtttggtttcccttccatgaggg 636 ||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| || | Sbjct: 222 cccgtggatcaaacaaaaggtagtcatccacctctgggtttggtttcccttccataagag 163 Query: 637 cttcaacagtcctagtcagggcca 660 ||||||| || || |||| ||||| Sbjct: 162 cttcaactgttcttgtcaaggcca 139
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 246 bits (124), Expect = 8e-62 Identities = 259/304 (85%) Strand = Plus / Plus Query: 328 tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 387 ||||||| |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| Sbjct: 23353153 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 23353212 Query: 388 cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 447 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct: 23353213 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 23353272 Query: 448 ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 507 | | || |||||| |||||| |||||| |||||||| || |||||||||||||| | Sbjct: 23353273 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 23353332 Query: 508 caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 567 ||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| Sbjct: 23353333 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 23353392 Query: 568 atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 627 || ||||||||||||| || || | || ||||||||| || || || ||||||||||| | Sbjct: 23353393 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccct 23353452 Query: 628 ccat 631 |||| Sbjct: 23353453 ccat 23353456
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 246 bits (124), Expect = 8e-62 Identities = 259/304 (85%) Strand = Plus / Plus Query: 328 tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 387 ||||||| |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| Sbjct: 23346181 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 23346240 Query: 388 cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 447 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct: 23346241 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 23346300 Query: 448 ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 507 | | || |||||| |||||| |||||| |||||||| || |||||||||||||| | Sbjct: 23346301 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 23346360 Query: 508 caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 567 ||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| Sbjct: 23346361 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 23346420 Query: 568 atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 627 || ||||||||||||| || || | || ||||||||| || || || ||||||||||| | Sbjct: 23346421 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccct 23346480 Query: 628 ccat 631 |||| Sbjct: 23346481 ccat 23346484
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 246 bits (124), Expect = 8e-62 Identities = 259/304 (85%) Strand = Plus / Plus Query: 328 tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 387 ||||||| |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| Sbjct: 35809 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 35868 Query: 388 cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 447 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct: 35869 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 35928 Query: 448 ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 507 | | || |||||| |||||| |||||| |||||||| || |||||||||||||| | Sbjct: 35929 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 35988 Query: 508 caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 567 ||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| Sbjct: 35989 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 36048 Query: 568 atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 627 || ||||||||||||| || || | || ||||||||| || || || ||||||||||| | Sbjct: 36049 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccct 36108 Query: 628 ccat 631 |||| Sbjct: 36109 ccat 36112
>dbj|AK072419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A08, full insert sequence Length = 1588 Score = 246 bits (124), Expect = 8e-62 Identities = 259/304 (85%) Strand = Plus / Minus Query: 328 tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 387 ||||||| |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| Sbjct: 1402 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 1343 Query: 388 cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 447 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct: 1342 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 1283 Query: 448 ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 507 | | || |||||| |||||| |||||| |||||||| || |||||||||||||| | Sbjct: 1282 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 1223 Query: 508 caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 567 ||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| Sbjct: 1222 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 1163 Query: 568 atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 627 || ||||||||||||| || || | || ||||||||| || || || ||||||||||| | Sbjct: 1162 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccct 1103 Query: 628 ccat 631 |||| Sbjct: 1102 ccat 1099
>dbj|AK071474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B21, full insert sequence Length = 2066 Score = 246 bits (124), Expect = 8e-62 Identities = 259/304 (85%) Strand = Plus / Minus Query: 328 tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 387 ||||||| |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| Sbjct: 1942 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 1883 Query: 388 cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 447 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct: 1882 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 1823 Query: 448 ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 507 | | || |||||| |||||| |||||| |||||||| || |||||||||||||| | Sbjct: 1822 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 1763 Query: 508 caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 567 ||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| Sbjct: 1762 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 1703 Query: 568 atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 627 || ||||||||||||| || || | || ||||||||| || || || ||||||||||| | Sbjct: 1702 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccct 1643 Query: 628 ccat 631 |||| Sbjct: 1642 ccat 1639
>ref|XM_463196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1872 Score = 244 bits (123), Expect = 3e-61 Identities = 252/295 (85%) Strand = Plus / Minus Query: 337 gtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgct 396 |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| |||||||| Sbjct: 1864 gtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctgagagttgct 1805 Query: 397 gaataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggct 456 ||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| | || || Sbjct: 1804 gaataaactccaccccattaagaatttcagttgctccatatatgacttgcttggtagtct 1745 Query: 457 gtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatca 516 |||| |||||| |||||| |||||||| || |||||||||||||| |||||||||| Sbjct: 1744 gtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccaccaccaatca 1685 Query: 517 tgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctagggg 576 |||||||||| || ||||||||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 1684 tgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctgatttagggg 1625 Query: 577 cccgtgggtcgaacaataggtagttgtccacctctgggtttggtttcccttccat 631 ||||||| || || | || ||||||||| || || || ||||||||||| ||||| Sbjct: 1624 cccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttcccctccat 1570
>gb|BT024046.1| Zea mays clone EL01N0431D03 mRNA sequence Length = 2180 Score = 242 bits (122), Expect = 1e-60 Identities = 273/322 (84%), Gaps = 1/322 (0%) Strand = Plus / Minus Query: 339 ggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgctga 398 |||| ||||||| ||||||||||||| || | |||||| ||||||||||| || || || Sbjct: 1802 ggtatgttgctggtgccaccacccaaccctggtttctgccccaattctgccaggtgggga 1743 Query: 399 ataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggctgt 458 ||||| || | ||| | ||||| |||| ||| |||||||| ||||| || ||||| ||| Sbjct: 1742 ataaactcggccccactaagaatttctggtgcaccatatataacatgtttggaagggtgt 1683 Query: 459 gagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatcatg 518 ||||||||| |||||| | | ||||| | ||||||||||||||||| ||||| |||||| Sbjct: 1682 gagcgttgctttagctcta-tcagctcttgtactcaatgtaatttccaccaccgatcatg 1624 Query: 519 aaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctaggggcc 578 ||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||| ||| Sbjct: 1623 aaaacaacggcttctctgaagggtcctttaaactgcccactagttcctgacctaggagcc 1564 Query: 579 cgtgggtcgaacaataggtagttgtccacctctgggtttggtttcccttccatgagggct 638 ||||| || ||||| ||||||| ||||||||||||||||||||||||||||| || ||| Sbjct: 1563 cgtggatcaaacaaaaggtagtcatccacctctgggtttggtttcccttccataagagct 1504 Query: 639 tcaacagtcctagtcagggcca 660 ||||| || || |||| ||||| Sbjct: 1503 tcaactgttcttgtcaaggcca 1482
>emb|BX469888.5| Zebrafish DNA sequence from clone CH211-73C20 in linkage group 14, complete sequence Length = 188432 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 480 aagctcctatactcaatgtaatt 502 ||||||||||||||||||||||| Sbjct: 17998 aagctcctatactcaatgtaatt 18020
>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14, complete sequence Length = 167320 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 480 aagctcctatactcaatgtaatt 502 ||||||||||||||||||||||| Sbjct: 22407 aagctcctatactcaatgtaatt 22385
>emb|CR387921.7| Zebrafish DNA sequence from clone CH211-84M6 in linkage group 17, complete sequence Length = 187568 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 83 agcatacatggacatttcaaca 104 |||||||||||||||||||||| Sbjct: 142762 agcatacatggacatttcaaca 142741
>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence Length = 99012 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 517 tgaaaacaattgcttctctga 537 ||||||||||||||||||||| Sbjct: 53544 tgaaaacaattgcttctctga 53524
>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete sequence Length = 201815 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 atcccaccttagcatcaaaac 309 ||||||||||||||||||||| Sbjct: 183832 atcccaccttagcatcaaaac 183852
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 agcagttgaatctcgcaagaa 139 ||||||||||||||||||||| Sbjct: 29207919 agcagttgaatctcgcaagaa 29207899
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1215_E11 Length = 105301 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 agcagttgaatctcgcaagaa 139 ||||||||||||||||||||| Sbjct: 75206 agcagttgaatctcgcaagaa 75186
>emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 in linkage group 4, complete sequence Length = 116689 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 taagagcatatttttactgtt 336 ||||||||||||||||||||| Sbjct: 53858 taagagcatatttttactgtt 53838
>ref|NM_119323.1| Arabidopsis thaliana unknown protein AT4G31740 mRNA, complete cds Length = 516 Score = 40.1 bits (20), Expect = 9.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 486 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 533 ||||| |||||||| || || |||||||||||||| || || |||||| Sbjct: 386 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 339
>ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-CoA synthetase subunit beta (DDB0231357), partial mRNA Length = 1338 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 attgataactcattcaaagcagcg 171 ||||||||||| |||||||||||| Sbjct: 1145 attgataactccttcaaagcagcg 1122
>gb|AY735658.1| Arabidopsis thaliana hypothetical protein AT4G31740 mRNA, complete cds Length = 765 Score = 40.1 bits (20), Expect = 9.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 486 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 533 ||||| |||||||| || || |||||||||||||| || || |||||| Sbjct: 458 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 411
>gb|AY935268.1| Antirrhinum majus farinelli (FAR) gene, complete sequence Length = 54307 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cacaccattgagaatctctg 426 |||||||||||||||||||| Sbjct: 20771 cacaccattgagaatctctg 20752
>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene, the FBP2 gene for Fructose-1,6-bisphosphatase 2, a gene for a putative novel protein and one CpG island, complete sequence Length = 170532 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 550 actgcccaccagttcctgatctag 573 |||||||||||||||||| ||||| Sbjct: 37008 actgcccaccagttcctgctctag 37031
>emb|AL160257.12| Human DNA sequence from clone RP11-77O2 on chromosome 13, complete sequence Length = 62107 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 acatctggtaagagcatatt 327 |||||||||||||||||||| Sbjct: 41068 acatctggtaagagcatatt 41087
>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the gene for a novel protein similar to smoothelin Smtn, three novel genes, the Mybbp1a gene for MYB binding protein (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the 5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) and four CpG islands, complete sequence Length = 258521 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gttgctgctgccaccaccca 363 |||||||||||||||||||| Sbjct: 251375 gttgctgctgccaccaccca 251356
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 40.1 bits (20), Expect = 9.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 486 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 533 ||||| |||||||| || || |||||||||||||| || || |||||| Sbjct: 130163 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 130116
>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project) Length = 90902 Score = 40.1 bits (20), Expect = 9.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 486 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 533 ||||| |||||||| || || |||||||||||||| || || |||||| Sbjct: 23108 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 23155
>gb|AC114777.4| Homo sapiens BAC clone RP11-496D24 from 4, complete sequence Length = 52417 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttgctgctgccaccacccaa 364 |||||||||||||||||||| Sbjct: 35194 ttgctgctgccaccacccaa 35175
>gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence Length = 29143 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 attgataactcattcaaagcagcg 171 ||||||||||| |||||||||||| Sbjct: 19246 attgataactccttcaaagcagcg 19223
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ttgctgaataaattccacac 411 |||||||||||||||||||| Sbjct: 4726152 ttgctgaataaattccacac 4726133
>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete sequence Length = 163726 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccacccaatcccgctttctg 376 |||||||||||||||||||| Sbjct: 143792 ccacccaatcccgctttctg 143773
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 ccttccatgagggcttcaac 643 |||||||||||||||||||| Sbjct: 3429453 ccttccatgagggcttcaac 3429472
>gb|AF081854.1|AF081854 Nocomis biguttatus 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence, mitochondrial genes for mitochondrial RNAs Length = 1895 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 ctcctatactcaatgtaatt 502 |||||||||||||||||||| Sbjct: 1166 ctcctatactcaatgtaatt 1147
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tgtattgataactcattcaa 164 |||||||||||||||||||| Sbjct: 241689 tgtattgataactcattcaa 241670
>dbj|AP006644.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT06I23, TM0253, complete sequence Length = 85813 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 atatatgacatgctttgaag 453 |||||||||||||||||||| Sbjct: 80610 atatatgacatgctttgaag 80629
>gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, complete sequence Length = 220008 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 aaatctttgtattgataactcatt 161 ||||||||||||| |||||||||| Sbjct: 62554 aaatctttgtatttataactcatt 62577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,614,799 Number of Sequences: 3902068 Number of extensions: 5614799 Number of successful extensions: 103811 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103585 Number of HSP's gapped (non-prelim): 213 length of query: 660 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 637 effective length of database: 17,143,297,704 effective search space: 10920280637448 effective search space used: 10920280637448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)