ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1k04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009349.1| Triticum aestivum clone wlm96.pk0007.e4:fis, full... 835 0.0
2gb|AY675583.1| Zea mays putative serine/threonine-specific prote... 101 3e-18
3gb|AY112593.1| Zea mays CL3200_1 mRNA sequence 101 3e-18
4gb|BT018428.1| Zea mays clone EL01N0363F09.d mRNA sequence 74 6e-10
5ref|XM_475738.1| Oryza sativa (japonica cultivar-group), predic... 70 1e-08
6dbj|AK104868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
7dbj|AK067158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
8dbj|D82039.1| Oryza sativa mRNA for OSK1, complete cds 70 1e-08
9gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
10dbj|AB101655.1| Oryza sativa (japonica cultivar-group) OSK1 gene... 66 2e-07
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
12gb|AF062479.1|AF062479 Oryza sativa protein kinase SNF1 (Snf1) m... 54 6e-04
13emb|X82548.1|HVBKIN2 H.vulgare mRNA for SNF1-related protein kinase 50 0.009
14gb|AF143743.1| Lycopersicon esculentum SNF1 (SNF1) mRNA, complet... 46 0.14
15gb|U83797.4|STU83797 Solanum tuberosum StubSNF1 protein (SNF1) m... 44 0.56
16emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in l... 44 0.56
17gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, c... 42 2.2
18gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome ... 42 2.2
19gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 42 2.2
20gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome... 42 2.2
21gb|AC151761.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.8
22gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complet... 40 8.8
23gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, com... 40 8.8
24gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, com... 40 8.8
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.8
26gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 8.8
27gb|AC126121.2| Homo sapiens chromosome 3 clone RP11-719N22, comp... 40 8.8
28gb|AY830085.1| Flavobacterium sp. 4214 beta-galactosidase precur... 40 8.8
29gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete s... 40 8.8
30gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Canc... 40 8.8
31emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chr... 40 8.8
32gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, comple... 40 8.8
33dbj|AK046759.1| Mus musculus 4 days neonate thymus cDNA, RIKEN f... 40 8.8
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
35gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory rece... 40 8.8
36gb|AE000783.1| Borrelia burgdorferi B31, complete genome 40 8.8
37dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 8.8
38dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, ... 40 8.8
39dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, ... 40 8.8
40gb|AY422720.1| Caedibacter taeniospiralis plasmid pKAP298, compl... 40 8.8
41gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, co... 40 8.8
42gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.8
43emb|CR932040.2| Medicago truncatula chromosome 5 clone mth2-55h1... 40 8.8
44emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chr... 40 8.8 
>gb|BT009349.1| Triticum aestivum clone wlm96.pk0007.e4:fis, full insert mRNA
            sequence
          Length = 2006

 Score =  835 bits (421), Expect = 0.0
 Identities = 594/653 (90%), Gaps = 16/653 (2%)
 Strand = Plus / Minus

                                                                        
Query: 8    tgaagaaattattggtgtgcgtggtctggtctggagacccagccagtaaaaattacatgc 67
            ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1928 tgaagaaattattcgtgtacgtggtctggtctggagacccagacagtaaaaattacatgc 1869

                                                                        
Query: 68   aggtaaacagcagtagagtagtacagtatgtcccaaggggccaaaataggattaatcaat 127
            | ||||||||||||||||||| |  ||||||||||||||||||| ||||||||||||| |
Sbjct: 1868 aagtaaacagcagtagagtagga--gtatgtcccaaggggccaatataggattaatcagt 1811

                                                                        
Query: 128  aatacttttatatcctagtgcctttggcggcagctggaaacaacctgatggcactggttt 187
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| 
Sbjct: 1810 aatacttctatatcctagtgcctttggcggcagctggaaataacctgatggcaatagttc 1751

                                                                        
Query: 188  cttgcttgcttcacttgcc----------aggtctaaattcagcttataggcgccgaaat 237
            |||||||||||||||||||          ||||||||||||||| |||||||||||||||
Sbjct: 1750 cttgcttgcttcacttgcccgcccctgccaggtctaaattcagcatataggcgccgaaat 1691

                                                                        
Query: 238  gagcacacaacagctccgcatgtctacatactccacaactttgatccgctggagaaagcg 297
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 1690 aagcacacaacagctccgcatgtctacatactccacgactttgatccgctggagaaagct 1631

                                                                        
Query: 298  tactatttacatctctttagagtggtacaacatacattccccgggcacgt-tggtatcag 356
            | |||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||| 
Sbjct: 1630 tgctatttacatctctttagagtgatacaacatacattcctcgggcacatctggtatcaa 1571

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aagactctcagctgagctagaaaggcggcacatagatcaagaaagaggagatgcggcccg 1511

                                                                        
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 476
            || ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||
Sbjct: 1510 ctcgccctttgcaaatccagaaggtatttctcatctcttgttttgtaaagctgaagttcg 1451

                                                                        
Query: 477  aacttaattagatttaacttgtcacccacgtcatcggtttcaataggctctgcaataaag 536
            |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct: 1450 aacttaattaaatttaacttgtcacccaggtcgtcggtttcaataggctctgcactgaag 1391

                                                                        
Query: 537  ttataattggtatgattcatattgtcctgaccaggaaagcc---aggactccatctacat 593
            ||||||||||||||||||||||| |||||||| ||||||||   ||||||||||||||||
Sbjct: 1390 ttataattggtatgattcatattctcctgaccgggaaagccaggaggactccatctacat 1331

                                                                 
Query: 594  ttcatgttatagtgtccaannnnnnnncagtatacattcagttcttgcagagc 646
            |||||||||||||||||||        ||||||||||||||||||||||||||
Sbjct: 1330 ttcatgttatagtgtccaatttttttccagtatacattcagttcttgcagagc 1278
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>gb|AY675583.1| Zea mays putative serine/threonine-specific protein kinase (kin2)
           mRNA, partial cds
          Length = 849

 Score =  101 bits (51), Expect = 3e-18
 Identities = 172/212 (81%), Gaps = 9/212 (4%)
 Strand = Plus / Minus

                                                                       
Query: 396 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 455
           ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||||||  ||
Sbjct: 458 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 399

                                                                       
Query: 456 gttttgtaaagctgaagttcgaacttaattagatttaacttgtcacccacgtcatcggtt 515
           |||||||| ||||||| ||| |||||||||| | ||||| | |||| || |  ||| |||
Sbjct: 398 gttttgtacagctgaatttcaaacttaattaaacttaacctctcactcaggctatcagtt 339

                                                                       
Query: 516 tcaataggctctgcaataaagttataattggtatgattcatattgtcctgaccaggaaag 575
           ||||| | | ||||| | ||||||| |||| |||||     |||    ||| ||||||||
Sbjct: 338 tcaatggaccctgcactgaagttatgattgttatga-----att----tgagcaggaaag 288

                                           
Query: 576 ccaggactccatctacatttcatgttatagtg 607
           |||||||||||||| || ||||||||||||||
Sbjct: 287 ccaggactccatctgcacttcatgttatagtg 256
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>gb|AY112593.1| Zea mays CL3200_1 mRNA sequence
          Length = 1019

 Score =  101 bits (51), Expect = 3e-18
 Identities = 172/212 (81%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                       
Query: 396 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 455
           ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||||||  ||
Sbjct: 348 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 407

                                                                       
Query: 456 gttttgtaaagctgaagttcgaacttaattagatttaacttgtcacccacgtcatcggtt 515
           |||||||| ||||||| ||| |||||||||| | ||||| | |||| || |  ||| |||
Sbjct: 408 gttttgtacagctgaatttcaaacttaattaaacttaacctctcactcaggctatcagtt 467

                                                                       
Query: 516 tcaataggctctgcaataaagttataattggtatgattcatattgtcctgaccaggaaag 575
           ||||| | | ||||| | ||||||| |||| |||||     |||    ||| ||||||||
Sbjct: 468 tcaatggaccctgcactgaagttatgattgttatga-----att----tgagcaggaaag 518

                                           
Query: 576 ccaggactccatctacatttcatgttatagtg 607
           |||||||||||||| || ||||||||||||||
Sbjct: 519 ccaggactccatctgcacttcatgttatagtg 550
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>gb|BT018428.1| Zea mays clone EL01N0363F09.d mRNA sequence
          Length = 1948

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 574 agccaggactccatctacatttcatgttatagtgtccaannnnnnnncagtatacattca 633
           |||||||||||||||| ||||||||||| ||||||||||        ||||| |||||||
Sbjct: 569 agccaggactccatctgcatttcatgttgtagtgtccaatctttttccagtaaacattca 628

                        
Query: 634 gttcttgcagagc 646
           |||||||||||||
Sbjct: 629 gttcttgcagagc 641



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                       
Query: 360 actctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccgctg 419
           ||||||||||| | ||| ||||||| ||| |  || |||||||| ||||| |  || |||
Sbjct: 352 actctcagctgagttagaaaggcggaacacaagtccagaaagagaagatgtgatccactg 411

                                                               
Query: 420 gccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
            |||||||||  || |||||||| ||||| ||| | ||||||||||||||||
Sbjct: 412 accctttgcaggtcaagaaggtacttctcatccctcgttttgtaaagctgaa 463
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>ref|XM_475738.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1514 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1455

                                                                   
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1454 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1400



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 578  aggactccatctacatttcatgttatagtgtccaa 612
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1287 aggactccatctgcatttcatgttataatgtccaa 1253
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>dbj|AK104868.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A03, full
           insert sequence
          Length = 1203

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 357 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
           |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 847 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 788

                                                                  
Query: 417 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
           ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 787 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 733



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 578 aggactccatctacatttcatgttatagtgtccaa 612
           |||||||||||| |||||||||||||| |||||||
Sbjct: 620 aggactccatctgcatttcatgttataatgtccaa 586
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>dbj|AK067158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M16, full
            insert sequence
          Length = 2073

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1703 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1644

                                                                   
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1643 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1589



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 578  aggactccatctacatttcatgttatagtgtccaa 612
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1476 aggactccatctgcatttcatgttataatgtccaa 1442
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>dbj|D82039.1| Oryza sativa mRNA for OSK1, complete cds
          Length = 2209

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1697 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1638

                                                                   
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1637 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1583



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 578  aggactccatctacatttcatgttatagtgtccaa 612
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1470 aggactccatctgcatttcatgttataatgtccaa 1436
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>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09,
             complete sequence
          Length = 94399

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                         
Query: 357   aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
             |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 58069 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 58128

                                                                  
Query: 417   ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 469
             ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 58129 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 58181



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 578   aggactccatctacatttcatgttatagtgtccaa 612
             |||||||||||| |||||||||||||| |||||||
Sbjct: 58582 aggactccatctgcatttcatgttataatgtccaa 58616
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>dbj|AB101655.1| Oryza sativa (japonica cultivar-group) OSK1 gene for SnRK1a protein
            kinase, complete cds
          Length = 6112

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 5529 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 5470

                                                                 
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 469
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 5469 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 5417



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 578  aggactccatctacatttcatgttatagtgtccaa 612
            |||||||||||| |||||||||||||| |||||||
Sbjct: 5016 aggactccatctgcatttcatgttataatgtccaa 4982
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                            
Query: 357      aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
                |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 26140729 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 26140788

                                                                     
Query: 417      ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 469
                ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 26140789 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 26140841



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 578      aggactccatctacatttcatgttatagtgtccaa 612
                |||||||||||| |||||||||||||| |||||||
Sbjct: 26141242 aggactccatctgcatttcatgttataatgtccaa 26141276
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>gb|AF062479.1|AF062479 Oryza sativa protein kinase SNF1 (Snf1) mRNA, complete cds
          Length = 2100

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1672 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1613

                                                                   
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 471
            |||  ||||||||| || |||| |||||| || ||| ||||||||||||||||||
Sbjct: 1612 ctgagcctttgcaagtcaagaaagtatttttcatcccttgttttgtaaagctgaa 1558



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 578  aggactccatctacatttcatgttatagtgtccaa 612
            |||||||||||| |||||||||||||  |||||||
Sbjct: 1445 aggactccatctgcatttcatgttatgatgtccaa 1411
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>emb|X82548.1|HVBKIN2 H.vulgare mRNA for SNF1-related protein kinase
          Length = 1453

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 100/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 357  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 416
            |||||||||||||| | ||| ||||| | ||| || || ||||||||||| || || || 
Sbjct: 1452 aggactctcagctgggttagaaaggcagaacacaggtccagaaagaggagctgtggtcca 1393

                                                                        
Query: 417  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 476
            ||  |||||||||| || ||||| || || ||  || |||||||||| ||||||| ||| 
Sbjct: 1392 ctaaccctttgcaagtcgagaagatacttatcaccccttgttttgtacagctgaatttca 1333

                 
Query: 477  aactt 481
            |||||
Sbjct: 1332 aactt 1328



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 572  aaagccaggactccatctacatttcatgttatagtgtccaa 612
            ||||||||||||||| || || |||||||||||||| ||||
Sbjct: 1234 aaagccaggactccacctgcacttcatgttatagtgcccaa 1194
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>gb|AF143743.1| Lycopersicon esculentum SNF1 (SNF1) mRNA, complete cds
          Length = 1948

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 66/83 (79%)
 Strand = Plus / Minus

                                                                        
Query: 564  tgaccaggaaagccaggactccatctacatttcatgttatagtgtccaannnnnnnncag 623
            |||||||| |||| ||||  ||||| ||||||||||||||| || ||||        || 
Sbjct: 1345 tgaccaggtaagctaggaacccatcgacatttcatgttatactgaccaatctttttccaa 1286

                                   
Query: 624  tatacattcagttcttgcagagc 646
             ||||||||||||||||||||||
Sbjct: 1285 catacattcagttcttgcagagc 1263
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>gb|U83797.4|STU83797 Solanum tuberosum StubSNF1 protein (SNF1) mRNA, complete cds
          Length = 1966

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 625  atacattcagttcttgcagagc 646
            ||||||||||||||||||||||
Sbjct: 1448 atacattcagttcttgcagagc 1427
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>emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in linkage group 3, complete
              sequence
          Length = 242078

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 552    ttcatattgtcctgaccaggaa 573
              ||||||||||||||||||||||
Sbjct: 202165 ttcatattgtcctgaccaggaa 202144
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>gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, complete sequence
          Length = 195771

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 513    gtttcaataggctctgcaata 533
              |||||||||||||||||||||
Sbjct: 141225 gtttcaataggctctgcaata 141205
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>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence
          Length = 197373

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 513    gtttcaataggctctgcaata 533
              |||||||||||||||||||||
Sbjct: 183266 gtttcaataggctctgcaata 183286
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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 416   gctggccctttgcaaatccagaagg 440
             |||||||||||||||||| ||||||
Sbjct: 16469 gctggccctttgcaaatcaagaagg 16445
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>gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome 16, complete sequence
          Length = 159556

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    ctatttacatctctttagagt 320
              |||||||||||||||||||||
Sbjct: 151142 ctatttacatctctttagagt 151162
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>gb|AC151761.1| Ornithorhynchus anatinus chromosome UNK clone OABb-434P24, complete
             sequence
          Length = 134595

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 235   aatgagcacacaacagctccgcat 258
             |||||||| |||||||||||||||
Sbjct: 65169 aatgagcagacaacagctccgcat 65192
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>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence
          Length = 159541

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   tctgcaataaagttataatt 544
             ||||||||||||||||||||
Sbjct: 39392 tctgcaataaagttataatt 39373
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>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence
          Length = 192643

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   attaatcaataatactttta 137
             ||||||||||||||||||||
Sbjct: 88475 attaatcaataatactttta 88456
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>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence
          Length = 219617

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   attaatcaataatactttta 137
             ||||||||||||||||||||
Sbjct: 47050 attaatcaataatactttta 47031
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      aaaataggattaatcaataa 129
                ||||||||||||||||||||
Sbjct: 20662751 aaaataggattaatcaataa 20662732
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>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaaataggattaatcaataa 129
             ||||||||||||||||||||
Sbjct: 76508 aaaataggattaatcaataa 76489
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>gb|AC126121.2| Homo sapiens chromosome 3 clone RP11-719N22, complete sequence
          Length = 215273

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 621    cagtatacattcagttcttg 640
              ||||||||||||||||||||
Sbjct: 114708 cagtatacattcagttcttg 114727
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>gb|AY830085.1| Flavobacterium sp. 4214 beta-galactosidase precursor, gene, complete
            cds
          Length = 3141

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aattacatgcaggtaaacag 77
            ||||||||||||||||||||
Sbjct: 2443 aattacatgcaggtaaacag 2462
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>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 627   acattcagttcttgcagagc 646
             ||||||||||||||||||||
Sbjct: 93048 acattcagttcttgcagagc 93029
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>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 138412

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   ctccatctacatttcatgtt 601
             ||||||||||||||||||||
Sbjct: 35068 ctccatctacatttcatgtt 35049
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>emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chromosome 11 Contains the 5'
              end of the Grb10 gene for growth factor receptor bound
              protein 10, a nucleosome assembly protein 1-like 1 (Nap1l1)
              pseudogene and three CpG islands, complete sequence
          Length = 174389

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    acttttatatcctagtgcctttgg 154
              |||||||||| |||||||||||||
Sbjct: 158314 acttttatattctagtgcctttgg 158291
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>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence
          Length = 150889

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gcacatagatcaagaaagag 403
             ||||||||||||||||||||
Sbjct: 19620 gcacatagatcaagaaagag 19639
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>dbj|AK046759.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:B630013F22 product:FYN binding protein,
           full insert sequence
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 attaatcaataatactttta 137
           ||||||||||||||||||||
Sbjct: 417 attaatcaataatactttta 436
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      aaaataggattaatcaataa 129
                ||||||||||||||||||||
Sbjct: 20655780 aaaataggattaatcaataa 20655761
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>gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory receptor pseudogene cluster 1,
              complete sequence, and myosin light chain kinase (MLCK)
              pseudogene, partial sequence
          Length = 106926

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 582    ctccatctacatttcatgtt 601
              ||||||||||||||||||||
Sbjct: 105562 ctccatctacatttcatgtt 105543
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>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    caataatacttttatatcct 143
              ||||||||||||||||||||
Sbjct: 140115 caataatacttttatatcct 140134
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     tggagaaagcgtactattta 306
               ||||||||||||||||||||
Sbjct: 1275497 tggagaaagcgtactattta 1275516
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>dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, map 22, complete
             sequences
          Length = 214189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ttaattagatttaacttgtc 499
             ||||||||||||||||||||
Sbjct: 61658 ttaattagatttaacttgtc 61677
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>dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, map 22, complete
              sequences
          Length = 183533

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    ttaattagatttaacttgtc 499
              ||||||||||||||||||||
Sbjct: 167503 ttaattagatttaacttgtc 167522
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>gb|AY422720.1| Caedibacter taeniospiralis plasmid pKAP298, complete sequence
          Length = 49112

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   aggctctgcaataaagttat 540
             ||||||||||||||||||||
Sbjct: 17681 aggctctgcaataaagttat 17700
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>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence
          Length = 212270

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ggattaatcaataatacttt 135
              ||||||||||||||||||||
Sbjct: 132060 ggattaatcaataatacttt 132079
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     attaatcaataatactttta 137
               ||||||||||||||||||||
Sbjct: 5030177 attaatcaataatactttta 5030158
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>emb|CR932040.2| Medicago truncatula chromosome 5 clone mth2-55h1, COMPLETE SEQUENCE
          Length = 122965

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 534   aagttataattggtatgatt 553
             ||||||||||||||||||||
Sbjct: 86925 aagttataattggtatgatt 86944
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>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete
             sequence
          Length = 223854

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   ccaggaaagccaggactcca 586
             ||||||||||||||||||||
Sbjct: 87844 ccaggaaagccaggactcca 87825


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,832,494
Number of Sequences: 3902068
Number of extensions: 5832494
Number of successful extensions: 116573
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116342
Number of HSP's gapped (non-prelim): 227
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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