ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29k08 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 310 bits (795), Expect = 2e-84 Identities = 152/167 (91%), Positives = 160/167 (95%) Frame = -2 Query: 678 LPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYS 499 LPAFPMGKIDQTRMWKVGE+VRSTRP GDLGPL+PFTAGV+VA+MMAQIEVLRKKGHSYS Sbjct: 412 LPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYS 471 Query: 498 EIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKD 319 EIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD Sbjct: 472 EIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSG 531 Query: 318 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQ 178 APINQDLISNF+SDPVHGAI+VCAELRPT+DISV A ADFVRPELRQ Sbjct: 532 APINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 309 bits (791), Expect = 6e-84 Identities = 151/168 (89%), Positives = 160/168 (95%) Frame = -2 Query: 678 LPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYS 499 LPAFPMGKIDQTRMWKVGEKVRS RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYS Sbjct: 428 LPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYS 487 Query: 498 EIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKD 319 EIINESVIE+VDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYIL+QQA V VD Sbjct: 488 EIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNG 547 Query: 318 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQS 175 APINQDLISNF+SDPVH AI VCA+LRP+VDISVTADADFVRPELRQ+ Sbjct: 548 APINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 595
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 308 bits (790), Expect = 8e-84 Identities = 151/169 (89%), Positives = 159/169 (94%) Frame = -2 Query: 678 LPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYS 499 LPAFPMG IDQTRMWKVGE+VR +RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYS Sbjct: 422 LPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYS 481 Query: 498 EIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKD 319 EIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD Sbjct: 482 EIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSG 541 Query: 318 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQSA 172 A IN+DLISNF SDPVHGAIEVCA+LRPTVDISV ADADFVRPELRQS+ Sbjct: 542 AAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 3e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = -2 Query: 549 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 370 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 369 RF 364 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = -2 Query: 549 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 370 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 369 RF 364 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = -2 Query: 549 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 370 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 369 RF 364 F Sbjct: 330 IF 331
>NFRB_ECOLI (P0AFA5) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +1 Query: 472 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 642 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 643 SLVDFA 660 + +A Sbjct: 565 VALHYA 570
>NFRB_ECO57 (P0AFA6) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +1 Query: 472 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 642 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 643 SLVDFA 660 + +A Sbjct: 565 VALHYA 570
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 4.0 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 214 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 366 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 366 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 259 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ILVC_DEHE1 (Q3Z891) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 30.0 bits (66), Expect = 6.7 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Frame = -2 Query: 564 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 385 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 384 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 256 PR ++ ++ + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEETYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 255 VCAELR 238 V AELR Sbjct: 317 VGAELR 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,772,164 Number of Sequences: 219361 Number of extensions: 1944704 Number of successful extensions: 6137 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5872 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6136 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
