ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 434 e-118
2dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 434 e-118
3dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 434 e-118
4ref|XM_482675.1| Oryza sativa (japonica cultivar-group), mRNA 68 4e-08
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
6dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
7dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
8emb|AJ718356.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT43-280A... 54 6e-04
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 46 0.15
10emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genom... 46 0.15
11gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.15
12gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 44 0.59
13gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.59
14dbj|AP006404.1| Lotus japonicus genomic DNA, chromosome 5, clone... 44 0.59
15ref|NM_112835.3| Arabidopsis thaliana amino acid binding / oxido... 42 2.3
16gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 2.3
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 2.3
18gb|AC102399.11| Mus musculus chromosome 3, clone RP24-217J3, com... 42 2.3
19emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chro... 42 2.3
20emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.3
21gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, comp... 42 2.3
22gb|AY042858.1| Arabidopsis thaliana phosphoglycerate dehydrogena... 42 2.3
23emb|BX824744.1|CNS0A7CR Arabidopsis thaliana Full-length cDNA Co... 42 2.3
24dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 2.3
25dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.3
26emb|AL731783.10| Mouse DNA sequence from clone RP23-124E18 on ch... 42 2.3
27gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, ... 40 9.2
28gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complet... 40 9.2
29gb|BC098704.1| Rattus norvegicus similar to TR4 orphan receptor ... 40 9.2
30emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chr... 40 9.2
31gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, co... 40 9.2
32emb|AL935258.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 9.2
33gb|AC113337.2| Genomic sequence for Oryza sativa (japonica culti... 40 9.2
34emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in... 40 9.2
35gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
36gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence 40 9.2
37gb|AF314786.1|AF314786 Alectryon semicinereus chloroplast matura... 40 9.2
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
39gb|AC073964.3|AC073964 Homo sapiens chromosome 15 clone RP11-394... 40 9.2
40gb|AC022407.6|AC022407 Homo sapiens chromosome 15 clone RP11-105... 40 9.2
41ref|XM_341415.2| PREDICTED: Rattus norvegicus similar to TR4 orp... 40 9.2
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.2
43emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on ch... 40 9.2
44emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, c... 40 9.2
45gb|AC131028.13| Mus musculus chromosome 3, clone RP23-293M23, co... 40 9.2
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  434 bits (219), Expect = e-118
 Identities = 471/555 (84%)
 Strand = Plus / Plus

                                                                            
Query: 121      tctaaagcttaagaaagacaaactcctgcaccgatggcgtttccccgatcaacttgagtg 180
                |||||||||||| ||||||||||||||  || |||||  | || |||||||||||||| |
Sbjct: 26471437 tctaaagcttaataaagacaaactcctcaactgatggtatgtcgccgatcaacttgagag 26471496

                                                                            
Query: 181      cttccttctcaggctcctcatcaatcccaatggccatgatggcctgcttccctggagcaa 240
                |||||||||||||||||||||||| |||||||||||| || |||||||| || |||||| 
Sbjct: 26471497 cttccttctcaggctcctcatcaaccccaatggccattatcgcctgctttccaggagcag 26471556

                                                                            
Query: 241      tccttccaacgctcataaagttgacattcaggttcatcgtcccgagaatcgatcccacct 300
                |||||||||||||||| || || |||||||  |||||| |||| | ||| ||||| ||||
Sbjct: 26471557 tccttccaacgctcatgaaattcacattcacattcatcttccccaaaattgatcctacct 26471616

                                                                            
Query: 301      tgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaaggctaa 360
                | || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 26471617 ttccaatgatacctggctgatcaacttgacggcagagtattaggttgccctcaagactaa 26471676

                                                                            
Query: 361      catcgacactgaaaggcccgacaagtgtgagatgcggcgtgccatccttaaccttcccct 420
                |||| |||||||| ||||| |||||||||||||| ||  | |||||||| ||||  ||||
Sbjct: 26471677 catccacactgaatggcccaacaagtgtgagatgtggtttcccatccttcacctctccct 26471736

                                                                            
Query: 421      ccactctgatatcaccgtcgtcagataacgcaccggcgaacttggactccacattggcaa 480
                |||||||||| ||||| |||||||| |  |||||||||||||||||||| |||||||| |
Sbjct: 26471737 ccactctgatgtcaccttcgtcagagagggcaccggcgaacttggactctacattggcga 26471796

                                                                            
Query: 481      gctggacctggatagagtttatagggacctcaggggagccgtcgaggagaatccgctcct 540
                | || ||||||||||| | |||||| | ||| || || || || ||||| || | ||| |
Sbjct: 26471797 gatgcacctggatagaatctataggaatctccggtgatccatcaaggaggattctctctt 26471856

                                                                            
Query: 541      cgattatccggagccctctttgcttggcaacatagtcagcattcaccatgttaacaaatg 600
                || | || || || |||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 26471857 cgctgatgcgaaggcctctttgcttggccacatagtcagcattgacaatgttaacaaatg 26471916

                                                                            
Query: 601      cacttgaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtcca 660
                ||||||||||||| |||| ||||||||| |||||||| |||||||| |  ||||||||||
Sbjct: 26471917 cacttgaaatgggctcgatgatgcctttggtgaccatagcacggagtacccttgtgtcca 26471976

                               
Query: 661      agtcatccgggtctc 675
                  ||||| |||||||
Sbjct: 26471977 gatcatcagggtctc 26471991
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0709F06
          Length = 170964

 Score =  434 bits (219), Expect = e-118
 Identities = 471/555 (84%)
 Strand = Plus / Plus

                                                                         
Query: 121   tctaaagcttaagaaagacaaactcctgcaccgatggcgtttccccgatcaacttgagtg 180
             |||||||||||| ||||||||||||||  || |||||  | || |||||||||||||| |
Sbjct: 83476 tctaaagcttaataaagacaaactcctcaactgatggtatgtcgccgatcaacttgagag 83535

                                                                         
Query: 181   cttccttctcaggctcctcatcaatcccaatggccatgatggcctgcttccctggagcaa 240
             |||||||||||||||||||||||| |||||||||||| || |||||||| || |||||| 
Sbjct: 83536 cttccttctcaggctcctcatcaaccccaatggccattatcgcctgctttccaggagcag 83595

                                                                         
Query: 241   tccttccaacgctcataaagttgacattcaggttcatcgtcccgagaatcgatcccacct 300
             |||||||||||||||| || || |||||||  |||||| |||| | ||| ||||| ||||
Sbjct: 83596 tccttccaacgctcatgaaattcacattcacattcatcttccccaaaattgatcctacct 83655

                                                                         
Query: 301   tgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaaggctaa 360
             | || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 83656 ttccaatgatacctggctgatcaacttgacggcagagtattaggttgccctcaagactaa 83715

                                                                         
Query: 361   catcgacactgaaaggcccgacaagtgtgagatgcggcgtgccatccttaaccttcccct 420
             |||| |||||||| ||||| |||||||||||||| ||  | |||||||| ||||  ||||
Sbjct: 83716 catccacactgaatggcccaacaagtgtgagatgtggtttcccatccttcacctctccct 83775

                                                                         
Query: 421   ccactctgatatcaccgtcgtcagataacgcaccggcgaacttggactccacattggcaa 480
             |||||||||| ||||| |||||||| |  |||||||||||||||||||| |||||||| |
Sbjct: 83776 ccactctgatgtcaccttcgtcagagagggcaccggcgaacttggactctacattggcga 83835

                                                                         
Query: 481   gctggacctggatagagtttatagggacctcaggggagccgtcgaggagaatccgctcct 540
             | || ||||||||||| | |||||| | ||| || || || || ||||| || | ||| |
Sbjct: 83836 gatgcacctggatagaatctataggaatctccggtgatccatcaaggaggattctctctt 83895

                                                                         
Query: 541   cgattatccggagccctctttgcttggcaacatagtcagcattcaccatgttaacaaatg 600
             || | || || || |||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 83896 cgctgatgcgaaggcctctttgcttggccacatagtcagcattgacaatgttaacaaatg 83955

                                                                         
Query: 601   cacttgaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtcca 660
             ||||||||||||| |||| ||||||||| |||||||| |||||||| |  ||||||||||
Sbjct: 83956 cacttgaaatgggctcgatgatgcctttggtgaccatagcacggagtacccttgtgtcca 84015

                            
Query: 661   agtcatccgggtctc 675
               ||||| |||||||
Sbjct: 84016 gatcatcagggtctc 84030
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>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0460H04
          Length = 166490

 Score =  434 bits (219), Expect = e-118
 Identities = 471/555 (84%)
 Strand = Plus / Plus

                                                                        
Query: 121  tctaaagcttaagaaagacaaactcctgcaccgatggcgtttccccgatcaacttgagtg 180
            |||||||||||| ||||||||||||||  || |||||  | || |||||||||||||| |
Sbjct: 5090 tctaaagcttaataaagacaaactcctcaactgatggtatgtcgccgatcaacttgagag 5149

                                                                        
Query: 181  cttccttctcaggctcctcatcaatcccaatggccatgatggcctgcttccctggagcaa 240
            |||||||||||||||||||||||| |||||||||||| || |||||||| || |||||| 
Sbjct: 5150 cttccttctcaggctcctcatcaaccccaatggccattatcgcctgctttccaggagcag 5209

                                                                        
Query: 241  tccttccaacgctcataaagttgacattcaggttcatcgtcccgagaatcgatcccacct 300
            |||||||||||||||| || || |||||||  |||||| |||| | ||| ||||| ||||
Sbjct: 5210 tccttccaacgctcatgaaattcacattcacattcatcttccccaaaattgatcctacct 5269

                                                                        
Query: 301  tgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaaggctaa 360
            | || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 5270 ttccaatgatacctggctgatcaacttgacggcagagtattaggttgccctcaagactaa 5329

                                                                        
Query: 361  catcgacactgaaaggcccgacaagtgtgagatgcggcgtgccatccttaaccttcccct 420
            |||| |||||||| ||||| |||||||||||||| ||  | |||||||| ||||  ||||
Sbjct: 5330 catccacactgaatggcccaacaagtgtgagatgtggtttcccatccttcacctctccct 5389

                                                                        
Query: 421  ccactctgatatcaccgtcgtcagataacgcaccggcgaacttggactccacattggcaa 480
            |||||||||| ||||| |||||||| |  |||||||||||||||||||| |||||||| |
Sbjct: 5390 ccactctgatgtcaccttcgtcagagagggcaccggcgaacttggactctacattggcga 5449

                                                                        
Query: 481  gctggacctggatagagtttatagggacctcaggggagccgtcgaggagaatccgctcct 540
            | || ||||||||||| | |||||| | ||| || || || || ||||| || | ||| |
Sbjct: 5450 gatgcacctggatagaatctataggaatctccggtgatccatcaaggaggattctctctt 5509

                                                                        
Query: 541  cgattatccggagccctctttgcttggcaacatagtcagcattcaccatgttaacaaatg 600
            || | || || || |||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 5510 cgctgatgcgaaggcctctttgcttggccacatagtcagcattgacaatgttaacaaatg 5569

                                                                        
Query: 601  cacttgaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtcca 660
            ||||||||||||| |||| ||||||||| |||||||| |||||||| |  ||||||||||
Sbjct: 5570 cacttgaaatgggctcgatgatgcctttggtgaccatagcacggagtacccttgtgtcca 5629

                           
Query: 661  agtcatccgggtctc 675
              ||||| |||||||
Sbjct: 5630 gatcatcagggtctc 5644
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>ref|XM_482675.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1866

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 297  accttgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaagg 356
            ||||||||||| ||||| ||||||||||  |||||||| || |||||||||||||| |||
Sbjct: 1691 accttgccgatcatgccgggctggtcgatctgccggcacaggatcaggttgccctccagg 1632

              
Query: 357  ct 358
            ||
Sbjct: 1631 ct 1630



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  atggccatgatggcctgctt 229
            ||||||||||||||||||||
Sbjct: 1778 atggccatgatggcctgctt 1759
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 297      accttgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaagg 356
                ||||||||||| ||||| ||||||||||  |||||||| || |||||||||||||| |||
Sbjct: 21811331 accttgccgatcatgccgggctggtcgatctgccggcacaggatcaggttgccctccagg 21811390

                  
Query: 357      ct 358
                ||
Sbjct: 21811391 ct 21811392



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      atggccatgatggcctgctt 229
                ||||||||||||||||||||
Sbjct: 21811244 atggccatgatggcctgctt 21811263
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 297   accttgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaagg 356
             ||||||||||| ||||| ||||||||||  |||||||| || |||||||||||||| |||
Sbjct: 90914 accttgccgatcatgccgggctggtcgatctgccggcacaggatcaggttgccctccagg 90973

               
Query: 357   ct 358
             ||
Sbjct: 90974 ct 90975



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   atggccatgatggcctgctt 229
             ||||||||||||||||||||
Sbjct: 90827 atggccatgatggcctgctt 90846
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>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0409A07
          Length = 146663

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 297   accttgccgatgatgcccggctggtcgacttgccggcagagtatcaggttgccctcaagg 356
             ||||||||||| ||||| ||||||||||  |||||||| || |||||||||||||| |||
Sbjct: 12000 accttgccgatcatgccgggctggtcgatctgccggcacaggatcaggttgccctccagg 12059

               
Query: 357   ct 358
             ||
Sbjct: 12060 ct 12061



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   atggccatgatggcctgctt 229
             ||||||||||||||||||||
Sbjct: 11913 atggccatgatggcctgctt 11932
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>emb|AJ718356.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT43-280A, cultivar Bright
           Yellow 2
          Length = 212

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 233 tggagcaatccttccaacgctcataaagttgacattcaggttc 275
           |||||||||||||||||| ||||| ||| ||||||||| ||||
Sbjct: 112 tggagcaatccttccaacactcatgaagctgacattcacgttc 70
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 296     caccttgccgatgatgcccggct 318
               |||||||||||||||||||||||
Sbjct: 3998971 caccttgccgatgatgcccggct 3998993
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>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16
          Length = 349746

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 296   caccttgccgatgatgcccggct 318
             |||||||||||||||||||||||
Sbjct: 63995 caccttgccgatgatgcccggct 64017
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 296     caccttgccgatgatgcccggct 318
               |||||||||||||||||||||||
Sbjct: 1946419 caccttgccgatgatgcccggct 1946397



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 290     cgatcccaccttgccgatgatgcc 313
               |||||||||| |||||||||||||
Sbjct: 1842754 cgatcccaccctgccgatgatgcc 1842731
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 311     gcccggctggtcgacttgccgg 332
               ||||||||||||||||||||||
Sbjct: 1386687 gcccggctggtcgacttgccgg 1386708
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 296     caccttgccgatgatgcccggc 317
               ||||||||||||||||||||||
Sbjct: 1362909 caccttgccgatgatgcccggc 1362930
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>dbj|AP006404.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT43G19, TM0290,
             complete sequence
          Length = 125592

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 468   tccacattggcaagctggacctggat 493
             ||||||||||||| ||||||||||||
Sbjct: 64311 tccacattggcaatctggacctggat 64336
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>ref|NM_112835.3| Arabidopsis thaliana amino acid binding / oxidoreductase, acting on
            the CH-OH group of donors, NAD or NADP as acceptor /
            phosphoglycerate dehydrogen> AT3G19480 mRNA, complete cds
          Length = 1961

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 606  gaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtc 658
            ||||||||||||| ||| || ||  |||||||||| ||||||| ||| |||||
Sbjct: 1342 gaaatgggttcgatgatcccctttatgaccatggctcggagaagtctagtgtc 1290
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 296     caccttgccgatgatgcccgg 316
               |||||||||||||||||||||
Sbjct: 2550953 caccttgccgatgatgcccgg 2550933
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 296     caccttgccgatgatgcccgg 316
               |||||||||||||||||||||
Sbjct: 3763165 caccttgccgatgatgcccgg 3763145
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>gb|AC102399.11| Mus musculus chromosome 3, clone RP24-217J3, complete sequence
          Length = 168566

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  cccaatggccatgatggcctg 226
            |||||||||||||||||||||
Sbjct: 9413 cccaatggccatgatggcctg 9433
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>emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chromosome 13, complete
              sequence
          Length = 129332

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 94     tgttacaaacaaatcaacctacatt 118
              |||||||| ||||||||||||||||
Sbjct: 119530 tgttacaatcaaatcaacctacatt 119554
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 296     caccttgccgatgatgcccgg 316
               |||||||||||||||||||||
Sbjct: 3503534 caccttgccgatgatgcccgg 3503514
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>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence
          Length = 208510

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    cccaatggccatgatggcctg 226
              |||||||||||||||||||||
Sbjct: 104512 cccaatggccatgatggcctg 104492
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>gb|AY042858.1| Arabidopsis thaliana phosphoglycerate dehydrogenase (MLD14.22) mRNA,
            partial cds
          Length = 1678

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 606  gaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtc 658
            ||||||||||||| ||| || ||  |||||||||| ||||||| ||| |||||
Sbjct: 1068 gaaatgggttcgatgatcccctttatgaccatggctcggagaagtctagtgtc 1016
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>emb|BX824744.1|CNS0A7CR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH6ZB12 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2021

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 606  gaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtc 658
            ||||||||||||| ||| || ||  |||||||||| ||||||| ||| |||||
Sbjct: 1342 gaaatgggttcgatgatcccctttatgaccatggctcggagaagtctagtgtc 1290
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 285     agaatcgatcccaccttgccgatgatgcccggc 317
               |||| ||| ||||||||||||||||| ||||||
Sbjct: 2291124 agaaacgaacccaccttgccgatgatccccggc 2291092
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>dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLD14
          Length = 83097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 606   gaaatgggttcgacgatgcctttcgtgaccatggcacggagaattcttgtgtc 658
             ||||||||||||| ||| || ||  |||||||||| ||||||| ||| |||||
Sbjct: 67392 gaaatgggttcgatgatcccctttatgaccatggctcggagaagtctagtgtc 67340
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>emb|AL731783.10| Mouse DNA sequence from clone RP23-124E18 on chromosome 2, complete
             sequence
          Length = 207209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 181   cttccttctcaggctcctcatcaatccca 209
             ||||||||||||||||||| |||||||||
Sbjct: 80469 cttccttctcaggctcctc-tcaatccca 80496
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>gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, complete sequence
          Length = 196117

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    ttaacaaatgcacttgaaat 610
              ||||||||||||||||||||
Sbjct: 178856 ttaacaaatgcacttgaaat 178837
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>gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complete sequence
          Length = 190110

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aaatcaacctacatttctct 123
             ||||||||||||||||||||
Sbjct: 93580 aaatcaacctacatttctct 93599
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>gb|BC098704.1| Rattus norvegicus similar to TR4 orphan receptor associated protein
           TRA16, mRNA (cDNA clone MGC:112689 IMAGE:7389633),
           complete cds
          Length = 1544

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 610 tgggttcgacgatgcctttc 629
           ||||||||||||||||||||
Sbjct: 156 tgggttcgacgatgcctttc 137
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>emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chromosome 6 Contains a novel
              gene and a CpG island, complete sequence
          Length = 140630

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 590    gttaacaaatgcacttgaaa 609
              ||||||||||||||||||||
Sbjct: 136025 gttaacaaatgcacttgaaa 136006
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>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   ttaacaaatgcacttgaaat 610
             ||||||||||||||||||||
Sbjct: 75732 ttaacaaatgcacttgaaat 75751
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>emb|AL935258.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 7/11
          Length = 297050

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 560    ttgcttggcaacatagtcag 579
              ||||||||||||||||||||
Sbjct: 127012 ttgcttggcaacatagtcag 126993
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>gb|AC113337.2| Genomic sequence for Oryza sativa (japonica cultivar-group)
           cultivar Nipponbare clone OSJNBa0061H20, from chromosome
           10, complete sequence
          Length = 135876

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 594 acaaatgcacttgaaatggg 613
           ||||||||||||||||||||
Sbjct: 80  acaaatgcacttgaaatggg 61
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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
             complete sequence
          Length = 168402

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tccttctcaggctcctcatc 202
             ||||||||||||||||||||
Sbjct: 32960 tccttctcaggctcctcatc 32941
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>gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071I20,
              complete sequence
          Length = 145510

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 594    acaaatgcacttgaaatggg 613
              ||||||||||||||||||||
Sbjct: 121399 acaaatgcacttgaaatggg 121380
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>gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence
          Length = 164324

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    gccatccttaaccttcccct 420
              ||||||||||||||||||||
Sbjct: 114556 gccatccttaaccttcccct 114537
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>gb|AF314786.1|AF314786 Alectryon semicinereus chloroplast maturase K-like gene, complete
            sequence
          Length = 2293

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 513  ggggagccgtcgaggagaat 532
            ||||||||||||||||||||
Sbjct: 2147 ggggagccgtcgaggagaat 2166
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 594     acaaatgcacttgaaatggg 613
               ||||||||||||||||||||
Sbjct: 4574036 acaaatgcacttgaaatggg 4574017
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>gb|AC073964.3|AC073964 Homo sapiens chromosome 15 clone RP11-394B5 map 15q21.2, complete
            sequence
          Length = 189796

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  tacatttctctaaagcttaa 132
            ||||||||||||||||||||
Sbjct: 9615 tacatttctctaaagcttaa 9596
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>gb|AC022407.6|AC022407 Homo sapiens chromosome 15 clone RP11-105D1 map 15q21.2, complete
              sequence
          Length = 143210

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    tacatttctctaaagcttaa 132
              ||||||||||||||||||||
Sbjct: 137038 tacatttctctaaagcttaa 137019
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>ref|XM_341415.2| PREDICTED: Rattus norvegicus similar to TR4 orphan receptor
           associated protein TRA16 (LOC361128), mRNA
          Length = 636

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 610 tgggttcgacgatgcctttc 629
           ||||||||||||||||||||
Sbjct: 188 tgggttcgacgatgcctttc 169
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 519     ccgtcgaggagaatccgctcctcg 542
               ||||||||||||||| ||||||||
Sbjct: 7052004 ccgtcgaggagaatctgctcctcg 7051981
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>emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on chromosome 2, complete
              sequence
          Length = 194013

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    ctcataaagttgacattcaggttc 275
              ||||||||||||||| ||||||||
Sbjct: 113526 ctcataaagttgacaatcaggttc 113549
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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tccttctcaggctcctcatc 202
             ||||||||||||||||||||
Sbjct: 12245 tccttctcaggctcctcatc 12226
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>gb|AC131028.13| Mus musculus chromosome 3, clone RP23-293M23, complete sequence
          Length = 264928

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    acaaacaaatcaacctacat 117
             ||||||||||||||||||||
Sbjct: 60236 acaaacaaatcaacctacat 60255
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 594     acaaatgcacttgaaatggg 613
               ||||||||||||||||||||
Sbjct: 4574857 acaaatgcacttgaaatggg 4574838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,739,052
Number of Sequences: 3902068
Number of extensions: 5739052
Number of successful extensions: 99400
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98905
Number of HSP's gapped (non-prelim): 493
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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