>gb|BT009092.1| Triticum aestivum clone wkm2c.pk005.b12:fis, full insert mRNA
           sequence
          Length = 1012

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 27  tagttaataacactggcttgcactgct 53
           |||||||||||||||| ||||||||||
Sbjct: 923 tagttaataacactgggttgcactgct 897



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 80  cactctcacataactgaaggtt 101
           ||||||||||||||||||||||
Sbjct: 883 cactctcacataactgaaggtt 862

>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4  ~complete genomic
              sequence, complete sequence
          Length = 174826

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 161    aaaaaagacaaaaagttcaaataatctaa 189
              |||||| | ||||||||||||||||||||
Sbjct: 107109 aaaaaaaaaaaaaagttcaaataatctaa 107137

>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
              complete sequence
          Length = 203958

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    aaaaagttcaaataatctaaa 190
              |||||||||||||||||||||
Sbjct: 173021 aaaaagttcaaataatctaaa 173041

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4184318 taaagcgttttacttaaaaa 4184299

>gb|AY684169.1| Homo sapiens REV3-like, catalytic subunit of DNA polymerase zeta
             (yeast) (REV3L) gene, complete cds
          Length = 188355

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aaaaagacaaaaagttcaaa 181
             ||||||||||||||||||||
Sbjct: 43298 aaaaagacaaaaagttcaaa 43317

>ref|XM_854298.1| PREDICTED: Canis familiaris similar to brefeldin A-inhibited guanine
            nucleotide-exchange protein 1, transcript variant 6
            (LOC477903), mRNA
          Length = 6883

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaaaagacaaaaagttcaa 180
            ||||||||||||||||||||
Sbjct: 6285 aaaaaagacaaaaagttcaa 6266

>ref|XM_854261.1| PREDICTED: Canis familiaris similar to brefeldin A-inhibited guanine
            nucleotide-exchange protein 1, transcript variant 5
            (LOC477903), mRNA
          Length = 6739

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaaaagacaaaaagttcaa 180
            ||||||||||||||||||||
Sbjct: 6141 aaaaaagacaaaaagttcaa 6122

>ref|XM_854229.1| PREDICTED: Canis familiaris similar to brefeldin A-inhibited guanine
            nucleotide-exchange protein 1, transcript variant 4
            (LOC477903), mRNA
          Length = 6868

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaaaagacaaaaagttcaa 180
            ||||||||||||||||||||
Sbjct: 6270 aaaaaagacaaaaagttcaa 6251

>ref|XM_854191.1| PREDICTED: Canis familiaris similar to brefeldin A-inhibited guanine
            nucleotide-exchange protein 1, transcript variant 3
            (LOC477903), mRNA
          Length = 6826

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaaaagacaaaaagttcaa 180
            ||||||||||||||||||||
Sbjct: 6228 aaaaaagacaaaaagttcaa 6209

>ref|XM_535095.2| PREDICTED: Canis familiaris similar to brefeldin A-inhibited guanine
            nucleotide-exchange protein 1, transcript variant 1
            (LOC477903), mRNA
          Length = 7230

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaaaagacaaaaagttcaa 180
            ||||||||||||||||||||
Sbjct: 6632 aaaaaagacaaaaagttcaa 6613

>gb|AC127317.3| Mus musculus BAC clone RP23-227H18 from chromosome 7, complete
            sequence
          Length = 180376

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 60   tttcccagccagatccctcacact 83
            ||||||||||||||||||| ||||
Sbjct: 9073 tttcccagccagatccctcccact 9096

>gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosome 7, complete sequence
          Length = 188989

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    tttcccagccagatccctcacact 83
             ||||||||||||||||||| ||||
Sbjct: 48777 tttcccagccagatccctcccact 48754

>emb|Z81091.1|CEF55H12 Caenorhabditis elegans Cosmid F55H12, complete sequence
          Length = 38070

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   gaaaaaagacaaaaagttca 179
             ||||||||||||||||||||
Sbjct: 11121 gaaaaaagacaaaaagttca 11140

>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9,
             complete sequence
          Length = 103882

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   aaagttcaaataatctaaag 191
             ||||||||||||||||||||
Sbjct: 44747 aaagttcaaataatctaaag 44728

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4696710 taaagcgttttacttaaaaa 4696691

>gb|BC049271.1| Mus musculus solute carrier family 38, member 2, mRNA (cDNA clone
            IMAGE:3984227), partial cds
          Length = 3659

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  aagttcaaataatctaaagc 192
            ||||||||||||||||||||
Sbjct: 3386 aagttcaaataatctaaagc 3405

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4454014 taaagcgttttacttaaaaa 4453995

>emb|AL512325.9| Human DNA sequence from clone RP3-442M11 on chromosome 6, complete
             sequence
          Length = 65646

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aaaaagacaaaaagttcaaa 181
             ||||||||||||||||||||
Sbjct: 50392 aaaaagacaaaaagttcaaa 50373

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4162329 taaagcgttttacttaaaaa 4162310

>emb|AL139395.7| Human DNA sequence from clone RP11-130N24 on chromosome Xq13.3-21.2
              Contains the 3' end of gene KIAA2022, complete sequence
          Length = 146610

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    aaaaaagacaaaaagttcaaataa 184
              |||||||||||||| |||||||||
Sbjct: 120908 aaaaaagacaaaaacttcaaataa 120931

>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes
          Length = 176195

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   taaagcgttttacttaaaaa 206
             ||||||||||||||||||||
Sbjct: 29548 taaagcgttttacttaaaaa 29529

>gb|BC019690.1| Mus musculus solute carrier family 38, member 2, mRNA (cDNA clone
            IMAGE:3491773), partial cds
          Length = 1367

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  aagttcaaataatctaaagc 192
            ||||||||||||||||||||
Sbjct: 1085 aagttcaaataatctaaagc 1104

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 3472375 taaagcgttttacttaaaaa 3472394

>gb|AC089995.1|AC089995 Caenorhabditis briggsae cosmid CB035H18, complete sequence
          Length = 79459

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aaaaagacaaaaagttcaaa 181
             ||||||||||||||||||||
Sbjct: 27468 aaaaagacaaaaagttcaaa 27449

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 3588901 taaagcgttttacttaaaaa 3588920

>gb|AC136738.23| Mus musculus chromosome 6, clone RP23-173F22, complete sequence
          Length = 195153

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   aaaaagttcaaataatctaa 189
             ||||||||||||||||||||
Sbjct: 27070 aaaaagttcaaataatctaa 27051

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 5042337 taaagcgttttacttaaaaa 5042318

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4973571 taaagcgttttacttaaaaa 4973552

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 3494100 taaagcgttttacttaaaaa 3494119

>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence
          Length = 197402

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    aaaaagttcaaataatctaa 189
              ||||||||||||||||||||
Sbjct: 113343 aaaaagttcaaataatctaa 113324

>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4022887 taaagcgttttacttaaaaa 4022868

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     taaagcgttttacttaaaaa 206
               ||||||||||||||||||||
Sbjct: 4383691 taaagcgttttacttaaaaa 4383672

>gb|M10112.1|ECOBTUB E.coli btuB gene for the vitamin B12 receptor protein BtuB
          Length = 2220

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 taaagcgttttacttaaaaa 206
           ||||||||||||||||||||
Sbjct: 979 taaagcgttttacttaaaaa 960


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,325,720
Number of Sequences: 3902068
Number of extensions: 2325720
Number of successful extensions: 197946
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 197434
Number of HSP's gapped (non-prelim): 512
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)