>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
          Length = 3467

 Score =  319 bits (161), Expect = 5e-84
 Identities = 290/336 (86%)
 Strand = Plus / Minus

                                                                        
Query: 172  cttcttcgttcagaacatgtcggtgccattatcggcggcggcagcatcgcccattccctt 231
            ||||||| |||||||||||||||||  | |||| || || ||||||||||||||||||||
Sbjct: 3184 cttcttcattcagaacatgtcggtgtgagtatcagcagcagcagcatcgcccattccctt 3125

                                                                        
Query: 232  gcccacgtccttggaaaacagtggagcgtccagcttcggaggagccgtgccgcgcacaag 291
            | ||  ||| |  |  |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 3124 gtccgtgtcatccgggaacagtggagcgtccagctttggaggagccgtgccacgcacgag 3065

                                                                        
Query: 292  agcccagttgatgccgcggaagaacgggtgttgttttatctcgttcgacccctcatacga 351
            |||||||||||||||||||||||| ||||||| |||||||||||| || ||||| |||||
Sbjct: 3064 agcccagttgatgccgcggaagaaagggtgttcttttatctcgtttgatccctcgtacga 3005

                                                                        
Query: 352  tcccattctattcgcgggatccctgtgcagcaacctgtagatcagctgcctagctgggag 411
            |||||  |||||||  ||||||||||| |||| ||| || ||||||||||| ||||||||
Sbjct: 3004 tcccagcctattcgaaggatccctgtgtagcagcctatatatcagctgccttgctgggag 2945

                                                                        
Query: 412  gctcaccgatatacttgcggggaatctgatgtccttgtgtaggatgttggnaaangttct 471
            ||||||||||||||| ||||| ||||||||||||||||||||||||||||  || || ||
Sbjct: 2944 gctcaccgatatactcgcgggaaatctgatgtccttgtgtaggatgttggcgaatgtcct 2885

                                                
Query: 472  ttnnctggntttacctntgaagggngnntaaccata 507
             |  |||| ||||||| ||||||| |  ||||||||
Sbjct: 2884 ctgcctggttttacctctgaagggtgtgtaaccata 2849

>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
          Length = 3422

 Score =  313 bits (158), Expect = 3e-82
 Identities = 233/261 (89%)
 Strand = Plus / Minus

                                                                        
Query: 247  aaacagtggagcgtccagcttcggaggagccgtgccgcgcacaagagcccagttgatgcc 306
            |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3046 aaacagtggagcatccagcttgggaggagccgtgccgcgcacaagagcccagttgatgcc 2987

                                                                        
Query: 307  gcggaagaacgggtgttgttttatctcgttcgacccctcatacgatcccattctattcgc 366
            ||||||||| ||||| | |||||||||||| || ||||||||||||||||  ||||||| 
Sbjct: 2986 gcggaagaatgggtgctcttttatctcgtttgatccctcatacgatcccagcctattcga 2927

                                                                        
Query: 367  gggatccctgtgcagcaacctgtagatcagctgcctagctgggaggctcaccgatatact 426
             ||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2926 aggatccctgtgtagcagcctgtatatcagctgccttgctgggaggctcaccgatatact 2867

                                                                        
Query: 427  tgcggggaatctgatgtccttgtgtaggatgttggnaaangttctttnnctggntttacc 486
             ||||| ||||||||||||||||||||||||||||  || || ||||  |||| ||||||
Sbjct: 2866 cgcgggaaatctgatgtccttgtgtaggatgttggcgaatgtcctttgcctggttttacc 2807

                                 
Query: 487  tntgaagggngnntaaccata 507
            | ||||||| |  ||||||||
Sbjct: 2806 tctgaagggtgtgtaaccata 2786

>dbj|AK066816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081N02, full
            insert sequence
          Length = 2409

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 368  ggatccctgtgcagcaacctgtagatcagctgcctagctgggaggctcaccgatatactt 427
            |||||||| || |||||||| || || |||||||| || |  ||||| ||||||||||| 
Sbjct: 1875 ggatccctatgtagcaacctatacattagctgcctcgccgctaggctgaccgatatacta 1816

                                   
Query: 428  gcggggaatctgatgtccttgtg 450
            || || |||||||| ||||||||
Sbjct: 1815 gcaggaaatctgatatccttgtg 1793

>dbj|AK065596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026O13, full
            insert sequence
          Length = 3472

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 368  ggatccctgtgcagcaacctgtagatcagctgcctagctgggaggctcaccgatatactt 427
            |||||||| || |||||||| || || |||||||| || |  ||||| ||||||||||| 
Sbjct: 2938 ggatccctatgtagcaacctatacattagctgcctcgccgctaggctgaccgatatacta 2879

                                   
Query: 428  gcggggaatctgatgtccttgtg 450
            || || |||||||| ||||||||
Sbjct: 2878 gcaggaaatctgatatccttgtg 2856

>gb|AF033263.1|AF033263 Zea mays nonphototropic hypocotyl 1 (nph1) mRNA, complete cds
          Length = 3330

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 168/218 (77%)
 Strand = Plus / Minus

                                                                        
Query: 290  agagcccagttgatgccgcggaagaacgggtgttgttttatctcgttcgacccctcatac 349
            ||||||||||| ||||| || ||||| ||||||||||| |||||  | |  |||||||| 
Sbjct: 3044 agagcccagtttatgccacgaaagaaggggtgttgtttgatctccatagcgccctcatag 2985

                                                                        
Query: 350  gatcccattctattcgcgggatccctgtgcagcaacctgtagatcagctgcctagctggg 409
            || || |  ||||| || || || | ||| ||||||| ||| ||||||||||| || |  
Sbjct: 2984 gaacctagcctatttgcagggtctcggtgtagcaaccggtatatcagctgccttgccgcc 2925

                                                                        
Query: 410  aggctcaccgatatacttgcggggaatctgatgtccttgtgtaggatgttggnaaangtt 469
            |||||||||  ||| || || || |||||||| |||||||| || || || | ||| || 
Sbjct: 2924 aggctcacctgtatgctcgcaggaaatctgatatccttgtgcagaatattagcaaatgtc 2865

                                                  
Query: 470  ctttnnctggntttacctntgaagggngnntaaccata 507
            ||||  || | ||| ||| ||||||| |  ||||||||
Sbjct: 2864 ctttgtcttgttttccctctgaagggtgtataaccata 2827

>dbj|AB018444.1| Oryza sativa (japonica cultivar-group) mRNA for nonphototrophic
            hypocotyl 1a, complete cds
          Length = 3381

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 368  ggatccctgtgcagcaacctgtagatcagctgcctagctgggaggctcaccgatatactt 427
            |||||||| || |||||||| || || |||||||| || |  ||||| ||||||||||| 
Sbjct: 2841 ggatccctatgtagcaacctatacattagctgcctcgccgctaggctgaccgatatacta 2782

                                   
Query: 428  gcggggaatctgatgtccttgtg 450
            || || |||||||| ||||||||
Sbjct: 2781 gcaggaaatctgatatccttgtg 2759

>gb|AY109754.1| Zea mays CL1834_1 mRNA sequence
          Length = 3290

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 127/161 (78%)
 Strand = Plus / Minus

                                                                        
Query: 290  agagcccagttgatgccgcggaagaacgggtgttgttttatctcgttcgacccctcatac 349
            ||||||||||| ||||| || ||||| ||||||||||| |||||  | |  |||||||| 
Sbjct: 3044 agagcccagtttatgccacgaaagaaggggtgttgtttgatctccatagcgccctcatag 2985

                                                                        
Query: 350  gatcccattctattcgcgggatccctgtgcagcaacctgtagatcagctgcctagctggg 409
            || || |  ||||| || || || | ||| ||||||| ||| ||||||||||| || |  
Sbjct: 2984 gaacctagcctatttgcagggtctcggtgtagcaaccggtatatcagctgccttgccgcc 2925

                                                     
Query: 410  aggctcaccgatatacttgcggggaatctgatgtccttgtg 450
            |||||||||  ||| || || || |||||||| ||||||||
Sbjct: 2924 aggctcacctgtatgctcgcaggaaatctgatatccttgtg 2884

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 199    attatcggcggcggcagcatcg 220
              ||||||||||||||||||||||
Sbjct: 591478 attatcggcggcggcagcatcg 591499

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 199    attatcggcggcggcagcatcg 220
              ||||||||||||||||||||||
Sbjct: 248203 attatcggcggcggcagcatcg 248224

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 199    attatcggcggcggcagcatcg 220
              ||||||||||||||||||||||
Sbjct: 248261 attatcggcggcggcagcatcg 248282

>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
             Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   acatctttggcatgtctttcc 165
             |||||||||||||||||||||
Sbjct: 48566 acatctttggcatgtctttcc 48546

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 161     tttccatccaccttcttcgtt 181
               |||||||||||||||||||||
Sbjct: 9757635 tttccatccaccttcttcgtt 9757615

>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 268     cggaggagccgtgccgcgcac 288
               |||||||||||||||||||||
Sbjct: 1577568 cggaggagccgtgccgcgcac 1577548

>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0040N23
          Length = 101061

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   tttccatccaccttcttcgtt 181
             |||||||||||||||||||||
Sbjct: 30054 tttccatccaccttcttcgtt 30034

>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence
          Length = 142512

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aacagaaaaagaaaacagcc 91
             ||||||||||||||||||||
Sbjct: 34995 aacagaaaaagaaaacagcc 35014

>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence
          Length = 205920

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    tgtctttccatccaccttct 176
              ||||||||||||||||||||
Sbjct: 153552 tgtctttccatccaccttct 153571

>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    cggcggcggcagcatcgccc 223
              ||||||||||||||||||||
Sbjct: 256384 cggcggcggcagcatcgccc 256365

>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the
             PRELP gene for proline arginine-rich end leucine-rich
             repeat protein and the OPTC gene for opticin, complete
             sequence
          Length = 162436

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cagaaaaagaaaacagccag 93
             ||||||||||||||||||||
Sbjct: 84244 cagaaaaagaaaacagccag 84225

>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the
             gene for calcium/calmodulin-dependent protein kinase II
             (CaMKIINalpha), the gene for a novel protein (FLJ12875), a
              ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA
             gene for cytidine deaminase, the PINK1 gene for PTEN
             induced putative kinase 1, a novel gene (FLJ00387), the
             DDOST gene for dolichyl-diphosphooligosaccharide-protein
             glycosyltransferase and the 3' end of the KIF17 gene for
             kinesin family member 17, complete sequence
          Length = 195076

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aaaaagaaaacagccagcaacaac 100
             ||||||||||||||||||| ||||
Sbjct: 58562 aaaaagaaaacagccagcaccaac 58585

>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the
              3' end of a novel gene, the CENJP gene for centromere
              protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a
              pseudogene similar to part of solute carrier family 25
              (mitochondrial carrier; ornithine transporter) member 15
              (SLC25A15), a TPTE and PTEN homologous inositol lipid
              phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34
              (RPL34) pseudogene and 2 CpG islands, complete sequence
          Length = 167319

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aacagaaaaagaaaacagcc 91
              ||||||||||||||||||||
Sbjct: 131042 aacagaaaaagaaaacagcc 131061

>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence
          Length = 183097

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    agccagcaacaaccaacaac 107
             ||||||||||||||||||||
Sbjct: 36825 agccagcaacaaccaacaac 36844

>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2,
             complete sequence
          Length = 159100

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tttccatccaccttcttcgt 180
             ||||||||||||||||||||
Sbjct: 74413 tttccatccaccttcttcgt 74394

>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence
          Length = 135294

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    atcggcggcggcagcatcgc 221
              ||||||||||||||||||||
Sbjct: 104468 atcggcggcggcagcatcgc 104487

>gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, complete sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     agccagcaacaaccaacaac 107
              ||||||||||||||||||||
Sbjct: 101530 agccagcaacaaccaacaac 101549

>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 160    ctttccatccaccttcttcgttca 183
              ||||||||||||||||||| ||||
Sbjct: 138198 ctttccatccaccttcttctttca 138221

>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence
          Length = 174914

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    ctttccatccaccttcttcgttca 183
              ||||||||||||||||||| ||||
Sbjct: 165479 ctttccatccaccttcttctttca 165456

>emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chromosome 2, complete
            sequence
          Length = 190808

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  tgtctttccatccaccttct 176
            ||||||||||||||||||||
Sbjct: 4345 tgtctttccatccaccttct 4364

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gtctttccatccaccttctt 177
               ||||||||||||||||||||
Sbjct: 1407362 gtctttccatccaccttctt 1407343

>gb|AF002217.1|AF002217 Ralstonia eutropha megaplasmid pHG1 nitric oxide reductase (norB)
            gene, complete cds
          Length = 3713

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  cggcggcggcagcatcgccc 223
            ||||||||||||||||||||
Sbjct: 3657 cggcggcggcagcatcgccc 3676

>gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, complete sequence
          Length = 59902

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    agaaaaagaaaacagccagc 94
             ||||||||||||||||||||
Sbjct: 41012 agaaaaagaaaacagccagc 41031

>gb|M91082.1|CULLINERTD Culex pipiens LINE repeat (Juan-C retroposon) encoding DNA-binding
           protein and reverse transcriptase genes, complete cds
          Length = 4679

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  aacagaaaaagaaaacagcc 91
           ||||||||||||||||||||
Sbjct: 426 aacagaaaaagaaaacagcc 445


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,703,604
Number of Sequences: 3902068
Number of extensions: 3703604
Number of successful extensions: 79145
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79023
Number of HSP's gapped (non-prelim): 122
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)