>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 45/107 (42%), Positives = 65/107 (60%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE EAL RLK +  +       A    T+N + G +FS K SPWLA GC+SPR++YE++
Sbjct: 217 GGETEALARLKHYFWDTNAV---ATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQI 273

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           KK+ +            + T++  T W++FELLWRD+F+FV  KY +
Sbjct: 274 KKYEV------------ERTANQSTYWVIFELLWRDYFKFVALKYGN 308

>CRYD_SYNY3 (P77967) Cryptochrome DASH|
          Length = 489

 Score = 89.7 bits (221), Expect = 7e-18
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKD--STQNSIYGANFSCKISPWLATGCLSPRFMYE 432
           GGE   L RL+ +           +KD   T+N + GA++S K SPWLA GCLSPRF+Y+
Sbjct: 214 GGETAGLARLQDY-----FWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQ 268

Query: 431 ELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           E+K++            + +  S+  T+WL+FELLWRDFFRFV +KY +
Sbjct: 269 EVKRY------------EQERVSNDSTHWLIFELLWRDFFRFVAQKYGN 305

>CRYD_XENLA (Q75WS4) Cryptochrome DASH|
          Length = 523

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 43/105 (40%), Positives = 68/105 (64%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE++AL+RL+ +  E  +  +   KD T+N + G ++S K +PWLA GC+SPR++YE++
Sbjct: 218 GGESQALQRLEHYFWETNLVAS--YKD-TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQI 274

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 291
            K+            + + T++  T W++FELLWRD+FRFV  KY
Sbjct: 275 GKY------------EKERTANQSTYWVIFELLWRDYFRFVALKY 307

>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 42/118 (35%), Positives = 72/118 (61%)
 Frame = -2

Query: 635 SKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGC 456
           +K+  G + +GGE+ AL R+ ++  +   +    V   T+N + G ++S K SPWLA+G 
Sbjct: 302 TKAEKGMHFVGGESAALGRVHEYFWK---KDQLKVYKETRNGMLGPDYSTKFSPWLASGS 358

Query: 455 LSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSA 282
           LSPR++ EE+K++  + I + S            T W++FEL+WRD+FRF++ KY ++
Sbjct: 359 LSPRYICEEVKRYEKQRIANDS------------TYWVLFELIWRDYFRFISAKYGNS 404

>CRYD_LYCES (Q38JU2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
           (Cryptochrome-3)
          Length = 577

 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 43/119 (36%), Positives = 70/119 (58%)
 Frame = -2

Query: 641 QDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLAT 462
           Q  K + G N +GGE+ AL R+  +  +   +    V   T+N + GA++S K SPWLA+
Sbjct: 290 QQEKVSKGMNFVGGESAALGRVHDYFWK---KDLLKVYKETRNGMLGADYSTKFSPWLAS 346

Query: 461 GCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           G LSPRF+ EE+K++            + +  S+  T W++FEL+WRD+F F++ K ++
Sbjct: 347 GSLSPRFIDEEVKRY------------EKERLSNDSTYWVLFELIWRDYFGFLSIKLAN 393

>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 569

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 38/109 (34%), Positives = 64/109 (58%)
 Frame = -2

Query: 620 GSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRF 441
           G   +GGE+  + R+ ++  +   +    V   T+N + G ++S K SPWLA GC+SPRF
Sbjct: 289 GMRFVGGESAGVGRVFEYFWK---KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRF 345

Query: 440 MYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKK 294
           +YEE++++    + + S            T W++FEL+WRD+FRF++ K
Sbjct: 346 IYEEVQRYEKERVANNS------------TYWVLFELIWRDYFRFLSIK 382

>CRYD_GLOVI (Q7NMD1) Cryptochrome DASH|
          Length = 500

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 40/105 (38%), Positives = 63/105 (60%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE   L RL+++  +  +   K+ K  T+N + GA++S K S WLA GCLS R+++E++
Sbjct: 212 GGETSGLARLEEYFWQKSLL--KSYKQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQV 268

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 291
           + +  + I + S            T WL+FELLWRD+FRF+  K+
Sbjct: 269 QTYETKRIKNDS------------TYWLIFELLWRDYFRFIAAKH 301

>CRYD_OSTTA (Q5IFN2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 546

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 36/107 (33%), Positives = 60/107 (56%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE+ AL R+K +  E       A    T+N + G ++S K++PWLA GC+SPR +  E+
Sbjct: 245 GGESNALARVKYYLWE---SDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEI 301

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           +++            + +   +  T W++FEL+WRDFF+F   K+ +
Sbjct: 302 RRY------------ESERVENKSTYWVIFELIWRDFFKFFALKHGN 336

>CRYD_NATPD (Q3IPX9) Cryptochrome DASH|
          Length = 474

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 37/107 (34%), Positives = 62/107 (57%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE+    R++ +  E     +     +T+N + GA++S K SPWLA GCLSPR+++ E+
Sbjct: 210 GGESAGKRRVESYIWE---GDHLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWLHREV 266

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           +++            + +  ++  T WL+FEL WRDFF+F  +KY +
Sbjct: 267 ERY------------EDERVANEDTYWLVFELAWRDFFQFQFEKYGA 301

>CRYD_RHOBA (Q7UJB1) Cryptochrome DASH|
          Length = 488

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 33/107 (30%), Positives = 60/107 (56%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GG+  A +R++++      +    V   T+N +   N S K SPWLA GCLSPR + + +
Sbjct: 211 GGQNAAQQRMEEYIWN---EDRLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHV 267

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           +++            + +   +  T W++FELLWRD+FR++++K+ +
Sbjct: 268 RRY------------EEERVKNKSTYWMIFELLWRDYFRWISRKHGA 302

>CRYD_VIBPA (Q87JP5) Cryptochrome DASH|
          Length = 445

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 34/105 (32%), Positives = 53/105 (50%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE   L   +++         K     T+N + G  +S K SPWLA GC+SPR ++  L
Sbjct: 201 GGEWSGLAHCRRYFFSGLASSYK----ETRNGLDGMAYSTKFSPWLALGCVSPRMIHAML 256

Query: 425 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 291
           K++           +   G +D+ T W+ FELLWR++F +  + Y
Sbjct: 257 KQY-----------EQTQGANDS-TYWIYFELLWREYFYWYARCY 289

>CRYD_VIBCH (Q9KR33) Cryptochrome DASH|
          Length = 461

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 33/111 (29%), Positives = 57/111 (51%)
 Frame = -2

Query: 617 SNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFM 438
           S  +GGE   L   + + +       K     T+N + G ++S K SPWLA G +SP+ +
Sbjct: 197 SAFVGGEQAGLTHCQNYFSSLLPSRYK----ETRNGLDGMDYSTKFSPWLALGAVSPKTI 252

Query: 437 YEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 285
           Y  L+++           +   G +D+ T W+ FELLWR++F +  ++Y +
Sbjct: 253 YAMLQRY-----------EAVHGANDS-TYWIFFELLWREYFYWYARRYGA 291

>CRYD_NEUCR (Q7SI68) Putative crytochrome DASH, mitochondrial precursor|
          Length = 745

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 426
           GGE  A +R+        M   K+ KDS +N + G +FS K+S +LA GC++ R ++   
Sbjct: 266 GGETSAHKRIDHLVLSGGM---KSYKDS-RNGLLGPDFSTKLSAYLAQGCVTARQIH--- 318

Query: 425 KKHAIRAIPSGSTPK----DGDGTSD-AGTNWLMFELLWRDFFRFVTKKY 291
             HA+ A   G+  K    DG G  D  GT  +  ELLWRD+ R   +KY
Sbjct: 319 --HALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKY 366

>CRYD_GIBZE (Q4I1Q6) Putative crytochrome DASH|
          Length = 678

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/124 (32%), Positives = 57/124 (45%)
 Frame = -2

Query: 662 SAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCK 483
           S PP   + +KSA      GGE  A +RL        M         T+N + G  +S K
Sbjct: 227 SDPPQFPEGAKSAHPFK--GGETPAWDRLYHLIKSGAM----TTYQETRNGLLGTEYSTK 280

Query: 482 ISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 303
           +S +LA G ++ R ++ EL K    +  S S         + GT  + FELLWRD+ R  
Sbjct: 281 LSAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLC 340

Query: 302 TKKY 291
           T K+
Sbjct: 341 TFKF 344

>CRYD_IDILO (Q5QXE0) Cryptochrome DASH|
          Length = 449

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 34/124 (27%), Positives = 55/124 (44%)
 Frame = -2

Query: 662 SAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCK 483
           S P   A+     A  +  GGE  AL  L  + +      +      T+N++   + S K
Sbjct: 194 SYPGFKAETLNELASDDFEGGERAALTHLTSYFSG----ESAGTYKQTRNALDDFSSSTK 249

Query: 482 ISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 303
            SPWLA GCLS R +   L+ +            + +   +  + W+ FELLWR++F + 
Sbjct: 250 FSPWLAQGCLSVRQIMAALRAY------------ETEFGENESSYWISFELLWREYFFWY 297

Query: 302 TKKY 291
             K+
Sbjct: 298 ALKH 301

>PHR_NEUCR (P27526) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 642

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 33/115 (28%), Positives = 51/115 (44%)
 Frame = -2

Query: 647 MAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWL 468
           +  D K+   S    GE EAL+RL+KF  E         K + + +I     +  +S   
Sbjct: 345 LRDDEKARYHSLWPAGEHEALKRLEKFCDEA------IGKYAERRNIPAMQGTSNLSVHF 398

Query: 467 ATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 303
           A+G LS R         AIR     +  K  +G ++    W+  E+ WRDF++ V
Sbjct: 399 ASGTLSAR--------TAIRTARDRNNTKKLNGGNEGIQRWIS-EVAWRDFYKHV 444

>PHR_ECOLI (P00914) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 472

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 31/108 (28%), Positives = 47/108 (43%)
 Frame = -2

Query: 599 EAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKK 420
           E  A+ +L++F        N A +   Q        + ++S  LATG LSPR     L  
Sbjct: 205 EKAAIAQLRQFCQ------NGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA 258

Query: 419 HAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSAQK 276
              +A+  G           AG+ WL  EL+WR+F+R +   + S  K
Sbjct: 259 EQPQALDGG-----------AGSVWLN-ELIWREFYRHLITYHPSLCK 294

>PHR_BACPF (Q04449) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme) (Fragment)
          Length = 339

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 31/100 (31%), Positives = 48/100 (48%)
 Frame = -2

Query: 602 GEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELK 423
           GE  A++RL+ F  +  +   KA +D    SI G +   ++SP++ TG +S R +Y    
Sbjct: 70  GEEHAIKRLQMFTKKR-LSGYKANRDFP--SITGTS---RLSPYIKTGAVSSRSIYY--- 120

Query: 422 KHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 303
            H + A        + D  S       + EL WRDF+R V
Sbjct: 121 -HILNA--------EADSYS---AETFLKELAWRDFYRMV 148

>PHR_SALTY (P25078) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 473

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -2

Query: 485 KISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRF 306
           ++S  LATG LSPR     L     +A+  G            G+ WL  EL+WR+F+R 
Sbjct: 238 RLSASLATGGLSPRQCLHRLLAEQPQALDGGP-----------GSVWLN-ELIWREFYRH 285

Query: 305 VTKKYSSAQK 276
           +   Y +  K
Sbjct: 286 LMTWYPALCK 295

>PIP_SERMA (O32449) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 317

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +2

Query: 44  DRYNNLFRDQIGPKCRNSLLGASLSGNIYWEKIHSIERLHELA 172
           +RY  L  DQ G  C  S   ASL  N  W  +  IERL E+A
Sbjct: 62  ERYKVLLFDQRG--CGRSRPHASLDNNTTWHLVADIERLREMA 102

>TPBG_MACFA (Q4R8Y9) Trophoblast glycoprotein precursor|
          Length = 420

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 454 RQPVASHGEILQEKLAPYMLFWVLSLTALFGCIQHSAANFFSLSRASASPPI 609
           R P A  G +   +LA  +L WV S ++       S++  F  S ASA PP+
Sbjct: 7   RGPAAGDGRLRLARLALVLLGWVSSSSSTSSASSSSSSAPFLASAASAQPPL 58

>TIF1B_HUMAN (Q13263) Transcription intermediary factor 1-beta (TIF1-beta)|
           (Tripartite motif protein 28) (Nuclear corepressor
           KAP-1) (KRAB-associated protein 1) (KAP-1)
           (KRAB-interacting protein 1) (KRIP-1) (RING finger
           protein 96)
          Length = 835

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -2

Query: 662 SAPPAMAQDSKSAAGSNLIGGEAEALERLK 573
           +AP A A  S SAA S+  GG AEALE L+
Sbjct: 34  TAPSAAASASASAAASSPAGGGAEALELLE 63

>POF2_SCHPO (O74783) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat|
           protein 2) (F-box protein pof2)
          Length = 463

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 45  TDTTISSEIKLVQNAGTAYLGHHYQATFIGKKSTPLKGC 161
           TD+++ S  KL Q+  T +LGH Y+ T IG +   LK C
Sbjct: 291 TDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL-LKSC 328

>EXTL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223)|
           (Glucuronyl-galactosyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase)
           (Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
           (Alpha-GalNAcT EXTL2) (EXT-related protein 2)
          Length = 330

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 370 PSPSLGVDPDGIALMACFFNSSYMKRGERQPVASHGEI 483
           P P  G     + + A FFNS Y++  ++QP A H  I
Sbjct: 201 PGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALI 238

>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 334 NCYGEISSGSSQRSTALHRRHPKLHRPLVAHL 239
           N YG +   S+ RS++L+R+HPK  R + + L
Sbjct: 107 NKYGHLDMFSTLRSSSLYRQHPKTLRSICSDL 138

>K502_ACTCH (P43394) Fruit protein PKIWI502|
          Length = 317

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 244 VQPVAGATSDVFCAELYFFVTNLKKSLHSNSNINQFVPASDVPSPSLGVDPDGIALMACF 423
           ++ V G TS+V C+     V +L + +    +I Q +P  D P+  + V   G++    F
Sbjct: 150 IRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSF 209

Query: 424 FNSSY 438
               +
Sbjct: 210 IEEGF 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,539,280
Number of Sequences: 219361
Number of extensions: 2237230
Number of successful extensions: 6406
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6386
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)