ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29k10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009599.1| Triticum aestivum clone wre1n.pk0076.b10:fis, ful... 563 e-157
2gb|AY104116.1| Zea mays PCO087623 mRNA sequence 212 1e-51
3gb|AF429386.1|AF429386 Hevea brasiliensis mevalonate disphosphat... 90 1e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
5dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
6ref|NM_115285.1| Arabidopsis thaliana ATP binding / diphosphomev... 84 6e-13
7gb|AY087654.1| Arabidopsis thaliana clone 37377 mRNA, complete s... 84 6e-13
8gb|BT013122.1| Lycopersicon esculentum clone 114412R, mRNA sequence 70 1e-08
9ref|XM_637051.1| Dictyostelium discoideum hypothetical protein (... 46 0.14
10emb|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, B... 46 0.14
11gb|AC149361.2| Phakopsora pachyrhizi clone JGIAFNA-41F19, comple... 44 0.55
12gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, comple... 44 0.55
13emb|X96864.1|GMPURD G.max mRNA for glycinamide ribonucleotide sy... 44 0.55
14emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 44 0.55
15gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, comple... 44 0.55
16emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on ch... 44 0.55
17ref|NM_129427.3| Arabidopsis thaliana MVD1 AT2G38700 (MVD1) mRNA... 42 2.2
18gb|BC008526.1| Mus musculus mevalonate (diphospho) decarboxylase... 42 2.2
19ref|NM_138656.1| Mus musculus mevalonate (diphospho) decarboxyla... 42 2.2
20gb|BT008769.1| Arabidopsis thaliana At2g38700 gene, complete cds 42 2.2
21emb|Y14325.1|ATY14325 Arabidopsis thaliana mRNA for mevalonate d... 42 2.2
22emb|AJ309922.1|MMU309922 Mus musculus mRNA for diphosphomevalona... 42 2.2
23gb|AY034888.1| Tortula ruralis aldehyde dehydrogenase Aldh21A1 (... 42 2.2
24dbj|AK134803.1| Mus musculus adult male medulla oblongata cDNA, ... 42 2.2
25dbj|AK154883.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.2
26dbj|AK153439.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 2.2
27dbj|AK170773.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.2
28dbj|AK170007.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.2
29dbj|AK089354.1| Mus musculus B6-derived CD11 +ve dendritic cells... 42 2.2
30emb|BX819898.1|CNS0A83Y Arabidopsis thaliana Full-length cDNA Co... 42 2.2
31gb|AY087442.1| Arabidopsis thaliana clone 35493 mRNA, complete s... 42 2.2
32gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, comp... 42 2.2
33emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 i... 42 2.2
34gb|AC160389.4| Mus musculus chromosome 7, clone RP23-257G13, com... 40 8.6
35ref|XM_635347.1| Dictyostelium discoideum hypothetical protein (... 40 8.6
36gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 8.6
37gb|AC102008.9| Mus musculus chromosome 7, clone RP24-502L8, comp... 40 8.6
38gb|AC126272.3| Mus musculus BAC clone RP23-48P22 from chromosome... 40 8.6
39gb|AC126444.3| Mus musculus BAC clone RP24-136A8 from chromosome... 40 8.6
40emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on ch... 40 8.6
41gb|AC153511.4| Mus musculus 10 BAC RP23-102N12 (Roswell Park Can... 40 8.6
42emb|BX537300.6| Zebrafish DNA sequence from clone CH211-259K10 i... 40 8.6
43gb|AC068189.11| Homo sapiens chromosome 8, clone RP11-320N21, co... 40 8.6
44gb|AC107082.3| Homo sapiens BAC clone RP11-807A15 from 2, comple... 40 8.6
45gb|AC087752.12| Homo sapiens chromosome 8, clone RP11-347C18, co... 40 8.6
46dbj|AK045135.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 8.6
47gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Canc... 40 8.6
48gb|AC023668.5| Homo sapiens BAC clone RP11-255I17 from 2, comple... 40 8.6
49dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.6
50gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, co... 40 8.6
51gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 40 8.6
52emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encepha... 40 8.6
53gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, com... 40 8.6
54dbj|AP003552.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.6 
>gb|BT009599.1| Triticum aestivum clone wre1n.pk0076.b10:fis, full insert mRNA
           sequence
          Length = 645

 Score =  563 bits (284), Expect = e-157
 Identities = 350/372 (94%)
 Strand = Plus / Minus

                                                                       
Query: 194 atcgtcgtccaaaattacactcctttcgcaagccccgtggctgaatcaatcaaggagtgg 253
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||
Sbjct: 377 atcgtcgtccaaaattacactcctttcgcaagccctgtggctgaatcaatcaaggcatgg 318

                                                                       
Query: 254 ctctcatcgacaagaacttttgggccggccccaggcctactgcagatgaagtagctaaca 313
           |||||||||   |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 317 ctctcatcggtgagaacttttgggccggccccaggcctgctacagatgaagtagctaaca 258

                                                                       
Query: 314 tcacccttgaatttttggttttgggtcttcatctctggaggcggtggaagggcctcgaca 373
           ||||| ||||||||||||||| | |  |||||||| ||||||| ||||||||||||||||
Sbjct: 257 tcacctttgaatttttggtttggagctttcatctccggaggcgctggaagggcctcgaca 198

                                                                       
Query: 374 tcggctatggactgcaatccggcatcgcttaggatcgatttatcgccgagcatatagctg 433
           ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcggctatggattgcaaaccagcatcgcttaggatcgatttatcgccgagcatatagctg 138

                                                                       
Query: 434 tccaagtcattctcctgtggggggaaagtgtataaaagcctctgaaggagaagggtggca 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 137 tccaagtcattctcctgtggggggaaagtgtataaaagcctctgaaggagaagggtgcca 78

                                                                       
Query: 494 gttttgcggtttcgtgctattaggacagcgttaggcccagcatcaaatgtgtaggcaacc 553
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 77  gttttgcggttccgtgctattaagacagcgttaggcccagcatcaaatgtgtaggcaacc 18

                       
Query: 554 tgtggggttcct 565
           ||||| ||||||
Sbjct: 17  tgtggtgttcct 6



 Score =  244 bits (123), Expect = 3e-61
 Identities = 148/155 (95%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttttattgaagaaatacacatgttctttaagncggctacaacagtcagggacaaaat 60
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 552 aacttttattgaagaaatatacatgttctttaag-cggctacaacagtcagggacaaaat 494

                                                                       
Query: 61  gatgggaatggtacaagatcaaaggtacagtacaagatcaaaatgataaaagtactgagt 120
           ||||| ||| |||||||||| |||||||||||||||||||||||||  ||||||||||||
Sbjct: 493 gatggaaatagtacaagatcgaaggtacagtacaagatcaaaatgacgaaagtactgagt 434

                                              
Query: 121 gtacaacaacgtgacaattctacattaatctcaac 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 433 gtacaacaacgtgacaattctacattaatctcaac 399
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>gb|AY104116.1| Zea mays PCO087623 mRNA sequence
          Length = 1709

 Score =  212 bits (107), Expect = 1e-51
 Identities = 284/343 (82%)
 Strand = Plus / Minus

                                                                        
Query: 288  gcctactgcagatgaagtagctaacatcacccttgaatttttggttttgggtcttcatct 347
            |||| ||||||||||||||||||||||| ||||||||||| || |   |  ||||| |||
Sbjct: 1426 gcctgctgcagatgaagtagctaacatcgcccttgaatttctgatccggtatcttcgtct 1367

                                                                        
Query: 348  ctggaggcggtggaagggcctcgacatcggctatggactgcaatccggcatcgcttagga 407
            ||||||| | |||||| |||||||| ||    ||||| |||||||||||  | | ||| |
Sbjct: 1366 ctggaggtgctggaagagcctcgacgtctttcatggaatgcaatccggcgacacctagaa 1307

                                                                        
Query: 408  tcgatttatcgccgagcatatagctgtccaagtcattctcctgtggggggaaagtgtata 467
            ||||||||||||| | || |||||||  ||| ||||| |||||||| ||||||  |||||
Sbjct: 1306 tcgatttatcgccaaccagatagctgctcaaatcattatcctgtggagggaaatagtata 1247

                                                                        
Query: 468  aaagcctctgaaggagaagggtggcagttttgcggtttcgtgctattaggacagcgttag 527
              ||| |||| |||||| | |  |||||||| |||||| |||| ||||| |||||||| |
Sbjct: 1246 ggagcttctggaggagatgtgctgcagttttacggttttgtgcgattagaacagcgtttg 1187

                                                                        
Query: 528  gcccagcatcaaatgtgtaggcaacctgtggggttccttctgagtgattccacttttcca 587
            |||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct: 1186 gcccagcatcgaaggtgtaagcgacctgtggggttccttctgagtggttccatttttcca 1127

                                                       
Query: 588  caaggctaattatcctgtgtgatgtatcgttcatgtagaagat 630
            ||||||||||||| | |||||| || || ||||| ||||||||
Sbjct: 1126 caaggctaattattcggtgtgacgtgtcattcatatagaagat 1084
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>gb|AF429386.1|AF429386 Hevea brasiliensis mevalonate disphosphate decarboxylase mRNA,
            complete cds
          Length = 1697

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Minus

                                                                        
Query: 507  gtgctattaggacagcgttaggcccagcatcaaatgtgtaggcaacctgtggggttcctt 566
            |||| ||||| || || ||||||||||||||||| || || || ||||| || |||||| 
Sbjct: 1023 gtgcaattagaactgcattaggcccagcatcaaaagtataagccacctgaggtgttccta 964

                                                                        
Query: 567  ctgagtgattccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtaga 626
            | ||  ||||||| ||||| |||  ||| |||||||||||||||||||||||||||||||
Sbjct: 963  cagaacgattccatttttcaacacagctgattatcctgtgtgatgtatcgttcatgtaga 904

             
Query: 627  a 627
            |
Sbjct: 903  a 903
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                      
Query: 551    acctgtggggttccttctgagtgattccacttttccacaaggctaattatcctgtg 606
              |||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 497916 acctgtggggttccttctgactggttccacttctccacaaggctaattatcctgtg 497971



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                          
Query: 474    tctgaaggagaagggtggcagttttgcggtttcgtgctattaggacagcgttaggcccag 533
              |||||||||||| ||| ||| ||||||||||| |||| ||||||||||| || |||||||
Sbjct: 497274 tctgaaggagaatggttgcatttttgcggtttggtgcgattaggacagcattgggcccag 497333

                                    
Query: 534    catcaaatgtgtaggcaacctg 555
              |||| || ||||| ||||||||
Sbjct: 497334 catcgaaggtgtaagcaacctg 497355



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 135/166 (81%)
 Strand = Plus / Plus

                                                                          
Query: 268    aacttttgggccggccccaggcctactgcagatgaagtagctaacatcacccttgaattt 327
              |||||||||||| || ||| |||| || |||||||||||||| ||||| |||||||||||
Sbjct: 496996 aacttttgggccagctccaagcctgctacagatgaagtagctcacatctcccttgaattt 497055

                                                                          
Query: 328    ttggttttgggtcttcatctctggaggcggtggaagggcctcgacatcggctatggactg 387
              |||| |  |  ||||| |||| | ||| | ||| |||||||| |||||  |||| || | 
Sbjct: 497056 ttggctcggcatcttcgtctcggcaggagctgggagggcctccacatcttctatcgattt 497115

                                                            
Query: 388    caatccggcatcgcttaggatcgatttatcgccgagcatatagctg 433
              || ||| ||||||||||| ||||| || ||||| | ||||||||||
Sbjct: 497116 cagtccagcatcgcttagaatcgacttgtcgccaaccatatagctg 497161



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 601    cctgtgtgatgtatcgttcatgtagaagat 630
              ||||||||||||||||||||| ||||||||
Sbjct: 498053 cctgtgtgatgtatcgttcatatagaagat 498082
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                     
Query: 551   acctgtggggttccttctgagtgattccacttttccacaaggctaattatcctgtg 606
             |||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 94157 acctgtggggttccttctgactggttccacttctccacaaggctaattatcctgtg 94212



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                         
Query: 474   tctgaaggagaagggtggcagttttgcggtttcgtgctattaggacagcgttaggcccag 533
             |||||||||||| ||| ||| ||||||||||| |||| ||||||||||| || |||||||
Sbjct: 93515 tctgaaggagaatggttgcatttttgcggtttggtgcgattaggacagcattgggcccag 93574

                                   
Query: 534   catcaaatgtgtaggcaacctg 555
             |||| || ||||| ||||||||
Sbjct: 93575 catcgaaggtgtaagcaacctg 93596



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 135/166 (81%)
 Strand = Plus / Plus

                                                                         
Query: 268   aacttttgggccggccccaggcctactgcagatgaagtagctaacatcacccttgaattt 327
             |||||||||||| || ||| |||| || |||||||||||||| ||||| |||||||||||
Sbjct: 93237 aacttttgggccagctccaagcctgctacagatgaagtagctcacatctcccttgaattt 93296

                                                                         
Query: 328   ttggttttgggtcttcatctctggaggcggtggaagggcctcgacatcggctatggactg 387
             |||| |  |  ||||| |||| | ||| | ||| |||||||| |||||  |||| || | 
Sbjct: 93297 ttggctcggcatcttcgtctcggcaggagctgggagggcctccacatcttctatcgattt 93356

                                                           
Query: 388   caatccggcatcgcttaggatcgatttatcgccgagcatatagctg 433
             || ||| ||||||||||| ||||| || ||||| | ||||||||||
Sbjct: 93357 cagtccagcatcgcttagaatcgacttgtcgccaaccatatagctg 93402



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 601   cctgtgtgatgtatcgttcatgtagaagat 630
             ||||||||||||||||||||| ||||||||
Sbjct: 94294 cctgtgtgatgtatcgttcatatagaagat 94323
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>ref|NM_115285.1| Arabidopsis thaliana ATP binding / diphosphomevalonate
           decarboxylase/ kinase AT3G54250 mRNA, complete cds
          Length = 1464

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                       
Query: 530 ccagcatcaaatgtgtaggcaacctgtggggttccttctgagtgattccacttttccaca 589
           ||||||||||||||||| ||||||||||| || ||||| ||  | ||||||||||| || 
Sbjct: 979 ccagcatcaaatgtgtaagcaacctgtggtgtcccttcagaacggttccacttttcaact 920

                                                 
Query: 590 aggctaattatcctgtgtgatgtatcgttcatgtagaa 627
           | ||||||||| |||||||| || || |||||||||||
Sbjct: 919 aagctaattattctgtgtgaagtgtcattcatgtagaa 882
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>gb|AY087654.1| Arabidopsis thaliana clone 37377 mRNA, complete sequence
          Length = 1464

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                       
Query: 530 ccagcatcaaatgtgtaggcaacctgtggggttccttctgagtgattccacttttccaca 589
           ||||||||||||||||| ||||||||||| || ||||| ||  | ||||||||||| || 
Sbjct: 979 ccagcatcaaatgtgtaagcaacctgtggtgtcccttcagaacggttccacttttcaact 920

                                                 
Query: 590 aggctaattatcctgtgtgatgtatcgttcatgtagaa 627
           | ||||||||| |||||||| || || |||||||||||
Sbjct: 919 aagctaattattctgtgtgaagtgtcattcatgtagaa 882
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>gb|BT013122.1| Lycopersicon esculentum clone 114412R, mRNA sequence
          Length = 1709

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 128/159 (80%)
 Strand = Plus / Minus

                                                                        
Query: 469  aagcctctgaaggagaagggtggcagttttgcggtttcgtgctattaggacagcgttagg 528
            |||||||||||| | ||| |||||||  || | ||| || || ||||| ||||| || ||
Sbjct: 1197 aagcctctgaagcataagtgtggcagcctttctgttacgcgcaattagaacagcatttgg 1138

                                                                        
Query: 529  cccagcatcaaatgtgtaggcaacctgtggggttccttctgagtgattccacttttccac 588
            ||||||||| || ||||| ||||||||||| ||||||||||   | ||||| || || ||
Sbjct: 1137 cccagcatcgaaggtgtatgcaacctgtggagttccttctgcacggttccatttctcgac 1078

                                                   
Query: 589  aaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
            |  |||||||| ||| || ||||| || |||||||||||
Sbjct: 1077 acagctaattaccctatgagatgtgtcattcatgtagaa 1039
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>ref|XM_637051.1| Dictyostelium discoideum hypothetical protein (DDB0218058), partial
           mRNA
          Length = 1176

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 520 agcgttaggcccagcatcaaatgtgtaggca 550
           |||||| || |||||||||||||||||||||
Sbjct: 888 agcgttggggccagcatcaaatgtgtaggca 858
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>emb|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22
          Length = 100285

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 530   ccagcatcaaatgtgtaggcaacctgt 556
             ||||||||||||||||| |||||||||
Sbjct: 67999 ccagcatcaaatgtgtaagcaacctgt 68025
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>gb|AC149361.2| Phakopsora pachyrhizi clone JGIAFNA-41F19, complete sequence
          Length = 35721

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 521 gcgttaggcccagcatcaaatgtgtaggca 550
           ||||||||||| |||||||| |||||||||
Sbjct: 117 gcgttaggcccggcatcaaaggtgtaggca 88
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>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence
          Length = 181442

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 518   acagcgttaggcccagcatcaaatgtgtaggcaacctg 555
             |||||||| || ||||||||||||||||| || |||||
Sbjct: 35523 acagcgttggggccagcatcaaatgtgtatgccacctg 35560
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>emb|X96864.1|GMPURD G.max mRNA for glycinamide ribonucleotide synthetase
          Length = 1524

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1    aacttttattgaagaaatacac 22
            ||||||||||||||||||||||
Sbjct: 1493 aacttttattgaagaaatacac 1472
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 334     ttgggtcttcatctctggaggc 355
               ||||||||||||||||||||||
Sbjct: 2332806 ttgggtcttcatctctggaggc 2332785
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>gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, complete sequence
          Length = 182092

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   atcacccttgaatttttggttt 334
             ||||||||||||||||||||||
Sbjct: 59642 atcacccttgaatttttggttt 59663
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>emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on chromosome 13, complete
              sequence
          Length = 221647

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 518    acagcgttaggcccagcatcaaatgtgtaggcaacctg 555
              |||||||| || ||||||||||||||||| || |||||
Sbjct: 204412 acagcgttggggccagcatcaaatgtgtatgccacctg 204449
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>ref|NM_129427.3| Arabidopsis thaliana MVD1 AT2G38700 (MVD1) mRNA, complete cds
          Length = 1621

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 575  ttccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
            ||||||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct: 1050 ttccacttttcaactaagctgattatcctgtgggaggtgtcattcatgtagaa 998
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>gb|BC008526.1| Mus musculus mevalonate (diphospho) decarboxylase, mRNA (cDNA clone
           MGC:6640 IMAGE:3495424), complete cds
          Length = 1767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 959 acagcgttggggccagcatcaaatgtgta 931
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>ref|NM_138656.1| Mus musculus mevalonate (diphospho) decarboxylase (Mvd), mRNA
          Length = 1767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 959 acagcgttggggccagcatcaaatgtgta 931
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>gb|BT008769.1| Arabidopsis thaliana At2g38700 gene, complete cds
          Length = 1239

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 575 ttccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
           ||||||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct: 890 ttccacttttcaactaagctgattatcctgtgggaggtgtcattcatgtagaa 838
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>emb|Y14325.1|ATY14325 Arabidopsis thaliana mRNA for mevalonate diphosphate decarboxylase
          Length = 1694

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 575  ttccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
            ||||||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct: 1007 ttccacttttcaactaagctgattatcctgtgggaggtgtcattcatgtagaa 955
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>emb|AJ309922.1|MMU309922 Mus musculus mRNA for diphosphomevalonate decarboxylase (MVD gene)
          Length = 1713

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 948 acagcgttggggccagcatcaaatgtgta 920
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>gb|AY034888.1| Tortula ruralis aldehyde dehydrogenase Aldh21A1 (RNP123) mRNA,
            complete cds
          Length = 1695

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 379  tatggactgcaatccggcatc 399
            |||||||||||||||||||||
Sbjct: 1331 tatggactgcaatccggcatc 1351
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>dbj|AK134803.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330570K24 product:mevalonate
           (diphospho) decarboxylase, full insert sequence
          Length = 1746

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 980 acagcgttggggccagcatcaaatgtgta 952
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>dbj|AK154883.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630110I07
           product:mevalonate (diphospho) decarboxylase, full
           insert sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 993 acagcgttggggccagcatcaaatgtgta 965
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>dbj|AK153439.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830161I03 product:mevalonate (diphospho)
            decarboxylase, full insert sequence
          Length = 1834

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 518  acagcgttaggcccagcatcaaatgtgta 546
            |||||||| || |||||||||||||||||
Sbjct: 1069 acagcgttggggccagcatcaaatgtgta 1041
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>dbj|AK170773.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630119E08
           product:mevalonate (diphospho) decarboxylase, full
           insert sequence
          Length = 1470

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 987 acagcgttggggccagcatcaaatgtgta 959
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>dbj|AK170007.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630007P09
           product:mevalonate (diphospho) decarboxylase, full
           insert sequence
          Length = 1414

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 930 acagcgttggggccagcatcaaatgtgta 902
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>dbj|AK089354.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730013E20
           product:DIPHOSPHOMEVALONATE DECARBOXYLASE homolog [Mus
           musculus], full insert sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 518 acagcgttaggcccagcatcaaatgtgta 546
           |||||||| || |||||||||||||||||
Sbjct: 993 acagcgttggggccagcatcaaatgtgta 965
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>emb|BX819898.1|CNS0A83Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS45ZB07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1609

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 575  ttccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
            ||||||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct: 1051 ttccacttttcaactaagctgattatcctgtgggaggtgtcattcatgtagaa 999
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>gb|AY087442.1| Arabidopsis thaliana clone 35493 mRNA, complete sequence
          Length = 1541

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 575 ttccacttttccacaaggctaattatcctgtgtgatgtatcgttcatgtagaa 627
           ||||||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct: 985 ttccacttttcaactaagctgattatcctgtgggaggtgtcattcatgtagaa 933
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>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence
          Length = 245367

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    tctacattaatctcaacacca 159
              |||||||||||||||||||||
Sbjct: 194174 tctacattaatctcaacacca 194194
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>emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 in linkage group 17,
             complete sequence
          Length = 178951

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 319   cttgaatttttggttttgggt 339
             |||||||||||||||||||||
Sbjct: 76578 cttgaatttttggttttgggt 76598
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>gb|AC160389.4| Mus musculus chromosome 7, clone RP23-257G13, complete sequence
          Length = 237741

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aacttttattgaagaaatac 20
              ||||||||||||||||||||
Sbjct: 140266 aacttttattgaagaaatac 140247
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>ref|XM_635347.1| Dictyostelium discoideum hypothetical protein (DDB0205122), partial
            mRNA
          Length = 5256

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   acaagatcaaaatgataaaa 111
            ||||||||||||||||||||
Sbjct: 3303 acaagatcaaaatgataaaa 3322
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     tggaggcggtggaagggcct 368
               ||||||||||||||||||||
Sbjct: 2156981 tggaggcggtggaagggcct 2156962
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>gb|AC102008.9| Mus musculus chromosome 7, clone RP24-502L8, complete sequence
          Length = 194538

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aacttttattgaagaaatac 20
             ||||||||||||||||||||
Sbjct: 12802 aacttttattgaagaaatac 12783
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>gb|AC126272.3| Mus musculus BAC clone RP23-48P22 from chromosome 14, complete sequence
          Length = 191606

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tacaacagtcagggacaaaa 59
             ||||||||||||||||||||
Sbjct: 41319 tacaacagtcagggacaaaa 41300
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>gb|AC126444.3| Mus musculus BAC clone RP24-136A8 from chromosome 14, complete sequence
          Length = 141017

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     tacaacagtcagggacaaaa 59
              ||||||||||||||||||||
Sbjct: 110150 tacaacagtcagggacaaaa 110131
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>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part
              of a novel gene and the 5' end of a novel gene, complete
              sequence
          Length = 170326

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     gaaatacacatgttctttaa 33
              ||||||||||||||||||||
Sbjct: 109713 gaaatacacatgttctttaa 109732
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>gb|AC153511.4| Mus musculus 10 BAC RP23-102N12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196715

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tattgaagaaatacacatgt 26
              ||||||||||||||||||||
Sbjct: 102248 tattgaagaaatacacatgt 102229
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>emb|BX537300.6| Zebrafish DNA sequence from clone CH211-259K10 in linkage group 5,
             complete sequence
          Length = 23885

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    caaaatgatgggaatggtac 74
             ||||||||||||||||||||
Sbjct: 23207 caaaatgatgggaatggtac 23226
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>gb|AC068189.11| Homo sapiens chromosome 8, clone RP11-320N21, complete sequence
          Length = 147543

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tacaacagtcagggacaaaa 59
              ||||||||||||||||||||
Sbjct: 135827 tacaacagtcagggacaaaa 135846
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>gb|AC107082.3| Homo sapiens BAC clone RP11-807A15 from 2, complete sequence
          Length = 112944

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aacttttattgaagaaatac 20
             ||||||||||||||||||||
Sbjct: 10821 aacttttattgaagaaatac 10802
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>gb|AC087752.12| Homo sapiens chromosome 8, clone RP11-347C18, complete sequence
          Length = 164928

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tacaacagtcagggacaaaa 59
             ||||||||||||||||||||
Sbjct: 39302 tacaacagtcagggacaaaa 39321
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>dbj|AK045135.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130039E23
            product:unclassifiable, full insert sequence
          Length = 3005

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  tgataaaagtactgagtgta 123
            ||||||||||||||||||||
Sbjct: 2458 tgataaaagtactgagtgta 2439
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>gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191380

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    taaaagcctctgaaggagaa 485
              ||||||||||||||||||||
Sbjct: 131943 taaaagcctctgaaggagaa 131962
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>gb|AC023668.5| Homo sapiens BAC clone RP11-255I17 from 2, complete sequence
          Length = 156410

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 333   tttgggtcttcatctctggaggcg 356
             ||||||||||| ||||||||||||
Sbjct: 53459 tttgggtcttcctctctggaggcg 53436
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 560     gttccttctgagtgattcca 579
               ||||||||||||||||||||
Sbjct: 1170104 gttccttctgagtgattcca 1170085
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>gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, complete sequence
          Length = 186954

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    taaaagcctctgaaggagaa 485
              ||||||||||||||||||||
Sbjct: 134964 taaaagcctctgaaggagaa 134945
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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    ccttgaatttttggttttgg 337
              ||||||||||||||||||||
Sbjct: 665139 ccttgaatttttggttttgg 665158
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>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 220294

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 530   ccagcatcaaatgtgtaggcaacc 553
             ||||||||||| ||||||||||||
Sbjct: 66666 ccagcatcaaacgtgtaggcaacc 66689
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>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence
          Length = 187001

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tgataaaagtactgagtgta 123
             ||||||||||||||||||||
Sbjct: 71722 tgataaaagtactgagtgta 71741
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>dbj|AP003552.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2030F10, complete
              sequence
          Length = 165129

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     tacaacagtcagggacaaaa 59
              ||||||||||||||||||||
Sbjct: 107421 tacaacagtcagggacaaaa 107402


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,730,177
Number of Sequences: 3902068
Number of extensions: 5730177
Number of successful extensions: 102399
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102215
Number of HSP's gapped (non-prelim): 180
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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