ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29l10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 242 bits (122), Expect = 1e-60 Identities = 302/362 (83%) Strand = Plus / Minus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 1033 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 974 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 973 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 914 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 509 |||||||| | | ||| ||||||||||| ||||| ||||| ||| | ||||||||| Sbjct: 913 ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 854 Query: 510 agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 569 |||||||| |||||| ||||| ||||||||||||| |||||| || |||||||||| | Sbjct: 853 agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 794 Query: 570 actccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcacttgatg 629 || |||||| || || || |||| |||||| |||||||||| |||||||||||||| Sbjct: 793 acaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcacttgaca 734 Query: 630 tgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtcggtc 689 || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||||||| Sbjct: 733 tgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtcggtc 674 Query: 690 ag 691 || Sbjct: 673 ag 672
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 242 bits (122), Expect = 1e-60 Identities = 302/362 (83%) Strand = Plus / Minus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 1038 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 979 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 978 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 919 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 509 |||||||| | | ||| ||||||||||| ||||| ||||| ||| | ||||||||| Sbjct: 918 ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 859 Query: 510 agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 569 |||||||| |||||| ||||| ||||||||||||| |||||| || |||||||||| | Sbjct: 858 agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 799 Query: 570 actccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcacttgatg 629 || |||||| || || || |||| |||||| |||||||||| |||||||||||||| Sbjct: 798 acaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcacttgaca 739 Query: 630 tgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtcggtc 689 || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||||||| Sbjct: 738 tgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtcggtc 679 Query: 690 ag 691 || Sbjct: 678 ag 677
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 174 bits (88), Expect = 3e-40 Identities = 184/216 (85%) Strand = Plus / Minus Query: 473 gcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttgagatggtgg 532 ||||||||| || ||||| |||||||| |||||||||||||| || | |||| |||||| Sbjct: 248 gcaatcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgg 189 Query: 533 gacggtgtggaacaggtcacccgcgacatagttaatgactccatcagctggggctttttc 592 |||||| ||||| |||||||| ||||||||||||| || |||||| |||| |||| || Sbjct: 188 gacggtatggaagaggtcaccagcgacatagttaacaacaccatcacttgggactttctc 129 Query: 593 gaccacctttggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggc 652 || |||||||||||||||||||||| |||||||||| ||||| | |||||||||| ||| Sbjct: 128 gatcacctttggaaggtccaacacattgcacttgatatgcgggaaggccttgacgatggc 69 Query: 653 cctcgctgtcgtaccatcgccgccgcagcagtcggt 688 ||| || ||||| ||||| || || ||||||||||| Sbjct: 68 ccttgcggtcgtcccatcaccaccacagcagtcggt 33
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 139 bits (70), Expect = 2e-29 Identities = 157/186 (84%) Strand = Plus / Minus Query: 506 cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 565 |||||||||||| |||||| ||||| ||||||||||||| |||||| || |||||||| Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 119638 Query: 566 aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 625 || ||| |||||| || || || |||| |||||| |||||||||| |||||||||||| Sbjct: 119637 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 119578 Query: 626 gatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtc 685 || || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||| Sbjct: 119577 gacatgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtc 119518 Query: 686 ggtcag 691 |||||| Sbjct: 119517 ggtcag 119512 Score = 121 bits (61), Expect = 4e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 123040 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 122981 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 122980 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 122921 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactcca 490 |||||||| | | ||| ||||||||||| ||||| ||||| Sbjct: 122920 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 122880 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 309 cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 368 ||||||| ||||| || ||||||||||||||||| ||||||| ||| || ||||| ||| Sbjct: 64375 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 64316 Query: 369 attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 428 ||||| ||||| || || ||| |||||| || ||||||| || | ||| || |||||| Sbjct: 64315 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 64256 Query: 429 tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 475 | || | |||||| |||||| ||||||| |||||||| |||||||| Sbjct: 64255 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 64209 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 602 tggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgt 661 ||||||||||| ||| ||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 63902 tggaaggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatggccctcgccgt 63843 Query: 662 cgtaccatcgccgccgcagcagtcggtcag 691 | || | || |||||||||||||||||| Sbjct: 63842 ggcgccgtggcggccgcagcagtcggtcag 63813
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 139 bits (70), Expect = 2e-29 Identities = 157/186 (84%) Strand = Plus / Minus Query: 506 cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 565 |||||||||||| |||||| ||||| ||||||||||||| |||||| || |||||||| Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 5387 Query: 566 aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 625 || ||| |||||| || || || |||| |||||| |||||||||| |||||||||||| Sbjct: 5386 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 5327 Query: 626 gatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtc 685 || || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||| Sbjct: 5326 gacatgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtc 5267 Query: 686 ggtcag 691 |||||| Sbjct: 5266 ggtcag 5261 Score = 121 bits (61), Expect = 4e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 8789 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 8730 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 8729 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 8670 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactcca 490 |||||||| | | ||| ||||||||||| ||||| ||||| Sbjct: 8669 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 8629 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 603 ggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgtc 662 |||||||||| |||||||||||||| ||| || | |||| ||||| || |||||| ||| Sbjct: 60606 ggaaggtccagcacagtgcacttgacgtgtgggaaggcctcgacgatggtcctcgccgtc 60547 Query: 663 gtaccatcgccgccgcagcagtcggtcagggagtcaagcccct 705 | || |||||||||| |||||| ||||| || || ||||||| Sbjct: 60546 gcgccgtcgccgccgccgcagtctgtcagcgactccagcccct 60504 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Minus Query: 459 gctaggattttcacgcaatcctcatcactccaa 491 |||||||||||||||||||||| ||||||||| Sbjct: 62050 gctaggattttcacgcaatcctggtcactccaa 62018
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 139 bits (70), Expect = 2e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 506 cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 565 |||||||||||| |||||| ||||| ||||||||||||| |||||| || |||||||| Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11494150 Query: 566 aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 625 || ||| |||||| || || || |||| |||||| |||||||||| |||||||||||| Sbjct: 11494151 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11494210 Query: 626 gatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtc 685 || || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||| Sbjct: 11494211 gacatgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtc 11494270 Query: 686 ggtcag 691 |||||| Sbjct: 11494271 ggtcag 11494276 Score = 121 bits (61), Expect = 4e-24 Identities = 136/161 (84%) Strand = Plus / Plus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 11490748 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11490807 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 11490808 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11490867 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactcca 490 |||||||| | | ||| ||||||||||| ||||| ||||| Sbjct: 11490868 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11490908 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Plus Query: 309 cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 368 ||||||| ||||| || ||||||||||||||||| ||||||| ||| || ||||| ||| Sbjct: 11549413 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11549472 Query: 369 attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 428 ||||| ||||| || || ||| |||||| || ||||||| || | ||| || |||||| Sbjct: 11549473 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11549532 Query: 429 tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 475 | || | |||||| |||||| ||||||| |||||||| |||||||| Sbjct: 11549533 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11549579 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 602 tggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgt 661 ||||||||||| ||| ||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 11549886 tggaaggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatggccctcgccgt 11549945 Query: 662 cgtaccatcgccgccgcagcagtcggtcag 691 | || | || |||||||||||||||||| Sbjct: 11549946 ggcgccgtggcggccgcagcagtcggtcag 11549975 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 603 ggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgtc 662 |||||||||| |||||||||||||| ||| || | |||| ||||| || |||||| ||| Sbjct: 11438931 ggaaggtccagcacagtgcacttgacgtgtgggaaggcctcgacgatggtcctcgccgtc 11438990 Query: 663 gtaccatcgccgccgcagcagtcggtcagggagtcaagcccct 705 | || |||||||||| |||||| ||||| || || ||||||| Sbjct: 11438991 gcgccgtcgccgccgccgcagtctgtcagcgactccagcccct 11439033 Score = 58.0 bits (29), Expect = 5e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 591 tcgaccacctttggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagg 650 |||| |||||| || ||||||| ||| ||||||||||||||||| | ||| | ||| | Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 7138354 Query: 651 gccctcgctgtcgtaccatcgccgccgcagcagtcggtcag 691 |||||||| |||| || ||||||||| |||||||||||| Sbjct: 7138355 gccctcgccgtcgcgccgtcgccgccggcgcagtcggtcag 7138395 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Plus Query: 459 gctaggattttcacgcaatcctcatcactccaa 491 |||||||||||||||||||||| ||||||||| Sbjct: 11437487 gctaggattttcacgcaatcctggtcactccaa 11437519 Score = 48.1 bits (24), Expect = 0.044 Identities = 60/72 (83%) Strand = Plus / Plus Query: 620 gcacttgatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgca 679 |||||||| |||||| | |||| | ||| ||||||||| | ||| || |||||||||| Sbjct: 11302391 gcacttgacgtgcgggaaggcctcggcgatggccctcgccgccgtgccgtcgccgccgcc 11302450 Query: 680 gcagtcggtcag 691 |||||||||||| Sbjct: 11302451 gcagtcggtcag 11302462 Score = 48.1 bits (24), Expect = 0.044 Identities = 48/56 (85%) Strand = Plus / Plus Query: 207 tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 262 ||||| |||||||| ||||| | || | |||||||||||||||||| |||||||| Sbjct: 11294528 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583 Score = 46.1 bits (23), Expect = 0.17 Identities = 50/59 (84%) Strand = Plus / Plus Query: 210 gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 268 ||||||||||| | ||| ||| ||||||| |||||||||||| ||||||||| |||| Sbjct: 11353889 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11353947 Score = 44.1 bits (22), Expect = 0.69 Identities = 25/26 (96%) Strand = Plus / Plus Query: 666 ccatcgccgccgcagcagtcggtcag 691 ||||||||||||| |||||||||||| Sbjct: 11331033 ccatcgccgccgcggcagtcggtcag 11331058
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 139 bits (70), Expect = 2e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 506 cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 565 |||||||||||| |||||| ||||| ||||||||||||| |||||| || |||||||| Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11573339 Query: 566 aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 625 || ||| |||||| || || || |||| |||||| |||||||||| |||||||||||| Sbjct: 11573340 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11573399 Query: 626 gatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgcagcagtc 685 || || || || |||||| ||| ||||||||| ||||| || ||||||||||||||||| Sbjct: 11573400 gacatgagggtaggccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagtc 11573459 Query: 686 ggtcag 691 |||||| Sbjct: 11573460 ggtcag 11573465 Score = 121 bits (61), Expect = 4e-24 Identities = 136/161 (84%) Strand = Plus / Plus Query: 330 accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 389 |||| ||| ||||||||||||| || |||||||||||||||||||| |||| |||||| Sbjct: 11569937 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11569996 Query: 390 ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 449 ||||||| ||||||||||| || ||||| || |||||||| || | |||||||||||| Sbjct: 11569997 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11570056 Query: 450 ctgcactgggctaggattttcacgcaatcctcatcactcca 490 |||||||| | | ||| ||||||||||| ||||| ||||| Sbjct: 11570057 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11570097 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Plus Query: 309 cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 368 ||||||| ||||| || ||||||||||||||||| ||||||| ||| || ||||| ||| Sbjct: 11628602 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11628661 Query: 369 attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 428 ||||| ||||| || || ||| |||||| || ||||||| || | ||| || |||||| Sbjct: 11628662 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11628721 Query: 429 tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 475 | || | |||||| |||||| ||||||| |||||||| |||||||| Sbjct: 11628722 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11628768 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 602 tggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgt 661 ||||||||||| ||| ||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 11629075 tggaaggtccagcaccgtgcacttgatgtgcgggtacgccttgacgatggccctcgccgt 11629134 Query: 662 cgtaccatcgccgccgcagcagtcggtcag 691 | || | || |||||||||||||||||| Sbjct: 11629135 ggcgccgtggcggccgcagcagtcggtcag 11629164 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 603 ggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagggccctcgctgtc 662 |||||||||| |||||||||||||| ||| || | |||| ||||| || |||||| ||| Sbjct: 11518120 ggaaggtccagcacagtgcacttgacgtgtgggaaggcctcgacgatggtcctcgccgtc 11518179 Query: 663 gtaccatcgccgccgcagcagtcggtcagggagtcaagcccct 705 | || |||||||||| |||||| ||||| || || ||||||| Sbjct: 11518180 gcgccgtcgccgccgccgcagtctgtcagcgactccagcccct 11518222 Score = 58.0 bits (29), Expect = 5e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 591 tcgaccacctttggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagg 650 |||| |||||| || ||||||| ||| ||||||||||||||||| | ||| | ||| | Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 7204325 Query: 651 gccctcgctgtcgtaccatcgccgccgcagcagtcggtcag 691 |||||||| |||| || ||||||||| |||||||||||| Sbjct: 7204326 gccctcgccgtcgcgccgtcgccgccggcgcagtcggtcag 7204366 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Plus Query: 459 gctaggattttcacgcaatcctcatcactccaa 491 |||||||||||||||||||||| ||||||||| Sbjct: 11516676 gctaggattttcacgcaatcctggtcactccaa 11516708 Score = 48.1 bits (24), Expect = 0.044 Identities = 60/72 (83%) Strand = Plus / Plus Query: 620 gcacttgatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgca 679 |||||||| |||||| | |||| | ||| ||||||||| | ||| || |||||||||| Sbjct: 11381580 gcacttgacgtgcgggaaggcctcggcgatggccctcgccgccgtgccgtcgccgccgcc 11381639 Query: 680 gcagtcggtcag 691 |||||||||||| Sbjct: 11381640 gcagtcggtcag 11381651 Score = 48.1 bits (24), Expect = 0.044 Identities = 48/56 (85%) Strand = Plus / Plus Query: 207 tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 262 ||||| |||||||| ||||| | || | |||||||||||||||||| |||||||| Sbjct: 11373717 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772 Score = 46.1 bits (23), Expect = 0.17 Identities = 50/59 (84%) Strand = Plus / Plus Query: 210 gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 268 ||||||||||| | ||| ||| ||||||| |||||||||||| ||||||||| |||| Sbjct: 11433078 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11433136 Score = 44.1 bits (22), Expect = 0.69 Identities = 25/26 (96%) Strand = Plus / Plus Query: 666 ccatcgccgccgcagcagtcggtcag 691 ||||||||||||| |||||||||||| Sbjct: 11410222 ccatcgccgccgcggcagtcggtcag 11410247
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 73.8 bits (37), Expect = 8e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 465 attttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttga 524 |||||||| |||||||| |||||||| ||| ||||||||||||||||| || ||||| Sbjct: 915 attttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttga 856 Query: 525 gatggtgggacggtgtggaacaggtcacccgcgacatagtt 565 | ||||||| || | |||||| ||||||||| |||||||| Sbjct: 855 gcaggtgggatggcgcggaacatgtcacccgctacatagtt 815 Score = 44.1 bits (22), Expect = 0.69 Identities = 25/26 (96%) Strand = Plus / Minus Query: 666 ccatcgccgccgcagcagtcggtcag 691 ||||||||||||| |||||||||||| Sbjct: 714 ccatcgccgccgcggcagtcggtcag 689
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 58.0 bits (29), Expect = 5e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 591 tcgaccacctttggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagg 650 |||| |||||| || ||||||| ||| ||||||||||||||||| | ||| | ||| | Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 44201 Query: 651 gccctcgctgtcgtaccatcgccgccgcagcagtcggtcag 691 |||||||| |||| || ||||||||| |||||||||||| Sbjct: 44200 gccctcgccgtcgcgccgtcgccgccggcgcagtcggtcag 44160
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 58.0 bits (29), Expect = 5e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 591 tcgaccacctttggaaggtccaacacagtgcacttgatgtgcggataagccttgacgagg 650 |||| |||||| || ||||||| ||| ||||||||||||||||| | ||| | ||| | Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaatgccgcggcgatg 51574 Query: 651 gccctcgctgtcgtaccatcgccgccgcagcagtcggtcag 691 |||||||| |||| || ||||||||| |||||||||||| Sbjct: 51575 gccctcgccgtcgcgccgtcgccgccggcgcagtcggtcag 51615
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 324 gtgttcaccatcatgagcatatccatcaggagttgggc 361 |||||||||||||||||||| |||||||| || ||||| Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggc 954
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 48.1 bits (24), Expect = 0.044 Identities = 60/72 (83%) Strand = Plus / Plus Query: 620 gcacttgatgtgcggataagccttgacgagggccctcgctgtcgtaccatcgccgccgca 679 |||||||| |||||| | |||| | ||| ||||||||| | ||| || |||||||||| Sbjct: 88749 gcacttgacgtgcgggaaggcctcggcgatggccctcgccgccgtgccgtcgccgccgcc 88808 Query: 680 gcagtcggtcag 691 |||||||||||| Sbjct: 88809 gcagtcggtcag 88820 Score = 48.1 bits (24), Expect = 0.044 Identities = 48/56 (85%) Strand = Plus / Plus Query: 207 tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 262 ||||| |||||||| ||||| | || | |||||||||||||||||| |||||||| Sbjct: 80886 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941 Score = 46.1 bits (23), Expect = 0.17 Identities = 50/59 (84%) Strand = Plus / Plus Query: 210 gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 268 ||||||||||| | ||| ||| ||||||| |||||||||||| ||||||||| |||| Sbjct: 140247 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 140305 Score = 44.1 bits (22), Expect = 0.69 Identities = 25/26 (96%) Strand = Plus / Plus Query: 666 ccatcgccgccgcagcagtcggtcag 691 ||||||||||||| |||||||||||| Sbjct: 117391 ccatcgccgccgcggcagtcggtcag 117416
>ref|XM_416865.1| PREDICTED: Gallus gallus similar to short stature homeobox isoform a; growth control factor, X-linked; pseudoautosomal homeobox-containing osteogenic gene (LOC418669), mRNA Length = 2100 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 417 tttcccccctcctcccgcggagg 439 ||||||||||||||||||||||| Sbjct: 534 tttcccccctcctcccgcggagg 556
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 44.1 bits (22), Expect = 0.69 Identities = 40/46 (86%) Strand = Plus / Minus Query: 468 ttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagca 513 |||| ||| ||||||||||||||| |||||| |||| |||||||| Sbjct: 821 ttcatgcagtcctcatcactccaatcgtgtaggacaaacttgagca 776
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 44.1 bits (22), Expect = 0.69 Identities = 43/50 (86%) Strand = Plus / Minus Query: 501 acaagcttgagcatcaccacttgagatggtgggacggtgtggaacaggtc 550 |||||||||||||||||| | |||| ||||||||||||||| ||||| Sbjct: 844 acaagcttgagcatcaccgcctgagcctttgggacggtgtggaagaggtc 795
>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence Length = 189032 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 gaaaaataagcacctccttta 181 ||||||||||||||||||||| Sbjct: 69396 gaaaaataagcacctccttta 69416
>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence Length = 175721 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 41 aaacacatacatatgccaatataaa 65 |||||||||||||||| |||||||| Sbjct: 14370 aaacacatacatatgcaaatataaa 14346
>gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete sequence Length = 169984 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatataaagtgctttaatact 78 ||||||||||||||||||||| Sbjct: 166964 aatataaagtgctttaatact 166944
>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 201304 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatataaagtgctttaatact 78 ||||||||||||||||||||| Sbjct: 64419 aatataaagtgctttaatact 64399
>emb|Z50860.1|HSN76A1 Human DNA sequence from clone LL22NC03-76A1 on chromosome 22, complete sequence Length = 39246 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ttgagatggtgggacggtgtg 541 ||||||||||||||||||||| Sbjct: 31689 ttgagatggtgggacggtgtg 31709
>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 116115 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cttaaatagctcacaccagtg 298 ||||||||||||||||||||| Sbjct: 109765 cttaaatagctcacaccagtg 109785
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatataaagtgctttaatact 78 ||||||||||||||||||||| Sbjct: 38302 aatataaagtgctttaatact 38282
>gb|AC074314.29| 433m13, complete sequence Length = 209644 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatataaagtgctttaatact 78 ||||||||||||||||||||| Sbjct: 155135 aatataaagtgctttaatact 155115 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,481,133 Number of Sequences: 3902068 Number of extensions: 6481133 Number of successful extensions: 124487 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 124218 Number of HSP's gapped (non-prelim): 255 length of query: 779 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 756 effective length of database: 17,143,297,704 effective search space: 12960333064224 effective search space used: 12960333064224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
