ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ207723.1| Zea mays cultivar inbred line Mo17 IDP512 marker 90 4e-15
2gb|DQ207722.1| Zea mays cultivar B73 IDP512 marker 90 4e-15
3gb|AY104279.1| Zea mays PCO103545 mRNA sequence 90 4e-15
4ref|NM_196510.1| Oryza sativa (japonica cultivar-group) putative... 86 6e-14
5dbj|AB193582.1| Oryza sativa (japonica cultivar-group) OsGME-1 m... 86 6e-14
6gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 86 6e-14
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 6e-14
8gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 86 6e-14
9dbj|AK104822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 6e-14
10dbj|AK069385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 6e-14
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 6e-14
12gb|BT016578.1| Zea mays clone Contig411 mRNA sequence 82 1e-12
13gb|AY106775.1| Zea mays PCO117540 mRNA sequence 74 2e-10
14gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.003
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
16dbj|AK102348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.003
18ref|NM_122767.2| Arabidopsis thaliana GDP-mannose 3,5-epimerase/... 44 0.21
19gb|AY116953.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, comp... 44 0.21
20gb|AY057694.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, comp... 44 0.21
21gb|AY057660.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, comp... 44 0.21
22gb|AF272706.1|F7P1 Arabidopsis thaliana BAC F7P1 44 0.21
23gb|AC150687.3| Bos taurus BAC CH240-243M2 (Children's Hospital ... 40 3.3
24gb|AC150680.7| Monodelphis domestica, clone XX-28D5, complete se... 40 3.3 
>gb|DQ207723.1| Zea mays cultivar inbred line Mo17 IDP512 marker
          Length = 473

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 179 ctccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 238
           |||||||||| | || ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 115 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 174

                           
Query: 239 cttggatgatccgtac 254
           |||||| || ||||||
Sbjct: 175 cttggacgacccgtac 190
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>gb|DQ207722.1| Zea mays cultivar B73 IDP512 marker
          Length = 527

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 179 ctccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 238
           |||||||||| | || ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 107 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 166

                           
Query: 239 cttggatgatccgtac 254
           |||||| || ||||||
Sbjct: 167 cttggacgacccgtac 182
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>gb|AY104279.1| Zea mays PCO103545 mRNA sequence
          Length = 1547

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 179  ctccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 238
            |||||||||| | || ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 1253 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 1194

                            
Query: 239  cttggatgatccgtac 254
            |||||| || ||||||
Sbjct: 1193 cttggacgacccgtac 1178
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>ref|NM_196510.1| Oryza sativa (japonica cultivar-group) putative epimerase/dehydratase
            (OSJNBa0061K21.15), mRNA
          Length = 1137

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 176  ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
            ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1137 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1078

                              
Query: 236  caccttggatgatccgta 253
            |||||||||||| |||||
Sbjct: 1077 caccttggatgagccgta 1060
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>dbj|AB193582.1| Oryza sativa (japonica cultivar-group) OsGME-1 mRNA for
            GDP-mannose-3'',5''-epimerase, complete cds
          Length = 1212

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 176  ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
            ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1173 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1114

                              
Query: 236  caccttggatgatccgta 253
            |||||||||||| |||||
Sbjct: 1113 caccttggatgagccgta 1096
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>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                         
Query: 176   ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
             ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 68476 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 68417

                               
Query: 236   caccttggatgatccgta 253
             |||||||||||| |||||
Sbjct: 68416 caccttggatgagccgta 68399
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                            
Query: 176      ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
                ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 14128838 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 14128779

                                  
Query: 236      caccttggatgatccgta 253
                |||||||||||| |||||
Sbjct: 14128778 caccttggatgagccgta 14128761
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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome
           10, complete sequence
          Length = 142737

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 176 ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
           ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 911 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 852

                             
Query: 236 caccttggatgatccgta 253
           |||||||||||| |||||
Sbjct: 851 caccttggatgagccgta 834
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>dbj|AK104822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-B04, full
            insert sequence
          Length = 1587

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 176  ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
            ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1258 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1199

                              
Query: 236  caccttggatgatccgta 253
            |||||||||||| |||||
Sbjct: 1198 caccttggatgagccgta 1181
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>dbj|AK069385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D14, full
            insert sequence
          Length = 1592

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 176  ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
            ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1263 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1204

                              
Query: 236  caccttggatgatccgta 253
            |||||||||||| |||||
Sbjct: 1203 caccttggatgagccgta 1186
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                            
Query: 176      ttactccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 235
                ||||||||||||  | || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 14137080 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 14137021

                                  
Query: 236      caccttggatgatccgta 253
                |||||||||||| |||||
Sbjct: 14137020 caccttggatgagccgta 14137003
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>gb|BT016578.1| Zea mays clone Contig411 mRNA sequence
          Length = 1538

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 179  ctccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 238
            |||||||||| | || | ||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 1251 ctccttgccgtcggcggggcggagggagcccagctgcacgggcgcctgggtggacaccac 1192

                            
Query: 239  cttggatgatccgtac 254
            |||||| || ||||||
Sbjct: 1191 cttggacgacccgtac 1176
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>gb|AY106775.1| Zea mays PCO117540 mRNA sequence
          Length = 541

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 178 actccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 237
           ||||||||||  |||| |||||||||||||| ||||| ||||| ||||||||   ||| |
Sbjct: 317 actccttgccatcagcggcgcggagggagccgagctgaaccggggcctgtgtctgcacga 258

                           
Query: 238 ccttggatgatccgta 253
           ||||||||||||||||
Sbjct: 257 ccttggatgatccgta 242
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>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10,
              complete sequence
          Length = 170681

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                          
Query: 178    actccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 237
              ||||||| ||  |||| || ||||||||||| ||||||||||| ||||| ||   ||| |
Sbjct: 129761 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 129820

                              
Query: 238    ccttggatgatccgta 253
              |||||||||| |||||
Sbjct: 129821 ccttggatgacccgta 129836
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                            
Query: 178      actccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 237
                ||||||| ||  |||| || ||||||||||| ||||||||||| ||||| ||   ||| |
Sbjct: 21606242 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 21606301

                                
Query: 238      ccttggatgatccgta 253
                |||||||||| |||||
Sbjct: 21606302 ccttggatgacccgta 21606317
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>dbj|AK102348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091C16, full
            insert sequence
          Length = 1533

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 178  actccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 237
            ||||||| ||  |||| || ||||||||||| ||||||||||| ||||| ||   ||| |
Sbjct: 1189 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 1130

                            
Query: 238  ccttggatgatccgta 253
            |||||||||| |||||
Sbjct: 1129 ccttggatgacccgta 1114
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                            
Query: 178      actccttgccgncagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 237
                ||||||| ||  |||| || ||||||||||| ||||||||||| ||||| ||   ||| |
Sbjct: 21916441 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 21916500

                                
Query: 238      ccttggatgatccgta 253
                |||||||||| |||||
Sbjct: 21916501 ccttggatgacccgta 21916516
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>ref|NM_122767.2| Arabidopsis thaliana GDP-mannose 3,5-epimerase/ catalytic AT5G28840
            mRNA, complete cds
          Length = 1611

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  cagccgcgcggagggagcccagctgcaccggtgc 223
            ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1298 cagccgcgcggagtgagcctagctgaaccggtgc 1265
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>gb|AY116953.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds
          Length = 1134

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  cagccgcgcggagggagcccagctgcaccggtgc 223
            ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1120 cagccgcgcggagtgagcctagctgaaccggtgc 1087
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>gb|AY057694.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds
          Length = 1404

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  cagccgcgcggagggagcccagctgcaccggtgc 223
            ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1183 cagccgcgcggagtgagcctagctgaaccggtgc 1150
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>gb|AY057660.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds
          Length = 1452

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  cagccgcgcggagggagcccagctgcaccggtgc 223
            ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1183 cagccgcgcggagtgagcctagctgaaccggtgc 1150
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>gb|AF272706.1|F7P1 Arabidopsis thaliana BAC F7P1
          Length = 110714

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 190   cagccgcgcggagggagcccagctgcaccggtgc 223
             ||||||||||||| ||||| ||||| ||||||||
Sbjct: 18672 cagccgcgcggagtgagcctagctgaaccggtgc 18705
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>gb|AC150687.3| Bos taurus  BAC CH240-243M2 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 144223

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ggtgcctgtgtggacaccac 238
             ||||||||||||||||||||
Sbjct: 63885 ggtgcctgtgtggacaccac 63866
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>gb|AC150680.7| Monodelphis domestica, clone XX-28D5, complete sequence
          Length = 154058

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    gcctgtgtggacaccacctt 241
              ||||||||||||||||||||
Sbjct: 141342 gcctgtgtggacaccacctt 141361


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,655,736
Number of Sequences: 3902068
Number of extensions: 1655736
Number of successful extensions: 29035
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28958
Number of HSP's gapped (non-prelim): 77
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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