Clone Information

BLAST Search Result

Clone Name	rbags29l08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474152.1\| Oryza sativa (japonica cultivar-group), predic...	325	8e-86
2	dbj\|AK071125.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	325	8e-86
3	gb\|AY107465.1\| Zea mays PCO103197 mRNA sequence	270	4e-69
4	emb\|AL606690.3\|OSJN00080 Oryza sativa genomic DNA, chromosome 4,...	100	9e-18
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
6	ref\|NM_111171.2\| Arabidopsis thaliana unknown protein AT3G03010 ...	80	8e-12
7	ref\|NM_001035550.1\| Arabidopsis thaliana unknown protein AT3G030...	80	8e-12
8	dbj\|AK119100.1\| Arabidopsis thaliana At3g03010 mRNA for unknown ...	80	8e-12
9	ref\|NM_121693.1\| Arabidopsis thaliana unknown protein AT5G16870 ...	76	1e-10
10	gb\|BT025521.1\| Arabidopsis thaliana At5g16870 mRNA, complete cds	76	1e-10
11	gb\|AY087063.1\| Arabidopsis thaliana clone 312 mRNA, complete seq...	76	1e-10
12	emb\|AL391141.1\|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BA...	58	3e-05
13	emb\|BX832297.1\|CNS0A240 Arabidopsis thaliana Full-length cDNA Co...	58	3e-05
14	dbj\|AK175366.1\| Arabidopsis thaliana mRNA, complete cds, clone: ...	58	3e-05
15	gb\|AC018363.8\|ATAC018363 Arabidopsis thaliana chromosome III BAC...	44	0.44
16	emb\|BX001053.7\| Mouse DNA sequence from clone RP23-199B9 on chro...	44	0.44
17	gb\|AY661659.1\| Sorghum bicolor clone BAC 75D9, complete sequence	42	1.7
18	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
19	gb\|AC009132.9\| Homo sapiens chromosome 16 clone RP11-503F24, com...	42	1.7
20	dbj\|AP003411.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
21	dbj\|AP003255.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
22	dbj\|AK065721.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
23	emb\|AL773531.6\| Mouse DNA sequence from clone RP23-179F21 on chr...	42	1.7
24	emb\|AL807760.6\| Mouse DNA sequence from clone RP23-456B8 on chro...	42	1.7
25	ref\|NM_104035.2\| Arabidopsis thaliana unknown protein AT1G51570 ...	40	6.9
26	gb\|AC137842.8\| Mus musculus chromosome 15, clone RP23-91M6, comp...	40	6.9
27	gb\|AY692763.1\| Saccharomyces cerevisiae clone FLH111574.01X YBL0...	40	6.9
28	gb\|AC130529.2\| Mus musculus BAC clone RP23-124O11 from chromosom...	40	6.9
29	gb\|DQ408017.1\| Plasmodium falciparum isolate 713 sequence upsAva...	40	6.9
30	gb\|AY462738.1\| Plasmodium falciparum erythrocyte membrane protei...	40	6.9
31	gb\|AC140206.2\| Mus musculus BAC clone RP24-446O8 from chromosome...	40	6.9
32	emb\|Z35818.1\|SCYBL057C S.cerevisiae chromosome II reading frame ...	40	6.9
33	emb\|Z23261.1\|SCIIL26O S.cerevisiae DNA for open reading frames Y...	40	6.9
34	emb\|AL591426.17\| Mouse DNA sequence from clone RP23-345E8 on chr...	40	6.9
35	gb\|AC078854.16\| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Ca...	40	6.9
36	emb\|AL954817.9\| Mouse DNA sequence from clone RP24-84L18 on chro...	40	6.9
37	emb\|AL596064.3\| Zebrafish DNA sequence from clone BUSM1-55K10 in...	40	6.9
38	emb\|CR394561.8\| Zebrafish DNA sequence from clone CH211-28G14 in...	40	6.9
39	emb\|CR388098.7\| Zebrafish DNA sequence from clone DKEY-12J14 in ...	40	6.9
40	gb\|AC012469.10\| Homo sapiens chromosome 10 clone RP11-216P13, co...	40	6.9
41	gb\|AC018868.4\| Homo sapiens BAC clone RP11-83J16 from 15, comple...	40	6.9
42	gb\|AF246978.2\|AF246978 Mus musculus transcription factor Stat5a ...	40	6.9
43	gb\|AC025437.6\| Homo sapiens chromosome 5 clone CTC-436K13, compl...	40	6.9
44	gb\|AC154881.6\| Mus musculus chromosome 15, clone RP24-259H19, co...	40	6.9
45	gb\|AC025294.14\|AC025294 Arabidopsis thaliana chromosome 1 BAC F1...	40	6.9
46	gb\|AC122783.16\| Mus musculus chromosome 15, clone RP24-224O11, c...	40	6.9
47	gb\|AC024261.6\|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D...	40	6.9
48	gb\|AC073918.13\|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell ...	40	6.9
49	gb\|AC167670.1\| Mus musculus BAC clone RP24-119K18 from chromosom...	40	6.9
50	emb\|BX072573.5\| Zebrafish DNA sequence from clone DKEY-16I6, com...	40	6.9
51	emb\|AL359183.16\| Human DNA sequence from clone RP11-327E2 on chr...	40	6.9
52	gb\|AC129085.6\| Mus musculus BAC clone RP23-293B11 from 13, compl...	40	6.9
53	emb\|AM115025.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
54	emb\|AM115024.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
55	emb\|AM115023.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
56	emb\|AM115022.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
57	emb\|AM115021.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
58	emb\|AM115020.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
59	emb\|AM115019.1\| Plasmodium falciparum partial mRNA for erythrocy...	40	6.9
60	emb\|AL136059.3\|CNS01DVW Human chromosome 5 DNA sequence BAC R-39...	40	6.9
61	emb\|AL591466.8\| Mouse DNA sequence from clone RP23-279L23 on chr...	40	6.9

>ref|XM_474152.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 735

 Score =  325 bits (164), Expect = 8e-86
 Identities = 248/276 (89%)
 Strand = Plus / Minus

                                                                       
Query: 233 agcttcagaccaccagtgacatcgtcaaccatgtcagccggcccaagaatagccatgact 292
           |||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 728 agcttcagaccaccggtgacatcatcgaccatgtcagctggcccaagaatagccatgact 669

                                                                       
Query: 293 gttctggaattaggtgcaatctgtgttcttccagcatcaatggtaatgtgagttggcaga 352
           ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||| | |
Sbjct: 668 gttcttgaatttggtgcgatctgtgttcttccagcatcaatagttatgtgtgttgggata 609

                                                                       
Query: 353 ttcatagattttgctctcccttgtaaaacaagcatatcttcctcgctttctactttcaca 412
           |||| ||| |||||||| |||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 608 ttcaaagactttgctcttccttgtaaaacaagcatatcttcctcgctttcaattttcacg 549

                                                                       
Query: 413 accaccttcacttggccacacctctcccatcttcgtaatgactttggtgctctctgttgg 472
           |||||||| ||||| |||||||||||||| |||| |||||| ||||| ||||||||||||
Sbjct: 548 accaccttaacttgaccacacctctcccaccttcttaatgattttggagctctctgttgg 489

                                               
Query: 473 agttttttaaacaagcccagtgttgcatggctgcat 508
           |||||||||||||  ||||  |||||||||||||||
Sbjct: 488 agttttttaaacagacccaacgttgcatggctgcat 453

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>dbj|AK071125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082K03, full
           insert sequence
          Length = 1114

 Score =  325 bits (164), Expect = 8e-86
 Identities = 248/276 (89%)
 Strand = Plus / Minus

                                                                       
Query: 233 agcttcagaccaccagtgacatcgtcaaccatgtcagccggcccaagaatagccatgact 292
           |||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 808 agcttcagaccaccggtgacatcatcgaccatgtcagctggcccaagaatagccatgact 749

                                                                       
Query: 293 gttctggaattaggtgcaatctgtgttcttccagcatcaatggtaatgtgagttggcaga 352
           ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||| | |
Sbjct: 748 gttcttgaatttggtgcgatctgtgttcttccagcatcaatagttatgtgtgttgggata 689

                                                                       
Query: 353 ttcatagattttgctctcccttgtaaaacaagcatatcttcctcgctttctactttcaca 412
           |||| ||| |||||||| |||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 688 ttcaaagactttgctcttccttgtaaaacaagcatatcttcctcgctttcaattttcacg 629

                                                                       
Query: 413 accaccttcacttggccacacctctcccatcttcgtaatgactttggtgctctctgttgg 472
           |||||||| ||||| |||||||||||||| |||| |||||| ||||| ||||||||||||
Sbjct: 628 accaccttaacttgaccacacctctcccaccttcttaatgattttggagctctctgttgg 569

                                               
Query: 473 agttttttaaacaagcccagtgttgcatggctgcat 508
           |||||||||||||  ||||  |||||||||||||||
Sbjct: 568 agttttttaaacagacccaacgttgcatggctgcat 533

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>gb|AY107465.1| Zea mays PCO103197 mRNA sequence
          Length = 651

 Score =  270 bits (136), Expect = 4e-69
 Identities = 220/248 (88%)
 Strand = Plus / Minus

                                                                       
Query: 233 agcttcagaccaccagtgacatcgtcaaccatgtcagccggcccaagaatagccatgact 292
           ||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 280 agcttcagaccgccagtaacatcatcaaccatatcagctggccccagaatagccatgact 221

                                                                       
Query: 293 gttctggaattaggtgcaatctgtgttcttccagcatcaatggtaatgtgagttggcaga 352
           || || ||||| || |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 220 gtccttgaatttggagcaatctgtgttcttccagcgtctatggttatgtgagttggcaga 161

                                                                       
Query: 353 ttcatagattttgctctcccttgtaaaacaagcatatcttcctcgctttctactttcaca 412
           || | ||| |||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 160 tttaaagactttgctctcccttgtaaaactagcatgtcttcctcgctttctattttcaca 101

                                                                       
Query: 413 accaccttcacttggccacacctctcccatcttcgtaatgactttggtgctctctgttgg 472
           ||||| || ||||| ||||||| |||||| |||| || ||| ||||| ||||||||||||
Sbjct: 100 accactttaacttgcccacaccgctcccaccttcttagtgattttggagctctctgttgg 41

                   
Query: 473 agtttttt 480
           ||||||||
Sbjct: 40  agtttttt 33

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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                         
Query: 372   cttgtaaaacaagcatatcttcctcgctttctactttcacaaccaccttcacttggccac 431
             ||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| ||||
Sbjct: 65932 cttgtaaaacaagcatatcttcctcgctttcaattttcacgaccaccttaacttgaccac 65991

                       
Query: 432   acctctccca 441
             ||||||||||
Sbjct: 65992 acctctccca 66001



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                         
Query: 443   cttcgtaatgactttggtgctctctgttggagttttttaaacaagcccagtgttgcatgg 502
             |||| |||||| ||||| |||||||||||||||||||||||||  ||||  |||||||||
Sbjct: 66128 cttcttaatgattttggagctctctgttggagttttttaaacagacccaacgttgcatgg 66187

                
Query: 503   ctg 505
             |||
Sbjct: 66188 ctg 66190



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 305   ggtgcaatctgtgttcttccagcatcaatggtaatgtgagttggcagattcatagatttt 364
             ||||| ||||||||||||||||||||||| || ||||| ||||| | ||||| ||| |||
Sbjct: 65392 ggtgcgatctgtgttcttccagcatcaatagttatgtgtgttgggatattcaaagacttt 65451

                  
Query: 365   gctct 369
             |||||
Sbjct: 65452 gctct 65456



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 233   agcttcagaccaccagtgacatcgtcaaccatgtcagccggccc 276
             |||||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 65146 agcttcagaccaccggtgacatcatcgaccatgtcagctggccc 65189



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 275   ccaagaatagccatgactgttctggaat 302
             ||||||||||||||||||||||| ||||
Sbjct: 65272 ccaagaatagccatgactgttcttgaat 65299

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                            
Query: 372      cttgtaaaacaagcatatcttcctcgctttctactttcacaaccaccttcacttggccac 431
                ||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| ||||
Sbjct: 33293671 cttgtaaaacaagcatatcttcctcgctttcaattttcacgaccaccttaacttgaccac 33293730

                          
Query: 432      acctctccca 441
                ||||||||||
Sbjct: 33293731 acctctccca 33293740



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 443      cttcgtaatgactttggtgctctctgttggagttttttaaacaagcccagtgttgcatgg 502
                |||| |||||| ||||| |||||||||||||||||||||||||  ||||  |||||||||
Sbjct: 33293867 cttcttaatgattttggagctctctgttggagttttttaaacagacccaacgttgcatgg 33293926

                   
Query: 503      ctg 505
                |||
Sbjct: 33293927 ctg 33293929



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 305      ggtgcaatctgtgttcttccagcatcaatggtaatgtgagttggcagattcatagatttt 364
                ||||| ||||||||||||||||||||||| || ||||| ||||| | ||||| ||| |||
Sbjct: 33293131 ggtgcgatctgtgttcttccagcatcaatagttatgtgtgttgggatattcaaagacttt 33293190

                     
Query: 365      gctct 369
                |||||
Sbjct: 33293191 gctct 33293195



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 233      agcttcagaccaccagtgacatcgtcaaccatgtcagccggccc 276
                |||||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 33292885 agcttcagaccaccggtgacatcatcgaccatgtcagctggccc 33292928



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 275      ccaagaatagccatgactgttctggaat 302
                ||||||||||||||||||||||| ||||
Sbjct: 33293011 ccaagaatagccatgactgttcttgaat 33293038

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>ref|NM_111171.2| Arabidopsis thaliana unknown protein AT3G03010 transcript variant
           AT3G03010.1 mRNA, complete cds
          Length = 938

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| ||||| || ||||| || || ||||||||| |||| |||||||||
Sbjct: 595 ccaagaatagccattactgtccttgaatttggagcgatctgtgtttttcccgcatcaatg 536

                                                                       
Query: 335 gtaatgtgagttggcagattcatagattttgctctcccttgtaaaacaagcatatcttcc 394
           || || || |||||||| ||||  |  ||||||||  |||| ||||| ||||| ||||||
Sbjct: 535 gtgatatgggttggcagtttcagggtctttgctctttcttgcaaaactagcatctcttcc 476

                   
Query: 395 tcgctttc 402
           || |||||
Sbjct: 475 tcactttc 468

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>ref|NM_001035550.1| Arabidopsis thaliana unknown protein AT3G03010 transcript variant
           AT3G03010.2 mRNA, complete cds
          Length = 1098

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| ||||| || ||||| || || ||||||||| |||| |||||||||
Sbjct: 755 ccaagaatagccattactgtccttgaatttggagcgatctgtgtttttcccgcatcaatg 696

                                                                       
Query: 335 gtaatgtgagttggcagattcatagattttgctctcccttgtaaaacaagcatatcttcc 394
           || || || |||||||| ||||  |  ||||||||  |||| ||||| ||||| ||||||
Sbjct: 695 gtgatatgggttggcagtttcagggtctttgctctttcttgcaaaactagcatctcttcc 636

                   
Query: 395 tcgctttc 402
           || |||||
Sbjct: 635 tcactttc 628

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>dbj|AK119100.1| Arabidopsis thaliana At3g03010 mRNA for unknown protein, complete
           cds, clone: RAFL21-45-G15
          Length = 915

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| ||||| || ||||| || || ||||||||| |||| |||||||||
Sbjct: 585 ccaagaatagccattactgtccttgaatttggagcgatctgtgtttttcccgcatcaatg 526

                                                                       
Query: 335 gtaatgtgagttggcagattcatagattttgctctcccttgtaaaacaagcatatcttcc 394
           || || || |||||||| ||||  |  ||||||||  |||| ||||| ||||| ||||||
Sbjct: 525 gtgatatgggttggcagtttcagggtctttgctctttcttgcaaaactagcatctcttcc 466

                   
Query: 395 tcgctttc 402
           || |||||
Sbjct: 465 tcactttc 458

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>ref|NM_121693.1| Arabidopsis thaliana unknown protein AT5G16870 mRNA, complete cds
          Length = 729

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| || || || ||||| || |||||||||||||||||||||||||||
Sbjct: 516 ccaagaatagccataaccgtccttgaatttggggcaatctgtgttcttccagcatcaatg 457

             
Query: 335 gt 336
           ||
Sbjct: 456 gt 455

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>gb|BT025521.1| Arabidopsis thaliana At5g16870 mRNA, complete cds
          Length = 510

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| || || || ||||| || |||||||||||||||||||||||||||
Sbjct: 461 ccaagaatagccataaccgtccttgaatttggggcaatctgtgttcttccagcatcaatg 402

             
Query: 335 gt 336
           ||
Sbjct: 401 gt 400

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>gb|AY087063.1| Arabidopsis thaliana clone 312 mRNA, complete sequence
          Length = 729

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccaagaatagccatgactgttctggaattaggtgcaatctgtgttcttccagcatcaatg 334
           |||||||||||||| || || || ||||| || |||||||||||||||||||||||||||
Sbjct: 516 ccaagaatagccataaccgtccttgaatttggggcaatctgtgttcttccagcatcaatg 457

             
Query: 335 gt 336
           ||
Sbjct: 456 gt 455

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>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project)
          Length = 98101

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                         
Query: 308  gcaatctgtgttcttccagcatcaatggt 336
            |||||||||||||||||||||||||||||
Sbjct: 4689 gcaatctgtgttcttccagcatcaatggt 4717

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>emb|BX832297.1|CNS0A240 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZB05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1442

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 308 gcaatctgtgttcttccagcatcaatggt 336
           |||||||||||||||||||||||||||||
Sbjct: 452 gcaatctgtgttcttccagcatcaatggt 424

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>dbj|AK175366.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-80-E08
          Length = 1022

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 308 gcaatctgtgttcttccagcatcaatggt 336
           |||||||||||||||||||||||||||||
Sbjct: 480 gcaatctgtgttcttccagcatcaatggt 452

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>gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence,
            complete sequence
          Length = 100559

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 311  atctgtgttcttccagcatcaatggtaatgtgagttggcagattca 356
            ||||||||| |||| ||||||||||| || || |||||||| ||||
Sbjct: 7053 atctgtgtttttcccgcatcaatggtgatatgggttggcagtttca 7008

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>emb|BX001053.7| Mouse DNA sequence from clone RP23-199B9 on chromosome 4, complete
             sequence
          Length = 111777

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   ctgtgttcttccagcatcaatg 334
             ||||||||||||||||||||||
Sbjct: 87315 ctgtgttcttccagcatcaatg 87336

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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     tggaagaatgatatcaagtaa 107
              |||||||||||||||||||||
Sbjct: 113038 tggaagaatgatatcaagtaa 113058

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 53       taaaagtggacaaaacctccttcca 77
                |||||||| ||||||||||||||||
Sbjct: 34769760 taaaagtgaacaaaacctccttcca 34769784

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>gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, complete sequence
          Length = 216342

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 397    gctttctactttcacaaccac 417
              |||||||||||||||||||||
Sbjct: 129500 gctttctactttcacaaccac 129520

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>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1148D12
          Length = 132060

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 53    taaaagtggacaaaacctccttcca 77
             |||||||| ||||||||||||||||
Sbjct: 85000 taaaagtgaacaaaacctccttcca 85024

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>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0454H12
          Length = 161004

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 53    taaaagtggacaaaacctccttcca 77
             |||||||| ||||||||||||||||
Sbjct: 28932 taaaagtgaacaaaacctccttcca 28956

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>dbj|AK065721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038F20, full
            insert sequence
          Length = 1476

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 53   taaaagtggacaaaacctccttcca 77
            |||||||| ||||||||||||||||
Sbjct: 1129 taaaagtgaacaaaacctccttcca 1105

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>emb|AL773531.6| Mouse DNA sequence from clone RP23-179F21 on chromosome 2, complete
              sequence
          Length = 202065

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     caaaacctccttccaaacaaa 83
              |||||||||||||||||||||
Sbjct: 190535 caaaacctccttccaaacaaa 190555

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>emb|AL807760.6| Mouse DNA sequence from clone RP23-456B8 on chromosome X, complete
             sequence
          Length = 130514

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   atagccatgactgttctggaa 301
             |||||||||||||||||||||
Sbjct: 88017 atagccatgactgttctggaa 87997

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>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds
          Length = 2513

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   cctccttccaaacaaatcct 87
            ||||||||||||||||||||
Sbjct: 1007 cctccttccaaacaaatcct 988

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>gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, complete sequence
          Length = 230609

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   taaaccaacaaagccaaggt 124
             ||||||||||||||||||||
Sbjct: 26670 taaaccaacaaagccaaggt 26651

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>gb|AY692763.1| Saccharomyces cerevisiae clone FLH111574.01X YBL057C gene, complete
           cds
          Length = 645

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 308 gcaatctgtgttcttccagcatca 331
           |||||||||||||| |||||||||
Sbjct: 560 gcaatctgtgttctaccagcatca 537

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>gb|AC130529.2| Mus musculus BAC clone RP23-124O11 from chromosome 16, complete sequence
          Length = 231967

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    tagccatgactgttctggaa 301
              ||||||||||||||||||||
Sbjct: 179562 tagccatgactgttctggaa 179543

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>gb|DQ408017.1| Plasmodium falciparum isolate 713 sequence
           upsAvar_5'UTR_DBL1alpha1_seq5 erythrocyte membrane
           protein 1 (upsAvar) gene, partial cds
          Length = 1023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 804 cccatcttcgtaatgacttt 785

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>gb|AY462738.1| Plasmodium falciparum erythrocyte membrane protein 1 (var) mRNA,
           partial cds, DBL1alpha region
          Length = 383

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 147 cccatcttcgtaatgacttt 128

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>gb|AC140206.2| Mus musculus BAC clone RP24-446O8 from chromosome 16, complete
           sequence
          Length = 195790

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 tagccatgactgttctggaa 301
           ||||||||||||||||||||
Sbjct: 490 tagccatgactgttctggaa 471

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>emb|Z35818.1|SCYBL057C S.cerevisiae chromosome II reading frame ORF YBL057c
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 gcaatctgtgttcttccagcatca 331
           |||||||||||||| |||||||||
Sbjct: 181 gcaatctgtgttctaccagcatca 204

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>emb|Z23261.1|SCIIL26O S.cerevisiae DNA for open reading frames YBL0501, YBL0505/sec17p,
             YBL0506, YBL0507, YBL0509, YBL0511, YBL0513, YBL0514,
             YBL0515, YBL0516, YBL0517, YBL0519, YBL0521/KIP1, YBL0524,
             YBL0526
          Length = 32560

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 308   gcaatctgtgttcttccagcatca 331
             |||||||||||||| |||||||||
Sbjct: 15137 gcaatctgtgttctaccagcatca 15160

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>emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chromosome 11 Contains a
             novel gene, the Arht1 gene for ras homolog gene family
             member T1, the 5' end of the Rhbdl4 gene for rhomboid
             veinlet-like 4 (Drosophila), complete sequence
          Length = 153420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   tagccatgactgttctggaattag 305
             ||||| ||||||||||||||||||
Sbjct: 65401 tagccctgactgttctggaattag 65424

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>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162313

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tctgtgttcttccagcatca 331
              ||||||||||||||||||||
Sbjct: 136603 tctgtgttcttccagcatca 136584

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>emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chromosome 11 Contains the 5'
              end of the gene for a novel protein similar to human
              non-kinase Cdc42 effector protein SPEC2, a heterogeneous
              nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, three
              novel genes, the Hint1 gene for histidine triad nucleotide
              binding protein and two CpG islands, complete sequence
          Length = 156468

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    tagccatgactgttctggaattag 305
              |||||||| |||||||||||||||
Sbjct: 107154 tagccatggctgttctggaattag 107177

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>emb|AL596064.3| Zebrafish DNA sequence from clone BUSM1-55K10 in linkage group 17,
            complete sequence
          Length = 12264

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 463  tctctgttggagttttttaaacaa 486
            |||||||| |||||||||||||||
Sbjct: 3607 tctctgttagagttttttaaacaa 3584

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>emb|CR394561.8| Zebrafish DNA sequence from clone CH211-28G14 in linkage group 17,
             complete sequence
          Length = 154908

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   tctctgttggagttttttaaacaa 486
             |||||||| |||||||||||||||
Sbjct: 31156 tctctgttagagttttttaaacaa 31133

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>emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in linkage group 13,
              complete sequence
          Length = 192818

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    gccacacctctcccatcttc 446
              ||||||||||||||||||||
Sbjct: 108039 gccacacctctcccatcttc 108058

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>gb|AC012469.10| Homo sapiens chromosome 10 clone RP11-216P13, complete sequence
          Length = 170367

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    aaaattccagcattgccctttggg 196
              ||||| ||||||||||||||||||
Sbjct: 103608 aaaataccagcattgccctttggg 103631

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>gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, complete sequence
          Length = 162100

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tcaagtaaaagtggacaaaa 67
             ||||||||||||||||||||
Sbjct: 34118 tcaagtaaaagtggacaaaa 34137

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>gb|AF246978.2|AF246978 Mus musculus transcription factor Stat5a (Stat5a) and transcription
             factor Stat3 (Stat3) genes, complete cds
          Length = 83848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tagccatgactgttctggaa 301
             ||||||||||||||||||||
Sbjct: 69695 tagccatgactgttctggaa 69676

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>gb|AC025437.6| Homo sapiens chromosome 5 clone CTC-436K13, complete sequence
          Length = 171125

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     acctccttccaaacaaatcc 86
              ||||||||||||||||||||
Sbjct: 137938 acctccttccaaacaaatcc 137957

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>gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, complete sequence
          Length = 180231

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    tagccatgactgttctggaa 301
              ||||||||||||||||||||
Sbjct: 102940 tagccatgactgttctggaa 102959

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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
              sequence
          Length = 124511

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     cctccttccaaacaaatcct 87
              ||||||||||||||||||||
Sbjct: 122045 cctccttccaaacaaatcct 122026

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>gb|AC122783.16| Mus musculus chromosome 15, clone RP24-224O11, complete sequence
          Length = 178493

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   taaaccaacaaagccaaggt 124
             ||||||||||||||||||||
Sbjct: 29417 taaaccaacaaagccaaggt 29436

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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    cctccttccaaacaaatcct 87
             ||||||||||||||||||||
Sbjct: 17065 cctccttccaaacaaatcct 17046

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>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tagccatgactgttctggaa 301
             ||||||||||||||||||||
Sbjct: 34259 tagccatgactgttctggaa 34278

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>gb|AC167670.1| Mus musculus BAC clone RP24-119K18 from chromosome 16, complete
             sequence
          Length = 200044

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aagtaaaagtggacaaaacc 69
             ||||||||||||||||||||
Sbjct: 40878 aagtaaaagtggacaaaacc 40897

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>emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, complete sequence
          Length = 207797

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    gccacacctctcccatcttc 446
              ||||||||||||||||||||
Sbjct: 118254 gccacacctctcccatcttc 118235

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>emb|AL359183.16| Human DNA sequence from clone RP11-327E2 on chromosome 10 Contains the 3'
              end of the gene for equilibrative nucleoside transporter 3
              (ENT3), the 5' end of the CDH23 gene for cadherin related
              23, a novel gene and one CpG island, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    aaaattccagcattgccctttggg 196
              ||||| ||||||||||||||||||
Sbjct: 174480 aaaataccagcattgccctttggg 174457

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>gb|AC129085.6| Mus musculus BAC clone RP23-293B11 from 13, complete sequence
          Length = 206677

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tggccacacctctcccatct 444
             ||||||||||||||||||||
Sbjct: 78703 tggccacacctctcccatct 78722

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>emb|AM115025.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1488
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115024.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1487
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115023.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1486
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115022.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1485
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115021.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1484
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115020.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1483
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AM115019.1| Plasmodium falciparum partial mRNA for erythrocyte membrane protein
           (var gene), clone 1482
          Length = 343

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cccatcttcgtaatgacttt 457
           ||||||||||||||||||||
Sbjct: 133 cccatcttcgtaatgacttt 114

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>emb|AL136059.3|CNS01DVW Human chromosome 5 DNA sequence BAC R-391B7 of library RPCI-11 from
             chromosome 5 of Homo sapiens (Human), complete sequence
          Length = 188334

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    acctccttccaaacaaatcc 86
             ||||||||||||||||||||
Sbjct: 55813 acctccttccaaacaaatcc 55832

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>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete
             sequence
          Length = 239847

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tagccatgactgttctggaa 301
             ||||||||||||||||||||
Sbjct: 68574 tagccatgactgttctggaa 68593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,018,742
Number of Sequences: 3902068
Number of extensions: 5018742
Number of successful extensions: 95080
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94919
Number of HSP's gapped (non-prelim): 161
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result