ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29k18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ACSL3_HUMAN (O95573) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2... 104 2e-22
2ACSL3_MOUSE (Q9CZW4) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2... 103 3e-22
3ACSL3_RAT (Q63151) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1... 103 4e-22
4ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2... 94 4e-19
5ACSL4_RAT (O35547) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1... 91 2e-18
6ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2... 91 2e-18
7ACSL5_MOUSE (Q8JZR0) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2... 64 4e-10
8ACSL5_RAT (O88813) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1... 63 6e-10
9ACSL6_HUMAN (Q9UKU0) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2... 63 6e-10
10ACSL6_MOUSE (Q91WC3) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2... 61 3e-09
11ACSL5_HUMAN (Q9ULC5) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2... 59 8e-09
12LCF4_YEAST (P47912) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.... 59 1e-08
13ACSL6_RAT (P33124) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1... 57 3e-08
14LCF1_YEAST (P30624) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.... 52 2e-06
15LCF1_SCHPO (O60135) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.... 50 6e-06
16LCF3_YEAST (P39002) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.... 49 1e-05
17FAD11_MYCTU (Q10776) Putative fatty-acid--CoA ligase fadD11 (EC ... 45 2e-04
18LCF2_YEAST (P39518) Long-chain-fatty-acid--CoA ligase 2 (EC 6.2.... 43 6e-04
19CPS_CLOTM (Q02929) Putative sensory transducer protein 31 3.0
20RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2... 31 3.0
21RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2... 31 3.0
22RPOB_CORJK (Q4JT32) DNA-directed RNA polymerase beta chain (EC 2... 31 3.0
23RPOB_GEOKA (Q5L405) DNA-directed RNA polymerase beta chain (EC 2... 31 3.0
24RPOB_CORGL (Q8NT26) DNA-directed RNA polymerase beta chain (EC 2... 31 3.0
25RPOB_BACSK (Q5WLS0) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
26RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
27RPOB_BACHK (Q6HPR6) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
28RPOB_BACCZ (Q63H98) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
29RPOB_BACCR (Q81J48) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
30RPOB_BACC1 (Q73FA4) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
31WDR46_CANFA (Q5TJE7) WD-repeat protein 46 30 4.0
32RPOB_LISMO (Q9RLT9) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
33RPOB_LISMF (Q724F0) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
34RPOB_LISIN (Q92F22) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
35RPOB_LACJO (Q74L95) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
36RPOB_CARHZ (Q3A9Q7) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
37RPOB_SYMTH (Q67JT3) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
38RPOB_BACAN (Q81VT8) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
39ETF2_MCV1 (Q98277) Early transcription factor 82 kDa subunit (VE... 30 5.2
40RPOB4_ENTFC (Q8GCR3) DNA-directed RNA polymerase beta chain (EC ... 30 5.2
41RPOB_LACAC (Q5FM97) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
42RPOB_ANASP (P22703) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
43RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
44RPOB_LACPL (Q88XZ3) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
45RPOB_BACSU (P37870) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
46RPOB_BACLD (Q65PB5) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
47RPOB3_ENTFC (Q8GCR5) DNA-directed RNA polymerase beta chain (EC ... 30 6.7
48RPOB2_ENTFC (Q8GCR4) DNA-directed RNA polymerase beta chain (EC ... 30 6.7
49RPOB1_ENTFC (Q8GCR6) DNA-directed RNA polymerase beta chain (EC ... 30 6.7
50RPOB_ENTFA (Q82Z40) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
51RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2... 29 8.8
52AT8A2_HUMAN (Q9NTI2) Probable phospholipid-transporting ATPase I... 29 8.8 
>ACSL3_HUMAN (O95573) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3)
          Length = 720

 Score =  104 bits (259), Expect = 2e-22
 Identities = 55/120 (45%), Positives = 78/120 (65%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P V+NI  +A+ +HSY +  VV  Q EL + A ++GL  T + +LC   E   E
Sbjct: 599 AALKNLPLVDNICAYANSYHSYVIGFVVPNQKELTELARKKGLKGT-WEELCNSCEMENE 657

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           VL  L++AA    LEKFE P K++L P+PWTPE+GLVT A KLKR+ ++  Y+ D+ ++Y
Sbjct: 658 VLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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>ACSL3_MOUSE (Q9CZW4) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3)
          Length = 720

 Score =  103 bits (258), Expect = 3e-22
 Identities = 54/120 (45%), Positives = 76/120 (63%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P ++NI  +A+ +HSY +  VV  Q EL + A  +G   T + +LC   E   E
Sbjct: 599 AALKNLPLIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFKGT-WEELCNSSEMENE 657

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           VL  L++AA    LEKFE P K++L PDPWTPE+GLVT A KLKR+ ++  Y+ D+ ++Y
Sbjct: 658 VLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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>ACSL3_RAT (Q63151) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3) (Brain
           acyl-CoA synthtase II)
          Length = 720

 Score =  103 bits (257), Expect = 4e-22
 Identities = 54/120 (45%), Positives = 76/120 (63%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P ++NI  +A+ +HSY +  VV  Q EL + A  +G   T + +LC   E   E
Sbjct: 599 AALKNLPLIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFNGT-WEELCNSSEMENE 657

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           VL  L++AA    LEKFE P K++L PDPWTPE+GLVT A KLKR+ ++  Y+ D+ ++Y
Sbjct: 658 VLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4)
          Length = 711

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 50/120 (41%), Positives = 71/120 (59%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P ++NI   A    SY ++ VV  Q  L   A Q+G+  T + D+C       E
Sbjct: 590 AALKNCPLIDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGT-WVDICNNPAMEAE 648

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           +L  + +AA   +LE+FE P KV+L P+PWTPE+GLVT A KLKR+ +R  Y  D+ ++Y
Sbjct: 649 ILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708
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>ACSL4_RAT (O35547) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4)
          Length = 670

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 72/120 (60%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P ++NI   A    SY ++ VV  Q +L   A Q+G+  + + D+C       E
Sbjct: 549 AALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGS-WVDICNNPAMEAE 607

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           +L  + +AA   +LE+FE P KV+L P+PWTPE+GLVT A KLKR+ ++  Y  D+ ++Y
Sbjct: 608 ILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
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>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4)
          Length = 711

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 72/120 (60%)
 Frame = -2

Query: 586 AALAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVE 407
           AAL   P ++NI   A    SY ++ VV  Q +L   A Q+G+  + + D+C       E
Sbjct: 590 AALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGS-WVDICNNPAMEAE 648

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           +L  + +AA   +LE+FE P KV+L P+PWTPE+GLVT A KLKR+ ++  Y  D+ ++Y
Sbjct: 649 ILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708
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>ACSL5_MOUSE (Q8JZR0) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 5) (LACS 5)
          Length = 683

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 34/112 (30%), Positives = 60/112 (53%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKA 383
           V  + +H +   S+ + +VV   + L  +A + G+  + F +LC+ Q     +L  L K 
Sbjct: 568 VLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGS-FEELCKNQCVKEAILEDLQKI 626

Query: 382 AKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
            K+G L+ FE    + + P+P+T E+GL+T  LK KR  + K ++  +  LY
Sbjct: 627 GKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLY 678
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>ACSL5_RAT (O88813) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 5) (LACS 5)
          Length = 683

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 33/109 (30%), Positives = 58/109 (53%)
 Frame = -2

Query: 553 IMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKAAKQ 374
           + +H +   S+ + +VV     L  +A + G+  + F +LCQ Q     +L  L K  K+
Sbjct: 571 VFVHGESLRSFLIGVVVPDPESLPSFAAKIGVKGS-FEELCQNQCVKKAILEDLQKVGKE 629

Query: 373 GRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           G L+ FE    + + P+P++ E+GL+T  LK KR  + K ++  +  LY
Sbjct: 630 GGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLY 678
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>ACSL6_HUMAN (Q9UKU0) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 6) (LACS 6)
          Length = 697

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 31/113 (27%), Positives = 60/113 (53%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKA 383
           V  I +H D   ++ V +VV     +  WA ++G+  T +ADLC  ++    +L  + + 
Sbjct: 583 VAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKRGIEGT-YADLCTNKDLKKAILEDMVRL 641

Query: 382 AKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLYA 224
            K+  L  FE    + +  D ++ ++GL+T  LK KR  +R+ ++  + +LY+
Sbjct: 642 GKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694
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>ACSL6_MOUSE (Q91WC3) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 6) (LACS 6)
          Length = 697

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 31/112 (27%), Positives = 58/112 (51%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKA 383
           V  I +H D   ++ V +VV     +  WA ++G+  T + +LC K+E    +L  +   
Sbjct: 583 VAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKKGIEGT-YQELCMKKELKKAILDDMVML 641

Query: 382 AKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
            K+  L  FE    + +  D ++ ++GL+T  LK KR  +R+ ++  + +LY
Sbjct: 642 GKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693
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>ACSL5_HUMAN (Q9ULC5) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 5) (LACS 5)
          Length = 683

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 36/112 (32%), Positives = 57/112 (50%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKA 383
           V  I +H +   S  V +VV   + L  +A + G+  + F +LCQ Q     +L  L K 
Sbjct: 568 VLQIFVHGESLRSSLVGVVVPDTDVLPSFAAKLGVKGS-FEELCQNQVVREAILEDLQKI 626

Query: 382 AKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
            K+  L+ FE    + L P+P++ E+GL+T  LK KR  + K +   +  LY
Sbjct: 627 GKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLY 678
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>LCF4_YEAST (P47912) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (Fatty acid activator
           4)
          Length = 694

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
 Frame = -2

Query: 571 NPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYT--DFADLCQKQEAVVEVLG 398
           NPYV+NI ++AD      V +VV     L K A++ G+     D      +++    V  
Sbjct: 574 NPYVQNICVYADENKVKPVGIVVPNLGHLSKLAIELGIMVPGEDVESYIHEKKLQDAVCK 633

Query: 397 SLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
            +   AK   L   E    +    + WTPE+GLVT+A KLKR  I    + D+ ++Y
Sbjct: 634 DMLSTAKSQGLNGIELLCGIVFFEEEWTPENGLVTSAQKLKRRDILAAVKPDVERVY 690
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>ACSL6_RAT (P33124) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 6) (LACS 6)
           (Long-chain-fatty-acid--CoA ligase, brain isozyme)
          Length = 697

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 29/113 (25%), Positives = 59/113 (52%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKA 383
           V  I +H D   ++ V +VV     +  WA ++G+   ++ +LC+ +E    +L  +   
Sbjct: 583 VAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVML 641

Query: 382 AKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLYA 224
            K+  L  FE    + +  D ++ ++GL+T  LK KR  +R+ ++  + +LY+
Sbjct: 642 GKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694
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>LCF1_YEAST (P30624) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 1) (Fatty acid activator
           1)
          Length = 700

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
 Frame = -2

Query: 571 NPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGL-----AYTDFADLCQKQEAVVE 407
           N YV NI ++AD   +  V ++V     L K A + G+     +  +  +  +  + +  
Sbjct: 578 NEYVANICVYADQSKTKPVGIIVPNHAPLTKLAKKLGIMEQKDSSINIENYLEDAKLIKA 637

Query: 406 VLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
           V   L K  K   L   E  A +      WTP++G VT+A KLKR+ I    +D +  +Y
Sbjct: 638 VYSDLLKTGKDQGLVGIELLAGIVFFDGEWTPQNGFVTSAQKLKRKDILNAVKDKVDAVY 697

Query: 226 A 224
           +
Sbjct: 698 S 698
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>LCF1_SCHPO (O60135) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 1) (Fatty acid activator
           1)
          Length = 676

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = -2

Query: 562 VENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTD--FADLCQKQEAVVEVLGSLT 389
           V NI ++AD      +A++V  +  + K A +Q     D  + ++C  ++    V   L 
Sbjct: 561 VSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSPDASWEEVCHNKKVRQLVYDDLI 620

Query: 388 KAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLYA 224
           +  +       E    V L+P  +TPE+GLVTAA KL+R  I   ++ ++   YA
Sbjct: 621 RIGRSHHFANIELIQNVVLVPIEFTPENGLVTAAQKLQRRKILDRFKKEIDAAYA 675
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>LCF3_YEAST (P39002) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (Fatty acid activator
           3)
          Length = 694

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = -2

Query: 571 NPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYT--DFADLCQKQEAVVEVLG 398
           N YV+NI ++AD      V +VV     L K+A++  +     D  +    +     V  
Sbjct: 574 NSYVKNICVYADESRVKPVGIVVPNPGPLSKFAVKLRIMKKGEDIENYIHDKALRNAVFK 633

Query: 397 SLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLY 227
            +   AK   L   E    +    + WTPE+G VT+A KLKR  I    + ++ ++Y
Sbjct: 634 EMIATAKSQGLVGIELLCGIVFFDEEWTPENGFVTSAQKLKRREILAAVKSEVERVY 690
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>FAD11_MYCTU (Q10776) Putative fatty-acid--CoA ligase fadD11 (EC 6.2.1.-)|
           (Acyl-CoA synthetase)
          Length = 571

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 33/119 (27%), Positives = 55/119 (46%)
 Frame = -2

Query: 580 LAMNPYVENIMIHADPFHSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVL 401
           LA  P V  +M   D   +Y  AL+V   + L  +A Q+GL  +  A L    E +  + 
Sbjct: 438 LAACPMVGVMMAIGDG-RTYNTALLVFDADSLGPYAAQRGLDASPAA-LAADPEVIARIA 495

Query: 400 GSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKTYEDDLAQLYA 224
             + +     +L + E   + +++P  W P    +T  +KLKR  I   Y  ++ +LYA
Sbjct: 496 AGVAEG--NAKLSRVEQIKRFRILPTLWEPGGDEITLTMKLKRRRIAAKYSAEIEELYA 552
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>LCF2_YEAST (P39518) Long-chain-fatty-acid--CoA ligase 2 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 2) (Fatty acid activator
           2)
          Length = 744

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
 Frame = -2

Query: 580 LAMNPYVENIMIHADPFHSYCVALV-----------VAAQNELEKWALQQGLAYTDFADL 434
           L+  PY+  I +  DP  ++ V +V            A   E++ W  +  +      +L
Sbjct: 612 LSSCPYITQIFVFGDPLKTFLVGIVGVDVDAAQPILAAKHPEVKTWTKEVLVE-----NL 666

Query: 433 CQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWTPESGLVTAALKLKREVIRKT 254
            + ++   E L  + K      L+ FE    +K+  +P T E  +VT   K+KR    K 
Sbjct: 667 NRNKKLRKEFLNKINKCTDG--LQGFEKLHNIKVGLEPLTLEDDVVTPTFKIKRAKASKF 724

Query: 253 YEDDLAQLYA 224
           ++D L QLYA
Sbjct: 725 FKDTLDQLYA 734
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>CPS_CLOTM (Q02929) Putative sensory transducer protein|
          Length = 557

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 267 TSLLSLSAAVTRPDSGVHGSGISLTLAGVSNFSSRPCFAA 386
           T++L+L+AAV    +G HG G ++    V N ++R   AA
Sbjct: 345 TNILALNAAVEAARAGQHGKGFAVVAEEVRNLAARSANAA 384
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>RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1171

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WA+Q  G AYT    L  K + VV            GR++ +E   K + +PDP  
Sbjct: 1065 EMEVWAMQAYGAAYTLQELLTIKSDDVV------------GRVKVYEAIVKGENIPDPGI 1112

Query: 313  PES 305
            PES
Sbjct: 1113 PES 1115
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>RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1175

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WA+Q  G AYT    L  K + VV            GR++ +E   K + +PDP  
Sbjct: 1068 EMEVWAMQAYGAAYTLQELLTIKSDDVV------------GRVKVYEAIVKGENIPDPGI 1115

Query: 313  PES 305
            PES
Sbjct: 1116 PES 1118
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>RPOB_CORJK (Q4JT32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1164

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WA+Q  G AYT    L  K + VV            GR++ +E   K + +PDP  
Sbjct: 1055 EMEVWAMQAYGAAYTLQELLTIKSDDVV------------GRVKVYEAIVKGENIPDPGI 1102

Query: 313  PES 305
            PES
Sbjct: 1103 PES 1105
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>RPOB_GEOKA (Q5L405) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1190

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1077 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENIPEPGV 1124

Query: 313  PES-----------GL-VTAALKLKREVIRKTYEDD 242
            PES           G+ VT     ++EV  + ++DD
Sbjct: 1125 PESFKVLIKELQSLGMDVTILTSDEQEVNMENFDDD 1160
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>RPOB_CORGL (Q8NT26) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1165

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WA+Q  G AYT    L  K + VV            GR++ +E   K + +PDP  
Sbjct: 1059 EMEVWAMQAYGAAYTLQELLTIKSDDVV------------GRVKVYEAIVKGENIPDPGI 1106

Query: 313  PES 305
            PES
Sbjct: 1107 PES 1109
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>RPOB_BACSK (Q5WLS0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1180

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1078 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1125

Query: 313  PES 305
            PES
Sbjct: 1126 PES 1128
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>RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1180

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1078 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1125

Query: 313  PES 305
            PES
Sbjct: 1126 PES 1128
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>RPOB_BACHK (Q6HPR6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1177

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_BACCZ (Q63H98) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1177

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_BACCR (Q81J48) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1177

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_BACC1 (Q73FA4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1177

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>WDR46_CANFA (Q5TJE7) WD-repeat protein 46|
          Length = 612

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -2

Query: 499 AQNELEKWALQQGLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEK--FETPAKVKLMP 326
           +Q + ++W ++  L       +C    A+ EV     +  K+ R+E+  ++  AK    P
Sbjct: 494 SQKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQEKKERIERLGYDPEAKAPFQP 553

Query: 325 DPWTPESGLVTAALKLKREVIRKTYEDDLAQ 233
            P         + +K +R+V+ K + D + Q
Sbjct: 554 KPKQKGRSSTASLVKRRRKVMDKEHRDKVRQ 584
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>RPOB_LISMO (Q9RLT9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1184

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVV------------GRVKTYEAIVKGESVPEPGV 1125

Query: 313  PES 305
            PES
Sbjct: 1126 PES 1128
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>RPOB_LISMF (Q724F0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1184

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVV------------GRVKTYEAIVKGESVPEPGV 1125

Query: 313  PES 305
            PES
Sbjct: 1126 PES 1128
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>RPOB_LISIN (Q92F22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1184

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVV------------GRVKTYEAIVKGESVPEPGV 1125

Query: 313  PES 305
            PES
Sbjct: 1126 PES 1128
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>RPOB_LACJO (Q74L95) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1209

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1074 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKAYEAIVKGERIPKPGV 1121

Query: 313  PES 305
            PES
Sbjct: 1122 PES 1124
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>RPOB_CARHZ (Q3A9Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1132

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1004 EMEVWALEAYGAAYTLQEILTIKSDDVV------------GRVKTYEAIVKGENIPEPGV 1051

Query: 313  PES 305
            PES
Sbjct: 1052 PES 1054
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>RPOB_SYMTH (Q67JT3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1250

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P+P  
Sbjct: 1042 EMEVWALEAYGAAYTLQELLTVKSDDVV------------GRVKTYEAIVKGENVPEPGV 1089

Query: 313  PES 305
            PES
Sbjct: 1090 PES 1092
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>RPOB_BACAN (Q81VT8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1177

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + V+            GR++ +E   K + +P+P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTVKSDDVI------------GRVKTYEAIVKGENVPEPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>ETF2_MCV1 (Q98277) Early transcription factor 82 kDa subunit (VETF large|
           subunit)
          Length = 707

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 533 FSQLLCCTCGSSTERAGKVGIAARTCIHRFR*FVPEARGCCRSAWIFNKGCKARTTGE 360
           FS+ L     + TE  G  G+AA+     F+  V EAR      W+ N   +   TGE
Sbjct: 633 FSEPLSTRYVAFTENVGTAGVAAKYFAPVFKYVVTEARELFIKTWLLNVMMQLGLTGE 690
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>RPOB4_ENTFC (Q8GCR3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1208

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTSKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_LACAC (Q5FM97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1213

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1075 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKAYEAIVKGERIPKPGV 1122

Query: 313  PES 305
            PES
Sbjct: 1123 PES 1125
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>RPOB_ANASP (P22703) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1131

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT            ++ L ++     QGR E      K K +P P T
Sbjct: 1019 EMEVWALEAFGAAYT------------LQELLTVKSDDMQGRNEALNAIVKGKAIPRPGT 1066

Query: 313  PES 305
            PES
Sbjct: 1067 PES 1069
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>RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1197

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1074 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1121

Query: 313  PES 305
            PES
Sbjct: 1122 PES 1124
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>RPOB_LACPL (Q88XZ3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1204

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1124

Query: 313  PES 305
            PES
Sbjct: 1125 PES 1127
to top
>RPOB_BACSU (P37870) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1193

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K   +P+P  
Sbjct: 1077 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGDNVPEPGV 1124

Query: 313  PES 305
            PES
Sbjct: 1125 PES 1127
to top
>RPOB_BACLD (Q65PB5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1193

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K   +P+P  
Sbjct: 1077 EMEVWALEAYGAAYTLQEILTVKSDDVV------------GRVKTYEAIVKGDNVPEPGV 1124

Query: 313  PES 305
            PES
Sbjct: 1125 PES 1127
to top
>RPOB3_ENTFC (Q8GCR5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1208

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
to top
>RPOB2_ENTFC (Q8GCR4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1208

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
to top
>RPOB1_ENTFC (Q8GCR6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1208

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_ENTFA (Q82Z40) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1207

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT    L  K + VV            GR++ +E   K + +P P  
Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVV------------GRVKTYEAIVKGEPIPKPGV 1123

Query: 313  PES 305
            PES
Sbjct: 1124 PES 1126
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>RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1095

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490  ELEKWALQQ-GLAYTDFADLCQKQEAVVEVLGSLTKAAKQGRLEKFETPAKVKLMPDPWT 314
            E+E WAL+  G AYT            ++ L ++     QGR E   +  K K +P P T
Sbjct: 993  EMEVWALEAYGAAYT------------LQELLTVKSDDMQGRNEALNSIVKGKPIPRPGT 1040

Query: 313  PES 305
            PES
Sbjct: 1041 PES 1043
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>AT8A2_HUMAN (Q9NTI2) Probable phospholipid-transporting ATPase IB (EC 3.6.3.1)|
           (ATPase class I type 8A member 2) (ML-1)
          Length = 1148

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = -2

Query: 565 YVENIMIHADPF-----HSYCVALVVAAQNELEKWALQQGLAYTDFADLCQKQEAVVEVL 401
           Y+E  + H + F      + CVA    ++NE E+W      A T   D  Q+ E   E++
Sbjct: 568 YMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASTILKDRAQRLEECYEII 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,370,516
Number of Sequences: 219361
Number of extensions: 1602013
Number of successful extensions: 4537
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 4409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4526
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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