>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein)
          Length = 386

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 28/67 (41%), Positives = 50/67 (74%)
 Frame = -3

Query: 417 QDAEASGQSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQGEQEKKDEADKT 238
           + +EA+G  +   +  +++F++S+L+SLPGVDPNDP+VK+LLASL  + ++ +++E+  +
Sbjct: 322 ESSEATGAGN--NLLGNQAFISSVLSSLPGVDPNDPAVKELLASLPDESKRTEEEES-SS 378

Query: 237 DKPEDGK 217
            K ED K
Sbjct: 379 KKGEDEK 385

>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein) (Antisecretory
           factor 1) (AF) (ASF)
          Length = 377

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 37/60 (61%)
 Frame = -3

Query: 411 AEASGQSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQGEQEKKDEADKTDK 232
           +E + + D   V +D  F+ S+L +LPGVDPN+ ++++ + SL  Q  ++ K +  + DK
Sbjct: 317 SEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDK 376

>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein)
          Length = 376

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = -3

Query: 396 QSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQ----GEQEKKDEADK 241
           + D   V +D  F+ S+L +LPGVDPN+ +++ ++ +L  Q    G+ +KK+E  K
Sbjct: 321 EEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQATKDGKNDKKEEEKK 376

>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein) (54 kDa subunit of mu particle)
           (p54)
          Length = 396

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = -3

Query: 390 DMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQGEQEKKDEADKTDK 232
           D S+V  D +F+ S+L +LPGVDP   +V+D + SL+ + + +K D  D   K
Sbjct: 345 DYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSLN-KDKDKKSDGKDSQKK 396

>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A)
          Length = 420

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 378 VFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQGEQ--EKKDEADKTDK 232
           V  D  F+ S+L SLPGVD  +  V+  + +L     Q   KKDE +  DK
Sbjct: 367 VMYDAEFLESVLQSLPGVDTQNEDVRKAINALTKSQSQRGSKKDEKEDEDK 417

>RINT1_DROME (Q9VS46) RINT1-like protein (DmRINT-1)|
          Length = 724

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +3

Query: 96  SYRQRSYKRIK*IHS----PSVKAANAGNLLPFFMCMKQQRDFSSSHLQACLSCPPHLSS 263
           S+RQR  +    +HS    PS+   NA N L   +  +   +    HL A L+ P     
Sbjct: 468 SFRQRLVQ----LHSSGAVPSIPILNAINYLVMVL-REWGENVHYLHLHAALAGPNATEI 522

Query: 264 PALLGHAKMPVDLSQMGHWGQHQEAN*GWMSQMICLQTLCSYQIDQTPLRPEQTFEEP 437
            ++  HA     ++++ HW +    N    +         SY+ D  P  PEQ   EP
Sbjct: 523 NSVFEHA-----VAELEHWARQLMRNLATKATNEMKAKSMSYRRDAWPTMPEQNSREP 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,720,246
Number of Sequences: 219361
Number of extensions: 1341811
Number of successful extensions: 3908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3902
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)