ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1k03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469660.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
3gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 174 2e-40
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5dbj|AK062272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
7dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
8dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
9gb|AF139813.1|AF139813 Homo sapiens clone pDJ759j12 chromosome 1... 52 0.002
10gb|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone... 52 0.002
11dbj|AP006260.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 52 0.002
12gb|AC003025.1|AC003025 Human Chromosome 11p12.2 PAC clone pDJ466... 52 0.002
13ref|NM_188222.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
14dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 48 0.036
15dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 48 0.036
16emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chro... 46 0.14
17ref|XM_470001.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.57
18gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 44 0.57
19gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome... 44 0.57
20dbj|AK090201.1| Mus musculus 16 days neonate male medulla oblong... 44 0.57
21dbj|AK062698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.57
22gb|AF072694.1|AF072694 Oryza sativa germin-like protein 7 (GER7)... 44 0.57
23gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 2.2
24gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.2
25emb|AL138714.9| Human DNA sequence from clone RP11-121J7 on chro... 42 2.2
26gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, co... 42 2.2
27gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complet... 42 2.2
28gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence 42 2.2
29gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, comple... 40 8.9
30ref|XM_520023.1| PREDICTED: Pan troglodytes RecQ protein-like 4 ... 40 8.9
31gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, comp... 40 8.9
32gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosom... 40 8.9
33gb|DQ176868.1| Homo sapiens RecQ protein-like 4 (RECQL4) gene, c... 40 8.9
34gb|BC013277.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clon... 40 8.9
35gb|AC132085.3| Mus musculus BAC clone RP24-550M24 from chromosom... 40 8.9
36gb|BC011602.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clon... 40 8.9
37gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 40 8.9
38gb|AC153143.4| Mus musculus BAC clone RP23-241N10 from chromosom... 40 8.9
39gb|BC020496.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clon... 40 8.9
40gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, comp... 40 8.9
41emb|CR847517.1| Human DNA sequence from clone XX-NCIH2171_9D08, ... 40 8.9
42gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 8.9
43gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park C... 40 8.9
44ref|NM_067049.1| Caenorhabditis elegans Y47D3A.21 (Y47D3A.21) mR... 40 8.9
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
46gb|AC003037.1|AC003037 Homo sapiens Xp22 BAC GSHB 526D21 (Genome... 40 8.9
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.9
48ref|NM_004260.1| Homo sapiens RecQ protein-like 4 (RECQL4), mRNA 40 8.9
49gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, com... 40 8.9
50dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
51dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
52emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 ... 40 8.9
53gb|AC150898.2| Mus musculus BAC clone RP23-196E12 from 19, compl... 40 8.9
54emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, compl... 40 8.9
55gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 8.9
56dbj|AP003438.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.9
57gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome... 40 8.9
58emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in ... 40 8.9
59gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple... 40 8.9
60dbj|AB006532.1| Homo sapiens RecQ4 mRNA for DNA helicase, comple... 40 8.9
61dbj|AB026546.1| Homo sapiens gene for RECQL4 helicase, complete cds 40 8.9 
>ref|XM_469660.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1076

 Score =  174 bits (88), Expect = 2e-40
 Identities = 160/184 (86%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcttggacagcatgaagacgccggctgaggaggcgagcaccgccccggcgaagcaggcc 285
            ||||| ||||| | |||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 1018 agcttcgacaggaggaagacgccggcggaggaggcgagcacggcgccggcgaagcaagcc 959

                                                                        
Query: 286  atgtcgaggccggtgacgagcggcacgctcttgaacttctccaggacgcctgcctggagc 345
            ||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 958  atgtcaatcccggtgaccagcggcacgctcttgaacttctcgaggacgcccgcctggagc 899

                                                                        
Query: 346  agcaggatcacggcgtggccgaacctcgacttggcctgcgtcaccgaccggatcctcgcc 405
            |||||||  | |||||| |||| ||||| ||| |||||||| | |||| ||||||| |||
Sbjct: 898  agcaggagtatggcgtgcccgatcctcgtcttcgcctgcgtgatcgactggatcctggcc 839

                
Query: 406  cctt 409
            ||||
Sbjct: 838  cctt 835



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
           |||||||||||||||  |||||| |||||| | ||||| || || || ||||||||||||
Sbjct: 760 gagccgtagaacatgatgtacattcccatgccaaacgtgagaagagctgtgccgatcagg 701

                                                          
Query: 508 aacatgtctaatgcttcgatgagcagtttgatgatctcggctggatc 554
           |||||||||| ||| ||||| ||||| || |||||||| ||| ||||
Sbjct: 700 aacatgtctattgcctcgatcagcagctttatgatctctgcttgatc 654



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 607 ccacaaccctcgagaaaacatgggactgaaccgaggagcgatcc 650
           ||||| ||||||||||| ||||| ||||| |||| ||| |||||
Sbjct: 601 ccacatccctcgagaaagcatggcactgatccgacgagtgatcc 558
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 160/184 (86%)
 Strand = Plus / Minus

                                                                            
Query: 226      agcttggacagcatgaagacgccggctgaggaggcgagcaccgccccggcgaagcaggcc 285
                ||||| ||||| | |||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 30058375 agcttcgacaggaggaagacgccggcggaggaggcgagcacggcgccggcgaagcaagcc 30058316

                                                                            
Query: 286      atgtcgaggccggtgacgagcggcacgctcttgaacttctccaggacgcctgcctggagc 345
                ||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 30058315 atgtcaatcccggtgaccagcggcacgctcttgaacttctcgaggacgcccgcctggagc 30058256

                                                                            
Query: 346      agcaggatcacggcgtggccgaacctcgacttggcctgcgtcaccgaccggatcctcgcc 405
                |||||||  | |||||| |||| ||||| ||| |||||||| | |||| ||||||| |||
Sbjct: 30058255 agcaggagtatggcgtgcccgatcctcgtcttcgcctgcgtgatcgactggatcctggcc 30058196

                    
Query: 406      cctt 409
                ||||
Sbjct: 30058195 cctt 30058192



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 448      gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
                |||||||||||||||  |||||| |||||| | ||||| || || || ||||||||||||
Sbjct: 30058015 gagccgtagaacatgatgtacattcccatgccaaacgtgagaagagctgtgccgatcagg 30057956

                         
Query: 508      aacatgtct 516
                |||||||||
Sbjct: 30057955 aacatgtct 30057947



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 527      tgagcagtttgatgatctcggc 548
                ||||||||||||||||||||||
Sbjct: 33283231 tgagcagtttgatgatctcggc 33283210
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  174 bits (88), Expect = 2e-40
 Identities = 160/184 (86%)
 Strand = Plus / Plus

                                                                         
Query: 226   agcttggacagcatgaagacgccggctgaggaggcgagcaccgccccggcgaagcaggcc 285
             ||||| ||||| | |||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 49376 agcttcgacaggaggaagacgccggcggaggaggcgagcacggcgccggcgaagcaagcc 49435

                                                                         
Query: 286   atgtcgaggccggtgacgagcggcacgctcttgaacttctccaggacgcctgcctggagc 345
             ||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 49436 atgtcaatcccggtgaccagcggcacgctcttgaacttctcgaggacgcccgcctggagc 49495

                                                                         
Query: 346   agcaggatcacggcgtggccgaacctcgacttggcctgcgtcaccgaccggatcctcgcc 405
             |||||||  | |||||| |||| ||||| ||| |||||||| | |||| ||||||| |||
Sbjct: 49496 agcaggagtatggcgtgcccgatcctcgtcttcgcctgcgtgatcgactggatcctggcc 49555

                 
Query: 406   cctt 409
             ||||
Sbjct: 49556 cctt 49559



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 448   gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
             |||||||||||||||  |||||| |||||| | ||||| || || || ||||||||||||
Sbjct: 49736 gagccgtagaacatgatgtacattcccatgccaaacgtgagaagagctgtgccgatcagg 49795

                      
Query: 508   aacatgtct 516
             |||||||||
Sbjct: 49796 aacatgtct 49804
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 160/184 (86%)
 Strand = Plus / Minus

                                                                            
Query: 226      agcttggacagcatgaagacgccggctgaggaggcgagcaccgccccggcgaagcaggcc 285
                ||||| ||||| | |||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 30149797 agcttcgacaggaggaagacgccggcggaggaggcgagcacggcgccggcgaagcaagcc 30149738

                                                                            
Query: 286      atgtcgaggccggtgacgagcggcacgctcttgaacttctccaggacgcctgcctggagc 345
                ||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 30149737 atgtcaatcccggtgaccagcggcacgctcttgaacttctcgaggacgcccgcctggagc 30149678

                                                                            
Query: 346      agcaggatcacggcgtggccgaacctcgacttggcctgcgtcaccgaccggatcctcgcc 405
                |||||||  | |||||| |||| ||||| ||| |||||||| | |||| ||||||| |||
Sbjct: 30149677 agcaggagtatggcgtgcccgatcctcgtcttcgcctgcgtgatcgactggatcctggcc 30149618

                    
Query: 406      cctt 409
                ||||
Sbjct: 30149617 cctt 30149614



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 448      gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
                |||||||||||||||  |||||| |||||| | ||||| || || || ||||||||||||
Sbjct: 30149437 gagccgtagaacatgatgtacattcccatgccaaacgtgagaagagctgtgccgatcagg 30149378

                         
Query: 508      aacatgtct 516
                |||||||||
Sbjct: 30149377 aacatgtct 30149369



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 527      tgagcagtttgatgatctcggc 548
                ||||||||||||||||||||||
Sbjct: 33373741 tgagcagtttgatgatctcggc 33373720
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>dbj|AK062272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A10, full
            insert sequence
          Length = 1297

 Score =  174 bits (88), Expect = 2e-40
 Identities = 160/184 (86%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcttggacagcatgaagacgccggctgaggaggcgagcaccgccccggcgaagcaggcc 285
            ||||| ||||| | |||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 1034 agcttcgacaggaggaagacgccggcggaggaggcgagcacggcgccggcgaagcaagcc 975

                                                                        
Query: 286  atgtcgaggccggtgacgagcggcacgctcttgaacttctccaggacgcctgcctggagc 345
            ||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 974  atgtcaatcccggtgaccagcggcacgctcttgaacttctcgaggacgcccgcctggagc 915

                                                                        
Query: 346  agcaggatcacggcgtggccgaacctcgacttggcctgcgtcaccgaccggatcctcgcc 405
            |||||||  | |||||| |||| ||||| ||| |||||||| | |||| ||||||| |||
Sbjct: 914  agcaggagtatggcgtgcccgatcctcgtcttcgcctgcgtgatcgactggatcctggcc 855

                
Query: 406  cctt 409
            ||||
Sbjct: 854  cctt 851



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 448 gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
           |||||||||||||||  |||||| |||||| | ||||| || || || ||||||||||||
Sbjct: 776 gagccgtagaacatgatgtacattcccatgccaaacgtgagaagagctgtgccgatcagg 717

                                                          
Query: 508 aacatgtctaatgcttcgatgagcagtttgatgatctcggctggatc 554
           |||||||||| ||| ||||| ||||| || |||||||| ||| ||||
Sbjct: 716 aacatgtctattgcctcgatcagcagctttatgatctctgcttgatc 670



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 607 ccacaaccctcgagaaaacatgggactgaaccgaggagcgatcc 650
           ||||| ||||||||||| ||||| ||||| |||| ||| |||||
Sbjct: 617 ccacatccctcgagaaagcatggcactgatccgacgagtgatcc 574
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 614     cctcgagaaaacatgggactgaaccgaggagcgatcc 650
               |||||||||||||||||||||| |||||||| |||||
Sbjct: 5074092 cctcgagaaaacatgggactgatccgaggagtgatcc 5074128



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                           
Query: 448     gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
               |||||||||||||||  | |||| |||||| | ||||| || || || |||| |||||||
Sbjct: 5073757 gagccgtagaacatgatgcacattcccatgccaaacgtgagaagagcggtgcagatcagg 5073816

                        
Query: 508     aacatgtct 516
               |||||||||
Sbjct: 5073817 aacatgtct 5073825
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>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0001B06
          Length = 140304

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 614   cctcgagaaaacatgggactgaaccgaggagcgatcc 650
             |||||||||||||||||||||| |||||||| |||||
Sbjct: 67530 cctcgagaaaacatgggactgatccgaggagtgatcc 67566



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                         
Query: 448   gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
             |||||||||||||||  | |||| |||||| | ||||| || || || |||| |||||||
Sbjct: 67195 gagccgtagaacatgatgcacattcccatgccaaacgtgagaagagcggtgcagatcagg 67254

                      
Query: 508   aacatgtct 516
             |||||||||
Sbjct: 67255 aacatgtct 67263
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>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0498B01
          Length = 146812

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 614  cctcgagaaaacatgggactgaaccgaggagcgatcc 650
            |||||||||||||||||||||| |||||||| |||||
Sbjct: 6123 cctcgagaaaacatgggactgatccgaggagtgatcc 6159



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                        
Query: 448  gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
            |||||||||||||||  | |||| |||||| | ||||| || || || |||| |||||||
Sbjct: 5788 gagccgtagaacatgatgcacattcccatgccaaacgtgagaagagcggtgcagatcagg 5847

                     
Query: 508  aacatgtct 516
            |||||||||
Sbjct: 5848 aacatgtct 5856
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>gb|AF139813.1|AF139813 Homo sapiens clone pDJ759j12 chromosome 11 map 11q13, complete sequence
          Length = 142092

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 58    agacaaaagaggaaaaggcacaagat 83
             ||||||||||||||||||||||||||
Sbjct: 54454 agacaaaagaggaaaaggcacaagat 54429
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>gb|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone pDJ519o13 containing human gene
              for ferritin heavy chain (FTH), complete sequence
          Length = 196080

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 58     agacaaaagaggaaaaggcacaagat 83
              ||||||||||||||||||||||||||
Sbjct: 162342 agacaaaagaggaaaaggcacaagat 162367
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>dbj|AP006260.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-61G16, complete
             sequence
          Length = 163024

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 58    agacaaaagaggaaaaggcacaagat 83
             ||||||||||||||||||||||||||
Sbjct: 95512 agacaaaagaggaaaaggcacaagat 95537
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>gb|AC003025.1|AC003025 Human Chromosome 11p12.2 PAC clone pDJ466a11, complete sequence
          Length = 112309

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 58    agacaaaagaggaaaaggcacaagat 83
             ||||||||||||||||||||||||||
Sbjct: 62481 agacaaaagaggaaaaggcacaagat 62506
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>ref|NM_188222.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 717

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 448 gagccgtagaacatgccgtacatccccatggcgaacgtcagcagggcagtgccgatcagg 507
           |||||||||||||||  | |||| |||||| | ||||| || || || |||| |||||||
Sbjct: 446 gagccgtagaacatgatgcacattcccatgccaaacgtgagaagagcggtgcagatcagg 387

                    
Query: 508 aacatgtct 516
           |||||||||
Sbjct: 386 aacatgtct 378
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>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
              sequence
          Length = 186978

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 57     gagacaaaagaggaaaaggcacaa 80
              ||||||||||||||||||||||||
Sbjct: 130979 gagacaaaagaggaaaaggcacaa 130956
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>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete
            sequences
          Length = 150638

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 57   gagacaaaagaggaaaaggcacaa 80
            ||||||||||||||||||||||||
Sbjct: 4140 gagacaaaagaggaaaaggcacaa 4117
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>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 137783

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 149   aaagaacaaatgaataatgcatg 171
             |||||||||||||||||||||||
Sbjct: 83074 aaagaacaaatgaataatgcatg 83096
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>ref|XM_470001.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 856

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 527 tgagcagtttgatgatctcggc 548
           ||||||||||||||||||||||
Sbjct: 691 tgagcagtttgatgatctcggc 670
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 527   tgagcagtttgatgatctcggc 548
             ||||||||||||||||||||||
Sbjct: 39747 tgagcagtttgatgatctcggc 39726
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>gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome 12, complete sequence
          Length = 215692

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 418   ctctcgtagatgggctcctgga 439
             ||||||||||||||||||||||
Sbjct: 85256 ctctcgtagatgggctcctgga 85235
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>dbj|AK090201.1| Mus musculus 16 days neonate male medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:G630016I04
           product:unclassifiable, full insert sequence
          Length = 1280

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 418 ctctcgtagatgggctcctgga 439
           ||||||||||||||||||||||
Sbjct: 72  ctctcgtagatgggctcctgga 93
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>dbj|AK062698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A11, full
           insert sequence
          Length = 856

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 527 tgagcagtttgatgatctcggc 548
           ||||||||||||||||||||||
Sbjct: 691 tgagcagtttgatgatctcggc 670
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>gb|AF072694.1|AF072694 Oryza sativa germin-like protein 7 (GER7) mRNA, complete cds
          Length = 856

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 527 tgagcagtttgatgatctcggc 548
           ||||||||||||||||||||||
Sbjct: 676 tgagcagtttgatgatctcggc 655
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 286     atgtcgaggccggtgacgagc 306
               |||||||||||||||||||||
Sbjct: 3719000 atgtcgaggccggtgacgagc 3718980
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 283     gccatgtcgaggccggtgacg 303
               |||||||||||||||||||||
Sbjct: 3352980 gccatgtcgaggccggtgacg 3353000
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>emb|AL138714.9| Human DNA sequence from clone RP11-121J7 on chromosome 13q32.1-32.3
             Contains the 3' end of a novel gene, the 5' end of the
             GPC5 gene for glypican 5, 5 miR-precursor-13 micro RNAs
             and a CpG island, complete sequence
          Length = 106376

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 67    aggaaaaggcacaagatcttcacag 91
             ||||| |||||||||||||||||||
Sbjct: 95634 aggaataggcacaagatcttcacag 95610
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>gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, complete sequence
          Length = 177539

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tctccaggacgcctgcctgga 343
              |||||||||||||||||||||
Sbjct: 114517 tctccaggacgcctgcctgga 114497
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>gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complete sequence
          Length = 98569

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   aaatgaataatgcatgttatg 176
             |||||||||||||||||||||
Sbjct: 40881 aaatgaataatgcatgttatg 40861
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>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence
          Length = 122469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 597   aacaacaatgccacaaccctc 617
             |||||||||||||||||||||
Sbjct: 25326 aacaacaatgccacaaccctc 25306
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>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence
          Length = 181442

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    gaaggaggcttgcttgcatg 208
              ||||||||||||||||||||
Sbjct: 152050 gaaggaggcttgcttgcatg 152031
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>ref|XM_520023.1| PREDICTED: Pan troglodytes RecQ protein-like 4 (LOC464469), mRNA
          Length = 4053

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 3686 cctgcctggagcagcaggat 3705
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>gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, complete sequence
          Length = 168421

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gaaagaacaaatgaataatg 167
             ||||||||||||||||||||
Sbjct: 29360 gaaagaacaaatgaataatg 29341
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>gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosome 18, complete sequence
          Length = 186205

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    atctactgtgtgggacatgg 571
              ||||||||||||||||||||
Sbjct: 120963 atctactgtgtgggacatgg 120982
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>gb|DQ176868.1| Homo sapiens RecQ protein-like 4 (RECQL4) gene, complete cds
          Length = 10293

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 7711 cctgcctggagcagcaggat 7730
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>gb|BC013277.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clone MGC:16164
            IMAGE:3634266), complete cds
          Length = 2137

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 1599 cctgcctggagcagcaggat 1618
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>gb|AC132085.3| Mus musculus BAC clone RP24-550M24 from chromosome 13, complete
            sequence
          Length = 150362

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  acaaatgaataatgcatgtt 173
            ||||||||||||||||||||
Sbjct: 7616 acaaatgaataatgcatgtt 7635
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>gb|BC011602.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clone IMAGE:3139122),
            partial cds
          Length = 2389

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 1861 cctgcctggagcagcaggat 1880
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    atctactgtgtgggacatgg 571
              ||||||||||||||||||||
Sbjct: 213166 atctactgtgtgggacatgg 213185
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>gb|AC153143.4| Mus musculus BAC clone RP23-241N10 from chromosome 13, complete sequence
          Length = 207860

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    acaaatgaataatgcatgtt 173
              ||||||||||||||||||||
Sbjct: 119527 acaaatgaataatgcatgtt 119546
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>gb|BC020496.2| Homo sapiens RecQ protein-like 4, mRNA (cDNA clone IMAGE:3902674),
            containing frame-shift errors
          Length = 3909

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 3385 cctgcctggagcagcaggat 3404
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>gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, complete sequence
          Length = 187100

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gaaagaacaaatgaataatg 167
             ||||||||||||||||||||
Sbjct: 50815 gaaagaacaaatgaataatg 50796
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>emb|CR847517.1| Human DNA sequence from clone XX-NCIH2171_9D08, complete sequence
          Length = 112973

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    aaaagaggaaaaggcacaag 81
             ||||||||||||||||||||
Sbjct: 76940 aaaagaggaaaaggcacaag 76921
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    ccgagagcttggacagcatgaaga 244
              ||||||||||||||||| ||||||
Sbjct: 182169 ccgagagcttggacagcttgaaga 182192
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>gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185454

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     agacaaaagaggaaaaggca 77
              ||||||||||||||||||||
Sbjct: 158082 agacaaaagaggaaaaggca 158063
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>ref|NM_067049.1| Caenorhabditis elegans Y47D3A.21 (Y47D3A.21) mRNA, complete cds
          Length = 579

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 524 cgatgagcagtttgatgatctcgg 547
           |||||||||| |||||||||||||
Sbjct: 540 cgatgagcagattgatgatctcgg 563
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 290     cgaggccggtgacgagcggc 309
               ||||||||||||||||||||
Sbjct: 8648753 cgaggccggtgacgagcggc 8648734
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>gb|AC003037.1|AC003037 Homo sapiens Xp22 BAC GSHB 526D21 (Genome Systems Human BAC library)
              complete sequence
          Length = 213863

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 399    cctcgcccctttcttcagcctctc 422
              |||| |||||||||||||||||||
Sbjct: 144781 cctcacccctttcttcagcctctc 144804
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     ggaggcgagcaccgccccgg 274
               ||||||||||||||||||||
Sbjct: 1363253 ggaggcgagcaccgccccgg 1363272
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>ref|NM_004260.1| Homo sapiens RecQ protein-like 4 (RECQL4), mRNA
          Length = 3627

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 3260 cctgcctggagcagcaggat 3279
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>gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, complete sequence
          Length = 197294

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    cctgcctggagcagcaggat 353
              ||||||||||||||||||||
Sbjct: 116708 cctgcctggagcagcaggat 116727
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0037N01
          Length = 174085

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cgaggccggtgacgagcggc 309
             ||||||||||||||||||||
Sbjct: 63735 cgaggccggtgacgagcggc 63716
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>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0031A09
          Length = 162511

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    cgaggccggtgacgagcggc 309
              ||||||||||||||||||||
Sbjct: 123572 cgaggccggtgacgagcggc 123553
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>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6,
              complete sequence
          Length = 186793

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     caagctagtacagtacaaat 38
              ||||||||||||||||||||
Sbjct: 108374 caagctagtacagtacaaat 108393
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>gb|AC150898.2| Mus musculus BAC clone RP23-196E12 from 19, complete sequence
          Length = 231474

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 67   aggaaaaggcacaagatcttcacaggtt 94
            |||||||||||||  |||||||||||||
Sbjct: 6355 aggaaaaggcacagcatcttcacaggtt 6382
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>emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, complete sequence
          Length = 199814

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 524    cgatgagcagtttgatgatctcgg 547
              |||||||||| |||||||||||||
Sbjct: 140672 cgatgagcagattgatgatctcgg 140649
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     tcttgctttgctaagtgcta 143
               ||||||||||||||||||||
Sbjct: 2481480 tcttgctttgctaagtgcta 2481499
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>dbj|AP003438.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1458E12
          Length = 145886

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aacaaatgaataatgcatgt 172
              ||||||||||||||||||||
Sbjct: 123011 aacaaatgaataatgcatgt 122992
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>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence
          Length = 229414

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gaaggaggcttgcttgcatg 208
             ||||||||||||||||||||
Sbjct: 81233 gaaggaggcttgcttgcatg 81214
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>emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in linkage group 6,
             complete sequence
          Length = 222787

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    caagctagtacagtacaaat 38
             ||||||||||||||||||||
Sbjct: 23190 caagctagtacagtacaaat 23171
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>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence
          Length = 230420

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 67     aggaaaaggcacaagatcttcacaggtt 94
              |||||||||||||  |||||||||||||
Sbjct: 178779 aggaaaaggcacagcatcttcacaggtt 178806
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>dbj|AB006532.1| Homo sapiens RecQ4 mRNA for DNA helicase, complete cds
          Length = 3627

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 3260 cctgcctggagcagcaggat 3279
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>dbj|AB026546.1| Homo sapiens gene for RECQL4 helicase, complete cds
          Length = 6462

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 334  cctgcctggagcagcaggat 353
            ||||||||||||||||||||
Sbjct: 5710 cctgcctggagcagcaggat 5729


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,761,458
Number of Sequences: 3902068
Number of extensions: 4761458
Number of successful extensions: 93428
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92945
Number of HSP's gapped (non-prelim): 483
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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